View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14628_low_7 (Length: 346)
Name: NF14628_low_7
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 21179863 - 21179540
Alignment:
| Q |
17 |
cagttttagtgattcaagcgacaatccgagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttgga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21179863 |
cagttttagtgattcaagcgacaatccgagttgataaacatgcgttggcaattgaaacaacgcatgtttaccatcaaaatcattatcttcccattttgga |
21179764 |
T |
|
| Q |
117 |
tccgagaaatcaagaattaactctttcacaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtga |
216 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
21179763 |
tccgggaaatcaagaattaactctttcactccccgttgtatcgtgaaagcaacacaacgctcaattgtttccccacaagtttgaggattcgaaaccgtga |
21179664 |
T |
|
| Q |
217 |
gagaaaacctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179663 |
gagaaaacctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagt |
21179564 |
T |
|
| Q |
317 |
tgaatccacaaagaagttttcatt |
340 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
21179563 |
tgaatccacaaagaagttttcatt |
21179540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 40987130 - 40987447
Alignment:
| Q |
20 |
ttttagtgattcaagcgacaatccgagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttggatcc |
119 |
Q |
| |
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||||||||||| ||| || |||||||||||||||||||||||| |||||| |||| ||||||||| |||| |||||||| || | |||||| |||| |
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| T |
40987130 |
ttttagtgatttgagcaacgatccgagttgataaacatgtgttggcaattggaacagcgcatgtttatcatccaaatcattctcattccatttgggatta |
40987229 |
T |
|
| Q |
120 |
gagaaatcaagaattaactctttcacaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtgagag |
219 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| || |||| ||||||| |
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| T |
40987230 |
gagaaatcaagagttaaatctttcacaccccgttgtgtcacgaaagcaacacaacgttcgattgtttccccacaagtttgagggtttgaaacagtgagag |
40987329 |
T |
|
| Q |
220 |
aaaacctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttga |
319 |
Q |
| |
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||||| ||||||| ||||||| || ||||| |||||| | | || |||| ||||||||||| ||| ||| |||||||| ||||| | |||||||| |
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| T |
40987330 |
aaaacttgttaattcgacggctagtgaattgtgcaatccaatttttgatgaagtcgatgaaaacttctctctgtccttgtttgatttcacccgaagttga |
40987429 |
T |
|
| Q |
320 |
atccacaaagaagttttc |
337 |
Q |
| |
|
||| ||||| |||||||| |
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|
| T |
40987430 |
atcaacaaaaaagttttc |
40987447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 310
Target Start/End: Original strand, 31463093 - 31463359
Alignment:
| Q |
44 |
gagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttggatccgagaaatcaagaattaactctttc |
143 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| |||| ||||| || | |||||||| ||||| |||||||||||| |||| |||||| |
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| T |
31463093 |
gagttgataaacatgcattgacaattgaaacaacacatgtttatcatccaaatcgttctagtcccatttaggatcagagaaatcaagagttaaatctttc |
31463192 |
T |
|
| Q |
144 |
acaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtgagagaaaacctgttaatggcgcggctag |
243 |
Q |
| |
|
||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| || ||||| |||||||||| |||||||| ||||||| |
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|
| T |
31463193 |
acaccgcgttgtatcgcgaaagcaacacaatgttcaattgtttccccacaaatttgagggtttgaaaccatgagagaaaatttgttaatgcgacggctag |
31463292 |
T |
|
| Q |
244 |
gaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatc |
310 |
Q |
| |
|
|||||||| |||||| | || || |||||||||||||||| ||||||| |||||||| ||||||| |
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|
| T |
31463293 |
acaagtgtgcaatccaatttgtgatgaagttgatgaaaacttctctttgtgcttgtttgatttcatc |
31463359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 24 - 340
Target Start/End: Original strand, 40994948 - 40995264
Alignment:
| Q |
24 |
agtgattcaagcgacaatccgagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttggatccgaga |
123 |
Q |
| |
|
||||||||||| || |||||||||||||||| || |||| |||||| ||||| |||||||||| ||| |||| || |||||||| || ||||| |||| |
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| T |
40994948 |
agtgattcaagtgatgatccgagttgataaacctgcgttggcaattggaacaacgcatgtttacaatccaaattgttgtcttcccacttaggatcagaga |
40995047 |
T |
|
| Q |
124 |
aatcaagaattaactctttcacaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtgagagaaaa |
223 |
Q |
| |
|
|||||| |||| |||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||| |
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| T |
