View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_11 (Length: 417)

Name: NF14629_low_11
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_11
NF14629_low_11
[»] chr2 (9 HSPs)
chr2 (1-415)||(821350-821764)
chr2 (1-189)||(973652-973840)
chr2 (1-200)||(410494-410693)
chr2 (1-102)||(957809-957910)
chr2 (1-110)||(965166-965275)
chr2 (1-114)||(1400032-1400142)
chr2 (1-114)||(1403750-1403863)
chr2 (221-298)||(957656-957733)
chr2 (353-413)||(962423-962483)
[»] chr3 (1 HSPs)
chr3 (7-305)||(45810009-45810306)
[»] chr7 (2 HSPs)
chr7 (1-195)||(12105524-12105718)
chr7 (1-207)||(28449405-28449608)
[»] chr6 (2 HSPs)
chr6 (1-221)||(10116363-10116579)
chr6 (352-413)||(10114621-10114682)
[»] chr1 (2 HSPs)
chr1 (55-202)||(48675085-48675232)
chr1 (72-221)||(22068491-22068639)
[»] chr5 (2 HSPs)
chr5 (56-116)||(36199394-36199454)
chr5 (178-230)||(36199516-36199569)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 821350 - 821764
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821350 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 821449  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821450 ctatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 821549  T
Q  201 acatatatgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttggtggtttgatgaaatatgtg 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  821550 acatatacgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaactgttcgatttggtggttttatgaaatatgtg 821649  T
Q  301 ctgttatgaaagtcgtcctaaactttgtctcggtgcacaaattaagaaatattttatttaatgcaagtgacttatgagtagtgaaatcttttcattactc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821650 ctgttatgaaagtcgtcctaaactttgtctcggtgcacaaattaagaaatattttatttaatgcaagtgacttatgagtagtgaaatcttttcattactc 821749  T
Q  401 ttctatttctatttt 415  Q
    |||||||||||||||    
T  821750 ttctatttctatttt 821764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 973840 - 973652
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    |||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||| |||    
T  973840 cttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagttttacaaa 973741  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca 189  Q
    |||||| |||||||||||||| ||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  973740 ctatgaaaatctggagcaacagtaaacgatctgatatagaaagtcaattatctccatgcccaaaggcttctgcaacatgtcagctttca 973652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 410494 - 410693
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||||||| |||||||| ||| ||||||||| ||||  |  ||||||||||||||||| ||||||||| |||||||| |||||||||  ||    
T  410494 cttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaa 410593  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 200  Q
    ||||||| |||| | ||||||| ||||| | | || ||||||| | ||||||  |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  410594 ctatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatttattgata 410693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 957910 - 957809
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||| |||||||||||||||||||||||||||||||||    
T  957910 cttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaatgcgagagttttagaaa 957811  T
Q  101 ct 102  Q
    ||    
T  957810 ct 957809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 965275 - 965166
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    |||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||||| |||||| |||||||||| ||||||| |||||||||||||    
T  965275 cttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaa 965176  T
Q  101 ctatgacaat 110  Q
    ||||| ||||    
T  965175 ctatgtcaat 965166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1400032 - 1400142
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||| ||||||||||||||    || |||||||||| |||||| ||||||||||||||  ||||||||| ||||||| |||||||||||||    
T  1400032 cttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcgcattatgttagcaaggtttattctgcagaatgcaagagttttagaaa 1400128  T
Q  101 ctatgacaatctgg 114  Q
    ||||| ||||||||    
T  1400129 ctatgccaatctgg 1400142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1403750 - 1403863
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||| ||||||||||||||   ||| || ||||||  |||||| ||||||||||||||  ||||||||| | ||||| |||||||||||||    
T  1403750 cttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattctggataatgcaagagttttagaaa 1403849  T
Q  101 ctatgacaatctgg 114  Q
    ||||| ||||||||    
T  1403850 ctatgtcaatctgg 1403863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 957733 - 957656
Alignment:
Q  221 attatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttggtggtttgatgaaatatg 298  Q
    ||||||||  ||||||| || |||||| ||||  ||||||||||||||||||| ||||| ||||||||||||| ||||    
T  957733 attattttctctattctgtcttttgtttcattagcttctaccatgaaattgttggatttagtggtttgatgaactatg 957656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 962483 - 962423
Alignment:
Q  353 tttatttaatgcaagtgacttatgagtagtgaaatcttttcattactcttctatttctatt 413  Q
    ||||||||||||| |  | ||||||||| ||||||||||| | | ||||||||||||||||    
T  962483 tttatttaatgcacggaagttatgagtattgaaatcttttaactcctcttctatttctatt 962423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 45810306 - 45810009
