View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14629_high_2 (Length: 627)
Name: NF14629_high_2
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 253 - 625
Target Start/End: Original strand, 46628736 - 46629112
Alignment:
| Q |
253 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacagatatgtactatttaacata |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46628736 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacatatatgtactatttaacata |
46628835 |
T |
|
| Q |
353 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628836 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
46628935 |
T |
|
| Q |
453 |
ccaacagaacaccttgtaaaatgggggagc--atatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628936 |
ccaacagaacaccttgtaaaatgggggagcatatatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
46629035 |
T |
|
| Q |
551 |
caaatatgcaaattaattacttactctat--tatgaataagatgggcctatagctattaatttgatgtatacctatg |
625 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46629036 |
caaatatgcaaattaattacttactctattatatgaataagatgggcctatagctattaatttgatgtatacctatg |
46629112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 46628477 - 46628697
Alignment:
| Q |
19 |
tctcctacaggccccacttggagaggatcttctgcattcagatatcagattatgttttaaacatgtcttctttacgtaccatataagaactttccaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628477 |
tctcctacaggccccacttggagaggatcttctgcattcagatatcagattatgttttaaacatgtcttctttacgtaccatataagaactttccaagaa |
46628576 |
T |
|
| Q |
119 |
aatgcatcatcactggcccatcttatattacatgcttttggacttttgggttggattcgttgaatgattgctatactagtttttaaccatagaatagaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628577 |
aatgcatcatcactggcccatcttatattacatgcttttggacttttgggttggattcgttgaatgattgctatactagtttttaaccatagaatagaag |
46628676 |
T |
|
| Q |
219 |
caaatttttcatcaaatattg |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46628677 |
caaatttttcatcaaatattg |
46628697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University