View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_16 (Length: 364)
Name: NF14629_low_16
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 51024695 - 51024367
Alignment:
| Q |
19 |
gttctacaggaacaagagcaagtgaattatctgcttttggtgagttatactcttcaccactgagcagatcccatttgggatcaactttcactggaggagc |
118 |
Q |
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| T |
51024695 |
gttctacaggaacaagagcaagtgaattatctgcttttggtgagttatactcttcaccactgagcagatcccatttgggatcaacttttactggaggagc |
51024596 |
T |
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| Q |
119 |
cgaaccatttgatgtagagggtgcaggaagcaacaattgattaaatgtttgagaccctgcttcagcactagaagatgatctgtnnnnnnncatattaact |
218 |
Q |
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| T |
51024595 |
cgaaccatttgatgtagagggtgcaggaagcaacaattgattaaatgtttgagaccctgcttcagcactagaagatgatctgtaaaaaaacatattaact |
51024496 |
T |
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| Q |
219 |
tgagagccatataatataaccaaaaggcaccagacaggtttagtcaacttgaaatgcttttcgacaccaatctatttctgcatgtttataaattatactt |
318 |
Q |
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| T |
51024495 |
tgagagccatataatataaccaaaaggcaccagacaggtttagtcaacttgaaatgcttttcgacaccaatctatttctgcatgt-------ttatactt |
51024403 |
T |
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| Q |
319 |
aatatacacaaatctgcagccaaaactaagcctatg |
354 |
Q |
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| T |
51024402 |
aatatacacaaatcttcagccaaaactaagcctatg |
51024367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 8801606 - 8801773
Alignment:
| Q |
26 |
aggaacaagagcaagtgaattatctgcttttggtgagttatactcttcaccactgagcagatcccatttgggatcaactttcactggaggagccgaacca |
125 |
Q |
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| T |
8801606 |
aggaacaagagcaagtgaagtatctgcttttggtgagtcatagttatcaccactgagcaggtcccacttgggatcagctttggcaggtacagctgaacca |
8801705 |
T |
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| Q |
126 |
tttgatgtagagggtgcaggaagcaacaattgattaaatgtttgagaccctgcttcagcactagaaga |
193 |
Q |
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| T |
8801706 |
ttggatgtagctggtgcaggaagcattaattgattcaatgtttgggaccctgcttcagcaccagaaga |
8801773 |
T |
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