Alignment:
Q  7 acttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaactatga 106  Q
    |||||||||||||||||||||||| ||||||||  |||| |||||||  ||||||||||||  ||||||||||||||||| | |||||||||||||||||    
T  45810306 acttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatga 45810207  T
Q  107 caatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgataacatat 206  Q
    |||| ||| ||| ||  ||||  | | |||||||||  | ||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  45810206 caatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttcaatttattgataacatat 45810107  T
Q  207 atgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttggtggtttgatgaaatatgtgctgtt 305  Q
    |||| |||||||||| ||||||  |||||||||| |||||| ||||  |||||||| |||||||||| |||||||  |||||||||| | |||||||||    
T  45810106 atga-tatgtaagtagtattttctctattctctcctttgtttcattagcttctaccttgaaattgttggatttggctgtttgatgaactgtgtgctgtt 45810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 12105524 - 12105718
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    |||| |||||| || || || ||||||||| ||| ||||| |||  || |||||||||||||||||| |||||||||||||||| | | |||||||||||    
T  12105524 cttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaattcaacagttttagaaa 12105623  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttat 195  Q
     |||| |||||||| ||  |   ||||| | |||||||||||| |||||| |  | ||  |||| |||||||||||||||||||||||| |||||    
T  12105624 atatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttcaatttat 12105718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 28449608 - 28449405
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||||||||| |||||||||||| ||| || || ||||   ||| |||||||| |||||| || |||||| || ||||| ||||||||| |||    
T  28449608 cttacaacttgcactattcgggactttgcatttgtagacctacaa---aatgacattatgctagcaagatatattcttaataatgcaagagttttacaaa 28449512  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 200  Q
    | ||||  || |||||  | ||  |||||  | ||||||||||   ||||||  |||| |||||||| ||  |||| |||||||||||| ||||||||||    
T  28449511 ccatgatgatatggagtgataaagaacaacctcaaatagaaagggaattatcctcatgtccaagggcatccacaacttgtcaactttcagtttattgata 28449412  T
Q  201 acatata 207  Q
    || ||||    
T  28449411 acgtata 28449405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10116579 - 10116363
Alignment:
Q  1 cttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaatgcgagagttttagaaa 100  Q
    ||||||||||| ||||||||||| |||| | || |||||| ||| ||| ||||||||||| |||| |  ||||||||  |||||||||||||||||||||    
T  10116579 cttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagttttagaaa 10116480  T
Q  101 ctatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttcattttattgata 200  Q
    ||||| |||||||| |   |   ||||  | | ||||||||||    |||||  |||| |||||||||||| |||||||| ||||||||    ||| | |    
T  10116479 ctatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca----attaaaa 10116384  T
Q  201 acatatatgattatgtaagta 221  Q
    |||||||||||||||||||||    
T  10116383 acatatatgattatgtaagta 10116363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 10114682 - 10114621
Alignment:
Q  352 ttttatttaatgcaagtgacttatgagtagtgaaatcttttcattactcttctatttctatt 413  Q
    |||| ||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||    
T  10114682 ttttttttaatgcaaaagacttatgagtagtgaaatcttttcactcctcttctatttctatt 10114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 48675232 - 48675085
Alignment:
Q  55 attatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctc 154  Q
    ||||||||||||| || |||||| || ||||| | ||||||| ||||||||||||| |||||| ||||  | |||  | ||||||||||   ||||||      
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  155 catgcccaagggcttctgcaacatgtcaactttcattttattgataac 202  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  48675132 catgtccaagggcctctgcaacatgtcaactttcagtttattgataac 48675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 22068491 - 22068639
Alignment:
Q  72 tattctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttct 171  Q
    |||| |||||||| |||||  ||||||||  |||| ||| |||||||  | | |||||  ||||||||||||   ||| ||| ||||||||| |||||||    
T  22068491 tattttgaagaattcgagaaatttagaaatcatgataatttggagcagaagtgaacaacctgaaatagaaagaaaattgtctgcatgcccaaaggcttct 22068590  T
Q  172 gcaacatgtcaactttcattttattgataacatatatgattatgtaagta 221  Q
     |||||||| |||||| | |||| ||||| ||| || || ||||||||||    
T  22068591 acaacatgtgaacttttagtttagtgatagcattta-gactatgtaagta 22068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 36199394 - 36199454
Alignment:
Q  56 ttatgttagcaatatttattctgaagaatgcgagagttttagaaactatgacaatctggag 116  Q
    |||||||||||| || |||||| || ||||| ||||||||| ||||||||||||| |||||    
T  36199394 ttatgttagcaagatatattctaaataatgcaagagttttacaaactatgacaatatggag 36199454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 36199516 - 36199569
Alignment:
Q  178 tgtcaactttcattttattgataacatatatgat-tatgtaagtattatttttc 230  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||| || |||||    
T  36199516 tgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttc 36199569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University