View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_high_35 (Length: 220)
Name: NF14629_high_35
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 49382152 - 49381950
Alignment:
| Q |
1 |
aattaatcatattagcagctagtttagtgcatgttaatttgtaatcacgataaattttacaaagtcaagtagcactgtgattttgttgaagctagaaagt |
100 |
Q |
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| T |
49382152 |
aattaatcatattagcagctagtttagtgcatgttaatttgtaatcacgataaattttacaaagtcaagtagcactgtgattttgttgaagctagaaagt |
49382053 |
T |
|
| Q |
101 |
gtaacttttgtctaaattacggtgacacgttgtaactttgtcaaactcatggttgatccatgcatgaacttacttgtttgatgtgtgaatgcttctgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49382052 |
gtaacttttgtctaaattacggtgacacgttgtaactttgtcaaactcatggttgatccatgcatgaacttacttgtttgatgtgtgaatgcttctgttc |
49381953 |
T |
|
| Q |
201 |
ttc |
203 |
Q |
| |
|
||| |
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|
| T |
49381952 |
ttc |
49381950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 28453238 - 28453190
Alignment:
| Q |
71 |
agcactgtgattttgttgaagctagaaagtgtaacttttgtctaaatta |
119 |
Q |
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| T |
28453238 |
agcactgtgattttgtttaagctctaaagtgtaacttttgtcaaaatta |
28453190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 7873091 - 7873133
Alignment:
| Q |
78 |
tgattttgttgaagctagaaagtgtaacttttgtctaaattac |
120 |
Q |
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| T |
7873091 |
tgattttgttgaagctataaaatgtaacttttgtcaaaattac |
7873133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 46090029 - 46090113
Alignment:
| Q |
38 |
tttgtaatcacgataaattttacaaagtca-agtagcactgtgattttgttgaagctagaaagtgtaacttttgtctaaattacg |
121 |
Q |
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|||| ||||||| ||||||| ||||| ||| |||||||| |||||||||||||||||| | ||||| |||||||| ||| |||| |
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| T |
46090029 |
tttggaatcacggtaaatttaacaaaatcatagtagcaccgtgattttgttgaagctatgaggtgtagcttttgtcaaaagtacg |
46090113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 8472592 - 8472554
Alignment:
| Q |
72 |
gcactgtgattttgttgaagctagaaagtgtaacttttg |
110 |
Q |
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| T |
8472592 |
gcactgtgattttgttgaagctacaaagtgtagcttttg |
8472554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 19413416 - 19413371
Alignment:
| Q |
72 |
gcactgtgattttgttgaagctagaaagtgtaacttttgtctaaat |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||| |
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|
| T |
19413416 |
gcactgtcattttgttgaagctccaaagtgtaacttttgtcaaaat |
19413371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 30007497 - 30007536
Alignment:
| Q |
78 |
tgattttgttgaagctagaaagtgtaacttttgtctaaat |
117 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||| |
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| T |
30007497 |
tgattttgttgaagctcgaaagtgtaacttttgtcaaaat |
30007536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 20526548 - 20526505
Alignment:
| Q |
75 |
ctgtgattttgttgaagctagaaagtgtaacttttgtctaaatt |
118 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||| |||| |
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|
| T |
20526548 |
ctgtgatttcgttgaagctcgaaagtgtaacttttgtctgaatt |
20526505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 23955571 - 23955531
Alignment:
| Q |
72 |
gcactgtgattttgttgaagctagaaagtgtaacttttgtc |
112 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||| |
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| T |
23955571 |
gcactgtgattttgttgaagctttaaaatgtaacttttgtc |
23955531 |
T |
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