View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_high_13 (Length: 362)
Name: NF14629_high_13
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 45095271 - 45094932
Alignment:
| Q |
9 |
aatattaagggtagatattaaccactgatgatgtgggtatcaatggttaagatctccacattattccctcaaattttgtttttcaattgagacaacctac |
108 |
Q |
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| T |
45095271 |
aatattaagggtagatattaaccactgatgatgtgggtatcaatggttaagatctccacattattccctcaaattttgtttttcaattgagacaacctac |
45095172 |
T |
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| Q |
109 |
tcatgttaataagtttatgggcaattagccacaacattgaattatttccttcaactaagtcgtatgagcaagatattagttggttaagttcataatgtac |
208 |
Q |
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| T |
45095171 |
tcatgttaataagtttatgggcaattagccacaacattgaattatttccttcaactaagtcgtatgagcaagatattagttggttaagttcataatgtac |
45095072 |
T |
|
| Q |
209 |
aaaggaaaaggtacaaaagttatcgagtgtatgagattgagaggatgcttaattctttttggtggggtgcaaaatgagaaggtagaaaaaataccacgtg |
308 |
Q |
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| T |
45095071 |
aaaggaaaaggtacaaaagttatcgagtgtatgagattgagaggatgcttaattctttttggtggggtgcaaaatgagaaggtagaaaaaataccacgtg |
45094972 |
T |
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| Q |
309 |
gatgaggtacgaaaaatttacgatggagaaaggatgagga |
348 |
Q |
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| T |
45094971 |
gatgaggtacgaaaaatttacgatggagaaaggatgagga |
45094932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 33029420 - 33029361
Alignment:
| Q |
12 |
attaagggtagatattaaccactgatgatgtgggtatcaatggttaagatctccacatta |
71 |
Q |
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| T |
33029420 |
attaagggtagatcttaaccattgataatgtggagatcaatggtcaacatctccacatta |
33029361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 26919517 - 26919571
Alignment:
| Q |
47 |
atcaatggttaagatctccacattattccctcaaattttgtttttcaattgagac |
101 |
Q |
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| T |
26919517 |
atcaatggttaagatctccacaagattccctcaattttttttcttcaattgagac |
26919571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 55696110 - 55696057
Alignment:
| Q |
47 |
atcaatggttaagatctccacattattccctcaaattttgtttttcaattgaga |
100 |
Q |
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| T |
55696110 |
atcaatggttaagatctcctcattatttcctcaagttttttttcccaattgaga |
55696057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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