40995048 |
aatcaaatgttaaatctttcacgccctgttgtgtcgcaaaagcaacacaaccttcaattgtttccccacaagtttgagggtttgaaatcgtgagagaaaa |
40995147 |
T |
|
| Q |
224 |
cctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttgaatcc |
323 |
Q |
| |
|
| |||| ||| | |||||| || || || |||||| | || ||||||| || |||||||||||| || |||||||| ||| ||| ||| ||||||| |
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| T |
40995148 |
cttgttgatgtcatggctagtgaactgcgcaatccaatttgtgataaagtcgaggaaaacttttctctgcgcttgtttgattttatcggaacttgaatca |
40995247 |
T |
|
| Q |
324 |
acaaagaagttttcatt |
340 |
Q |
| |
|
|| |||||||||||||| |
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| T |
40995248 |
acgaagaagttttcatt |
40995264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 31462661 - 31462341
Alignment:
| Q |
20 |
ttttagtgattcaagcgacaatccgagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttggatcc |
119 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| ||||||||| |||||||| | ||||||||| |||| |||| || || | |||||| ||||| |
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|
| T |
31462661 |
ttttagtgattcaagcaatgatcctagttgataaaaatgtgttgaaaattgaaattacgcatgtttatcatccaaattgttctcataccatttaggatca |
31462562 |
T |
|
| Q |
120 |
gagaaatcaagaattaactctttcacaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtgagag |
219 |
Q |
| |
|
||||||||||| |||| | || | ||| ||||| | |||||||||||| ||| | |||||||| |||||||||||||| ||||||| |||||||| |
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|
| T |
31462561 |
tagaaatcaagagttaaatattgcgtacctcgttgcattgcgaaagcaacaaaacattcgattgtttctccacaagtttgagggttcaaaatcgtgagag |
31462462 |
T |
|
| Q |
220 |
aaaacctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttga |
319 |
Q |
| |
|
||| |||||||| ||||||| ||||||| |||||| | || || |||||| || |||||| ||||||| |||||||| ||||||| |||||||| |
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|
| T |
31462461 |
aaattttgttaatgcaacggctagtgtagtgtgcaatccaatttgtgatgaagttgttgtaaacttctctttgtgcttgtttgatttcatctgaagttga |
31462362 |
T |
|
| Q |
320 |
atccacaaagaagttttcatt |
340 |
Q |
| |
|
||| ||||| ||||||||||| |
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|
| T |
31462361 |
atcgacaaaaaagttttcatt |
31462341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 40 - 340
Target Start/End: Complemental strand, 31476928 - 31476627
Alignment:
| Q |
40 |
atccgagttgataaacatgtgttgacaattgaaacaatgcatgtttaccatcaaaatcattatcttcccattttggatccgagaaatcaagaattaactc |
139 |
Q |
| |
|
|||| |||| |||||||||||||| |||||| || || ||||||||| |||| ||||||||||| | |||||| | ||| |||||||||| | || | || |
|
|
| T |
31476928 |
atcctagttaataaacatgtgttgtcaattggaataacgcatgtttatcatccaaatcattatcataccatttagaatcagagaaatcaaaagtttaatc |
31476829 |
T |
|
| Q |
140 |
tttcacaccccgttgtgtcgcgaaagcaacacaac-taccaattgtttccccacaagtttgaggattcaaaaccgtgagagaaaacctgttaatggcgcg |
238 |
Q |
| |
|
|| || ||| ||||||||| ||||||||||| ||| | | | |||||||||| |||||||||| ||||||||||||||||||| | |||||| || |
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|
| T |
31476828 |
ttccatacctcgttgtgtcacgaaagcaacaaaacattcgatttgtttccccgcaagtttgagtgttcaaaaccgtgagagaaatttttttaatgtgacg |
31476729 |
T |
|
| Q |
239 |
gctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttgaatccacaaagaagttttca |
338 |
Q |
| |
|
|| || |||||||| |||||| | || || |||||| |||||| || | ||||| |||||||| ||||| | |||||||||| ||||| |||||||| |
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|
| T |
31476728 |
gccagtgaagtgtgcaatccaatttgtgatgaagttgttgaaaatttatttttgtgcttgtttgatttcacctaaagttgaatcgacaaaacagttttca |
31476629 |
T |
|
| Q |
339 |
tt |
340 |
Q |
| |
|
|| |
|
|
| T |
31476628 |
tt |
31476627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 31477205 - 31477406
Alignment:
| Q |
120 |
gagaaatcaagaattaactctttcacaccccgttgtgtcgcgaaagcaacacaactaccaattgtttccccacaagtttgaggattcaaaaccgtgagag |
219 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||| |||||||||||||| ||| | |||||||||| |||||||||||| ||| ||||| |||| | |
|
|
| T |
31477205 |
gagaaatcaagagttaaatctttcacacagcgttgtatcgcgaaagcaacataacgttcgattgtttcccaacaagtttgagggttcgaaaccatgaggg |
31477304 |
T |
|
| Q |
220 |
aaaacctgttaatggcgcggctaggaaagtgtgcgatccaactcgtaataaagttgatgaaaacttttctttgttcttgtttgttttcatcagaagttga |
319 |
Q |
| |
|
|||| ||||||| | ||||| ||||||||||||||| | || || || ||||||||||||| ||||||| | |||||| ||||||| ||||||| |
|
|
| T |
31477305 |
aaaatttgttaatatgacagctagtgaagtgtgcgatccaatttgtgatgaaattgatgaaaacttctctttgtgcctgtttgatttcatccaaagttga |
31477404 |
T |
|
| Q |
320 |
at |
321 |
Q |
| |
|
|| |
|
|
| T |
31477405 |
at |
31477406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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