View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_10 (Length: 435)
Name: NF14629_low_10
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 330 - 414
Target Start/End: Complemental strand, 10361831 - 10361747
Alignment:
| Q |
330 |
tatattgagacaaagaatacaaaattgtaagagtcattaaagtggttcccagaacatcacctccatcaggtgcagccattgcttc |
414 |
Q |
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| T |
10361831 |
tatattgagacaaagaatacaaaattgtaagagtcattaaagtggttcccagaacatcacctccatcaggtgcagccattgcttc |
10361747 |
T |
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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 36473992 - 36473888
Alignment:
| Q |
157 |
gcatcatcacgaatacacgtctcaattctcactcggttcatggatgaaaagaacgagacatcaatgttgcatttatagcgaccggttgctggcttttccc |
256 |
Q |
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| T |
36473992 |
gcatcatcacgaata----tctcaattcctactttgttcatagatgaagagaacgaggcatcaatgttgcatttgcaacgcccggttactggcttttccc |
36473897 |
T |
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| Q |
257 |
accgtatca |
265 |
Q |
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| T |
36473896 |
accgtatca |
36473888 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 36474041 - 36474007
Alignment:
| Q |
94 |
tcccctatatcaacatcacaaagaggggcaaacca |
128 |
Q |
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| T |
36474041 |
tcccctatatcaacatcacaaagaggggaaaacca |
36474007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 8267107 - 8267005
Alignment:
| Q |
155 |
ctgcatcatcacgaatacacgtctcaattctcactcggttcatggatgaaaagaacgagacatcaatgttgcatttatagcgaccggttgctggcttttc |
254 |
Q |
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| T |
8267107 |
ctgcatcatcacgaatacacatcccaattcctactatgttcggggatgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttc |
8267008 |
T |
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| Q |
255 |
cca |
257 |
Q |
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||| |
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| T |
8267007 |
cca |
8267005 |
T |
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