View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_14 (Length: 378)

Name: NF14629_low_14

Description: NF14629

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14629_low_14

[»] chr2 (3 HSPs)

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 3)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 126; E-Value: 7e-65

Query Start/End: Original strand, 216 - 378

Target Start/End: Original strand, 42498989 - 42499151

Alignment:

Q	216	tgaacatagtcaaatggactggatagtataccttttagctgtgtnnnnnnnggctcttgaacatgaatttgaaaggaaacactcttgaaaacctgttgaa	315	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42498989	tgaacatagtcaaatggactggatagtataccttttagctgtgtaaaaaaaggctcttgaacatgaatttgaaaggaaacactcttgaaaacctgttgaa	42499088	T

Q	316	acaaacaagaaacataatatattacactgaatgaaagatagaaatgaagcaattagcataaca	378	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	42499089	acaaacaagaaacatcatatattacactgaatgaaagacacaaatgaagcaatttgcataaca	42499151	T

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Target: chr2; HSP #2

Raw Score: 108; E-Value: 4e-54

Query Start/End: Original strand, 67 - 178

Target Start/End: Original strand, 42498878 - 42498989

Alignment:

Q	67	cctggtgtatttgccagtggcacacctcccctcaattgttttcaggccatctgcaggcaataacatcataagacgttattatcatttagggaaagtagaa	166	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	42498878	cctggtgtatttgccagtggcacacctcccctcaattgttttcaggccatctgcaggcaataacatcataagacgttattatcatttagggacagtagaa	42498977	T

Q	167	tagataaatatt	178	Q
		\|\|\|\|\|\|\|\|\|\|\|\|
T	42498978	tagataaatatt	42498989	T

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Target: chr2; HSP #3

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 5 - 41

Target Start/End: Original strand, 42498810 - 42498846

Alignment:

Q	5	ataggacgatggttataaatatctggacacatatttg	41	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	42498810	ataggacgatggttataaatatctggacaaatatttg	42498846	T

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