View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14628_low_9 (Length: 330)
Name: NF14628_low_9
Description: NF14628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14628_low_9 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 48582728 - 48582401
Alignment:
| Q |
1 |
accaccgtatcaatcaaagttaaatactaaaa--ttcctacaatttcaacacaccgactcaaaaatattctagtatcttttacaacgaaagaacaaaaaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48582728 |
accaccgtatcaatcaaagttaaatactaaaaacttcctacaatttcaacacaccgactccaaaatattctagtatcttttacaacgaaagaaccaaaaa |
48582629 |
T |
|
| Q |
99 |
caaaatgccagaatatacaaaggaaaacaattgaggcatcttgaagatattcatgtgtccttcaaattcaattgcatgctaccnnnnnnnnncttttctc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48582628 |
caaaatgccagaatatacaaaggaaaacaattgaggcatcttgaagat-ttcatgtgtccttcaaattcaattgcatgctacctttttttt--ttttctc |
48582532 |
T |
|
| Q |
199 |
ccttgctttctattgtaatgtctgaagttaaatgtttggaataatgatggtcattaaagtgtgtatgcatcatgcatgaccacgtccaactcccaagtga |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48582531 |
ccttgctttctattgtaatgtctgaagttaaatgtttggaataatgatggtcattaaagtgcgtatgcatcatgcatgaccacgt-caactcccaagtga |
48582433 |
T |
|
| Q |
299 |
attttgattccttgctcttagagattttttac |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48582432 |
attttgattccttgctcttagagattttttac |
48582401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 48553274 - 48552950
Alignment:
| Q |
1 |
accaccgtatcaatcaaagttaaatactaaaa--ttcctacaatttcaacacaccgactcaaaaatattctagtatcttttacaacgaaagaaca---aa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| || |
|
|
| T |
48553274 |
accaccgtatcaatcaaagttaaatactaaaaacttcctacaatttcaacacaccgactccaaaatattctagtatcttttacaaagcaagaacatccaa |
48553175 |
T |
|
| Q |
96 |
aaacaaaatgccagaatatacaaaggaaaa--caattgaggcatcttga--agatattca-----tgtgtccttcaaattcaattgcatgctaccnnnnn |
186 |
Q |
| |
|
|||||||||||| | ||||||||||||||| || ||||||||||||| |||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
48553174 |
aaacaaaatgcctggatatacaaaggaaaaagaaactgaggcatcttgaatagatgttcatgtactgtgtccttcaaattcaattgcatgctgcctt--- |
48553078 |
T |
|
| Q |
187 |
nnnncttttctcccttgctttctattgtaatgtctgaagttaaatgtttggaataatgatggtcattaaagtgtgtatgcatcatgcatgaccacgtcca |
286 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| |
|
|
| T |
48553077 |
-----tattttcacttgctttctattgtaatgtctgaagttaaatgtttggaataacgatgatcattaaagtgtgtatgcat----------ctcgtcca |
48552993 |
T |
|
| Q |
287 |
actcccaagtgaattttgattccttgctcttagagattttttac |
330 |
Q |
| |
|
|| ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
48552992 |
ac-cccaagtgaattttgattccttgctatttgagattttttac |
48552950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University