View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_high_11 (Length: 378)
Name: NF14629_high_11
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_11 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 14877998 - 14877664
Alignment:
| Q |
7 |
tcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttg |
106 |
Q |
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| T |
14877998 |
tcctggtcaagctgtctttcatattccatttacaaatgataaaggagagaaaggtttggttataccagtttttttgccaactcaagtcatggagaggttg |
14877899 |
T |
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| Q |
107 |
gttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaagggtgatcacaaatttggcattattaaatcttcgttgtagtcctttaaaa |
206 |
Q |
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| T |
14877898 |
gttaaagagttggatagtgttcttaagaacaacattaaccagcctactaagggtgatcacaaatttggcattattaaatcttcgttgtagtcctttaaat |
14877799 |
T |
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| Q |
207 |
atgtttttgttgaatttgctttgtatcgaatagggttatgtttggtgtgattatatgtatacacactactagatgttgcaaaagaaaaattaccttgatc |
306 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | || |||| ||||||||||| |||||||| ||||||||| |
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| T |
14877798 |
atgtttttgttgaatttgctttttatcg---agggttatgtttggtgtgattatatatgtatacac--ctagatgttgcgcaagaaaaaataccttgatt |
14877704 |
T |
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| Q |
307 |
aaagcaacaccatagtcctttaatttaaattaaaatttta |
346 |
Q |
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| T |
14877703 |
aaagcaacaccatagtcctttaatttaaactaaagtttta |
14877664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 14786128 - 14785943
Alignment:
| Q |
22 |
ctttcatattccttttacaaatgataaaggagagaaaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggat |
121 |
Q |
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| T |
14786128 |
ctttcatatacctttcaaaaatgctaaaggagaggaaggtttggttataccattttattttccaaatcaagtcatggagaggtttgttaaagaaatggat |
14786029 |
T |
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| Q |
122 |
agtgttcttaagaacaacattaaccagcctagtaagggtgatcacaaatttggcattattaaatcttcgttgtagtcctttaaaaa |
207 |
Q |
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| T |
14786028 |
agtgtgcttaagagtaacactaacaagcctactaagtgtgataaaaaatccggtatcattgtttcttcattgtagtcctttaaaaa |
14785943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 14759742 - 14759852
Alignment:
| Q |
7 |
tcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttg |
106 |
Q |
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| T |
14759742 |
tcctggtcaagctgtatttcatatacctttcaaaaatgctaaaggagaagaaggtttggttataccgtttttcttgcctgctcaagtcatggagaggttg |
14759841 |
T |
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| Q |
107 |
gttaaagagtt |
117 |
Q |
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| T |
14759842 |
gttaaagagtt |
14759852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 14767045 - 14766915
Alignment:
| Q |
22 |
ctttcatattccttttacaaatgataaaggagagaaaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggat |
121 |
Q |
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|||| |||| ||||| | ||||| |||||||||| ||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||| ||| |
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| T |
14767045 |
cttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagat |
14766946 |
T |
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| Q |
122 |
agtgttcttaagaacaacattaaccagccta |
152 |
Q |
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| T |
14766945 |
agtgtgcttaagaacaacatcaaccaaccta |
14766915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 14873217 - 14873113
Alignment:
| Q |
57 |
aaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaa |
156 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||||| |||| || |
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| T |
14873217 |
aaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtgtgcttaagaacaaaattaaccaacctactat |
14873118 |
T |
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| Q |
157 |
gggtg |
161 |
Q |
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| T |
14873117 |
gggtg |
14873113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 84038 - 83864
Alignment:
| Q |
27 |
atattccttttacaaatgataaaggagagaaaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgt |
126 |
Q |
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|||| ||||||| ||||| |||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| || |
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| T |
84038 |
atataccttttaaaaatgctaaaggagaggaaggttttgttataccagttttttttccaactcaagtcatcgagaggttggttaaagagttggataaagt |
83939 |
T |
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| Q |
127 |
tcttaagaacaacattaaccagcctagtaagggtgatcacaaatttggcattattaaatcttcgttgtagtcctt |
201 |
Q |
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||||||||||||||||||| ||||| || ||||||| |||| ||| || ||||| ||||||||||||||||| |
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| T |
83938 |
tcttaagaacaacattaactcgcctactatgggtgatagaaaatctggaatcattaattcttcgttgtagtcctt |
83864 |
T |
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