View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_high_6 (Length: 468)
Name: NF14629_high_6
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 41654621 - 41654170
Alignment:
| Q |
1 |
aaacccttgaaaaggactaggctggaactcatgcaattatggaatggaacctagtaatggtaaaggataagacggagagttatactaatctttcatggta |
100 |
Q |
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| T |
41654621 |
aaacccttgaaaaggactaggctggaactcatgcaattatggaatggaacctagtaatggtaaaggataagacggagagttatactaatctttcatggta |
41654522 |
T |
|
| Q |
101 |
attataaaatcctatagaataaaatgaatagatacaaagaaaagaactataagggcagacacctgtcaatattcactggatggatagatgcatgatgaac |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41654521 |
attataaaatcctatagaataaaatgaatagttacaaagaaaagaactataagggcagacacctgtcaatattcacttgatggatagatgcatgatgaac |
41654422 |
T |
|
| Q |
201 |
aatctctcaaattgttacccaataaagatatatcatgcaattcttacattcttttattggaactaacatcatgca-nnnnnnnnncctatttcatatccc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41654421 |
aatctctcaaattgttacccaataaagatatatcatgcaattcttacattcttttattggaactaacatcatgcattttttttttcctatttcatatccc |
41654322 |
T |
|
| Q |
300 |
caccagacaacttaactactctgaagcatgtatcgtgtagaaacacatcgcatcaacaacttaactcacttaccatgaaaagagttcacagctttattag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654321 |
caccagacaacttaactactctgaagcatgtatcgtgtagaaacacatcgcatcaacaacttaactcacttaccatgaaaagagttcacagctttattag |
41654222 |
T |
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| Q |
400 |
cctcctcaggagtggagaagcacacaaaaccaaatcctttgcttatcccttt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654221 |
cctcctcaggagtggagaagcacacaaaaccaaatcctttgcttatcccttt |
41654170 |
T |
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