View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14628_low_8 (Length: 342)
Name: NF14628_low_8
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 4559796 - 4559470
Alignment:
| Q |
1 |
agaggatatgagaggaactcgagcacaatgcttgataaaattgaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4559796 |
agaggatatgagaggaactcgagcgcaatgcttgataaaattcaagaaccagaaacatcgaaaagatcgtccagtgttgtggttaagttgatgggactag |
4559697 |
T |
|
| Q |
101 |
aagctcgcccggactcgacgcaaactggtcggacttctgtctgctccaccgataaaaacgagatcatagaaagaactatcacaagtgacgaatacaagaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4559696 |
aagctctcccggactcgacgcaaactggtcggacttctgtctgttccaccgataaaaacgagatcatagaaagaactatcacaggtgacgaatacaagaa |
4559597 |
T |
|
| Q |
201 |
acaccaaagttcggtgtccccaaggaatagaaggggcaataattcaaccataaatgtgaaaccaacttcgcgatttatgctagaaccgccgactcattgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
4559596 |
acaccaaagttcggtgtccccaaggaatagaaggggcaataattcaaccataaatgtgaaaccaacttcgcgatttatgttagaaccgacgactccttgg |
4559497 |
T |
|
| Q |
301 |
aagcaatctgatgcagaccaaaattat |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4559496 |
aagcaatctgatgcagaccaaaattat |
4559470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 5025269 - 5025208
Alignment:
| Q |
43 |
gaagaaccagaaacatcgaaaagatcgtcatgtgttgtggctaagttgatgggactagaagc |
104 |
Q |
| |
|
||||||||||||| | |||||| | ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5025269 |
gaagaaccagaaagtgctaaaagaccatcaagtgttgtggcaaagttgatgggactagaagc |
5025208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University