View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_high_7 (Length: 448)

Name: NF14629_high_7
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_high_7
NF14629_high_7
[»] chr8 (4 HSPs)
chr8 (1-104)||(21272241-21272344)
chr8 (143-208)||(21272343-21272408)
chr8 (358-431)||(18975080-18975152)
chr8 (358-401)||(14368086-14368129)
[»] chr7 (2 HSPs)
chr7 (358-431)||(5330722-5330794)
chr7 (318-361)||(39615686-39615729)
[»] chr3 (2 HSPs)
chr3 (358-431)||(19806533-19806605)
chr3 (358-401)||(10814640-10814683)
[»] chr5 (2 HSPs)
chr5 (318-354)||(1581247-1581283)
chr5 (318-354)||(1603532-1603568)
[»] chr6 (1 HSPs)
chr6 (358-401)||(19575427-19575470)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 21272241 - 21272344
Alignment:
Q  1 cggcagtgatattaagtggttttggtttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272241 cggcagtgatattaagtggttttgttttcaatctaaattgcctttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagc 21272340  T
Q  101 ttta 104  Q
    ||||    
T  21272341 ttta 21272344  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 21272343 - 21272408
Alignment:
Q  143 tatttcacattcaatatgatgggtgtagaaaaaggtcctctttcgtctgtaggtaatgtatataaa 208  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21272343 tatttcacattcaatatgatgggtgtagaaaaaggtactctttcgtctgtaggtaatgtatataaa 21272408  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 18975080 - 18975152
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 431  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  18975080 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcct 18975152  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 14368086 - 14368129
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatat 401  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  14368086 ctttattagcttgagaaggaacattggacttagattttccatat 14368129  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 5330794 - 5330722
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 431  Q
    |||||||| |||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||| ||||    
T  5330794 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcattagcct 5330722  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 39615729 - 39615686
Alignment:
Q  318 agctataaacttgtttatttgtgtctgcatttaactggtacttt 361  Q
    |||||||||||||||||||| | ||||||||||||| |||||||    
T  39615729 agctataaacttgtttatttctttctgcatttaactagtacttt 39615686  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 19806605 - 19806533
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatatgttgcagtttttgctttctttcattggcct 431  Q
    |||||||| ||| |||||||||||| |||||||||||||||||| || |||  |||||||||||||||| ||||    
T  19806605 ctttattagcttaagaaggaacattggacttagattttccatatatt-cagaatttgctttctttcattagcct 19806533  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 10814683 - 10814640
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatat 401  Q
    |||||||| |||||||||||||||| |||||||| |||||||||    
T  10814683 ctttattagcttgagaaggaacattggacttagactttccatat 10814640  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 1581247 - 1581283
Alignment:
Q  318 agctataaacttgtttatttgtgtctgcatttaactg 354  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1581247 agctataaacttgtttatttgtttctgcatttaactg 1581283  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 1603568 - 1603532
Alignment:
Q  318 agctataaacttgtttatttgtgtctgcatttaactg 354  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1603568 agctataaacttgtttatttgtttctgcatttaactg 1603532  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 19575470 - 19575427
Alignment:
Q  358 ctttattatcttgagaaggaacattcgacttagattttccatat 401  Q
    |||||||| |||||||||||||||| |||||||||||| |||||    
T  19575470 ctttattagcttgagaaggaacattggacttagatttttcatat 19575427  T

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