View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_high_9 (Length: 389)
Name: NF14629_high_9
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 6075209 - 6074940
Alignment:
| Q |
5 |
acacatccatttcttttgaaaaatgaagaagatcttaactaggtagccatataagatccaatttcgtgtttgaaccgttagtatttttctgaattaaaaa |
104 |
Q |
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| T |
6075209 |
acacatccatttcttttgaaaaatgaagaagatcttaactaggtagccatataagatccaatttcgtgtttgaaccgttagtatttttctgaattaaaaa |
6075110 |
T |
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| Q |
105 |
atgagatatatgttgttttggtgggaggcgtgagatagttaacgtgtggagtgattaagatggcaagcatttggttccgctttcggtataatgataacga |
204 |
Q |
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| T |
6075109 |
atgagatatatgttgttttggtgggtggcgtgagatagttaacgtgtggagtgattaagatggcaagcgtttggttccgctttcggtataatgataacga |
6075010 |
T |
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| Q |
205 |
tatttnnnnnnntcttttgatttgattaaataataaacatgtaattgacttgcaaataaaccttcacgaa |
274 |
Q |
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| T |
6075009 |
tatttaaaaaaatcttttgatttgattaaataataaacatgtaaatgacttgcaaataaaccttcacgaa |
6074940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 6074376 - 6074274
Alignment:
| Q |
274 |
attcataagtgatccatttgtagacatcatttggtgttgtgcagcgtcatgctgtaacagatctcaaccgttcgatctctaatcgatgattgagatcaaa |
373 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
6074376 |
attcataagtgatccatttgtagacatgatttcgtgttgtacagcgtcatgctataacagatctcaatcgtccgatctctaatcgatgattgagatcaaa |
6074277 |
T |
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| Q |
374 |
ctg |
376 |
Q |
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||| |
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| T |
6074276 |
ctg |
6074274 |
T |
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