View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_19 (Length: 342)
Name: NF14629_low_19
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 45738231 - 45738556
Alignment:
| Q |
1 |
tctcacaaacaatatctaaaatgattacgtcactaagtaaactcaaataataaatcaatccaaacatgtcttcaatgctgaaacttgaaaatgagttaag |
100 |
Q |
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| T |
45738231 |
tctcacaaacaatatctaaaatgattacgtcactaagtaaactcaaataataaatcaatccaaacatgtcttaaatgctgaaacttgaaaatgagttaag |
45738330 |
T |
|
| Q |
101 |
aaaagagataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattatccataaccaaacgagccaaagaaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45738331 |
aaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattgtccataaccaaacgagccaaagaaa |
45738430 |
T |
|
| Q |
201 |
cagcattaacgacagtagtaagaccagaaacagcaccacatttcatagtgttcccatccataatagaagcttccatttcaaccgtgcctttgttggtaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45738431 |
cagcattaacgacagtagtaagaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaag |
45738530 |
T |
|
| Q |
301 |
aacagaacctcttccagcgttgaagt |
326 |
Q |
| |
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| T |
45738531 |
aacagaacctcttccagcgttgaagt |
45738556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 87 - 326
Target Start/End: Original strand, 45732847 - 45733086
Alignment:
| Q |
87 |
gaaaatgagttaagaaaagagataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattatccataaccaa |
186 |
Q |
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| T |
45732847 |
gaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagctaaataaatatgaggagtattatccataaccaa |
45732946 |
T |
|
| Q |
187 |
acgagccaaagaaacagcattaacgacagtagtaagaccagaaacagcaccacatttcatagtgttcccatccataatagaagcttccatttcaaccgtg |
286 |
Q |
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| T |
45732947 |
acgagccaaagaaatagcattgacaacggtgctaagaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtg |
45733046 |
T |
|
| Q |
287 |
cctttgttggtaagaacagaacctcttccagcgttgaagt |
326 |
Q |
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| T |
45733047 |
cctttgttggtaagaacagaacctcttccagcgttgaagt |
45733086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 45738169 - 45738230
Alignment:
| Q |
6 |
caaacaatatctaaaatgattacgtcactaagtaaactcaaataataaatcaatccaaacat |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45738169 |
caaacaatatctaaaatgattacgacactaagtaaactcaaataataaatcaatccaaacat |
45738230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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