View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_20 (Length: 341)

Name: NF14629_low_20
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_20
NF14629_low_20
[»] chr4 (17 HSPs)
chr4 (1-327)||(45737891-45738217)
chr4 (51-302)||(45732527-45732763)
chr4 (1-49)||(45738236-45738284)
chr4 (162-245)||(24193465-24193549)
chr4 (80-119)||(5131259-5131298)
chr4 (60-119)||(7693999-7694058)
chr4 (80-119)||(19429731-19429770)
chr4 (68-114)||(1137739-1137785)
chr4 (65-107)||(8469371-8469413)
chr4 (123-244)||(24443919-24444040)
chr4 (78-116)||(46110228-46110266)
chr4 (82-114)||(2592320-2592352)
chr4 (82-114)||(14011261-14011293)
chr4 (80-116)||(33534178-33534214)
chr4 (79-119)||(35405969-35406009)
chr4 (49-113)||(37575914-37575978)
chr4 (79-111)||(43824313-43824345)
[»] chr6 (11 HSPs)
chr6 (54-114)||(4420670-4420730)
chr6 (68-113)||(6536975-6537020)
chr6 (54-113)||(9027606-9027665)
chr6 (68-114)||(6647414-6647460)
chr6 (80-114)||(27909647-27909681)
chr6 (81-114)||(7785754-7785787)
chr6 (203-244)||(14340951-14340992)
chr6 (68-113)||(34403883-34403928)
chr6 (196-244)||(7931928-7931976)
chr6 (81-113)||(20512654-20512686)
chr6 (87-119)||(32171489-32171521)
[»] chr7 (11 HSPs)
chr7 (60-114)||(7244707-7244761)
chr7 (54-120)||(12234872-12234938)
chr7 (55-119)||(9423578-9423642)
chr7 (203-243)||(22388052-22388092)
chr7 (67-111)||(44151476-44151520)
chr7 (49-105)||(45078314-45078370)
chr7 (68-115)||(34754807-34754854)
chr7 (79-113)||(26935565-26935599)
chr7 (205-242)||(2380226-2380263)
chr7 (49-114)||(48157098-48157163)
chr7 (204-244)||(12835086-12835126)
[»] chr2 (7 HSPs)
chr2 (68-114)||(1647263-1647309)
chr2 (46-114)||(24098129-24098197)
chr2 (54-114)||(31739955-31740015)
chr2 (54-114)||(34652019-34652079)
chr2 (79-113)||(7871671-7871705)
chr2 (50-114)||(27237872-27237936)
chr2 (87-119)||(41817190-41817222)
[»] chr8 (19 HSPs)
chr8 (79-120)||(12851197-12851238)
chr8 (55-114)||(4055600-4055659)
chr8 (68-119)||(20672772-20672823)
chr8 (79-114)||(30918140-30918175)
chr8 (80-119)||(31705107-31705146)
chr8 (68-119)||(41606900-41606951)
chr8 (80-114)||(8062356-8062390)
chr8 (60-114)||(25869255-25869309)
chr8 (123-244)||(35869718-35869839)
chr8 (212-245)||(9380013-9380046)
chr8 (81-114)||(11183572-11183605)
chr8 (49-114)||(12361219-12361284)
chr8 (204-248)||(787657-787701)
chr8 (79-119)||(2458574-2458614)
chr8 (81-113)||(6950350-6950382)
chr8 (79-119)||(8060691-8060731)
chr8 (67-119)||(8535766-8535818)
chr8 (123-151)||(34788495-34788523)
chr8 (79-119)||(42215314-42215354)
[»] chr3 (13 HSPs)
chr3 (68-113)||(45432936-45432981)
chr3 (54-114)||(31010429-31010489)
chr3 (46-109)||(36887536-36887599)
chr3 (80-114)||(21862184-21862218)
chr3 (81-114)||(5292530-5292563)
chr3 (203-248)||(42530111-42530156)
chr3 (87-116)||(43115081-43115110)
chr3 (48-105)||(52323871-52323928)
chr3 (54-119)||(52412887-52412952)
chr3 (81-113)||(13371145-13371177)
chr3 (68-120)||(25925763-25925815)
chr3 (206-246)||(33081307-33081347)
chr3 (80-120)||(37825143-37825183)
[»] chr1 (11 HSPs)
chr1 (67-111)||(47877139-47877183)
chr1 (73-113)||(48748317-48748357)
chr1 (49-111)||(4549260-4549322)
chr1 (211-245)||(4768973-4769007)
chr1 (68-114)||(6292520-6292566)
chr1 (68-114)||(10199405-10199451)
chr1 (49-119)||(30257705-30257775)
chr1 (49-114)||(31517718-31517783)
chr1 (70-111)||(33723381-33723422)
chr1 (68-113)||(37593681-37593726)
chr1 (79-119)||(15361062-15361102)
[»] chr5 (16 HSPs)
chr5 (79-114)||(19460594-19460629)
chr5 (79-113)||(12521556-12521590)
chr5 (49-111)||(35963271-35963333)
chr5 (69-119)||(36638769-36638819)
chr5 (49-114)||(10125696-10125761)
chr5 (79-112)||(11615530-11615563)
chr5 (68-113)||(17258880-17258925)
chr5 (81-114)||(37526209-37526242)
chr5 (81-114)||(37588370-37588403)
chr5 (81-114)||(37690646-37690679)
chr5 (81-114)||(38104867-38104900)
chr5 (68-109)||(38728434-38728475)
chr5 (204-245)||(39257535-39257576)
chr5 (79-111)||(9106851-9106883)
chr5 (206-246)||(14257344-14257384)
chr5 (83-119)||(36774719-36774755)
[»] scaffold0089 (1 HSPs)
scaffold0089 (81-113)||(33637-33669)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 45738217 - 45737891
Alignment:
Q  1 tttattatttgagtttacttagtgtcgtaatcattttagatgttgtttgagaacttatagaaataatttatgacaagctcataagatgttttcagcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45738217 tttattatttgagtttacttagtgtcgtaatcattttagatattgtttgagaacttatagaaataatttacgacaagctcataagatgttttcagcttat 45738118  T
Q  101 ttccataagctctcaaggaaggatagcttatatggaaacagtttgactttagtgttatttcttgttgtaggaatgacttatacataagaatttattgata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45738117 ttccataagctctcaaggaaggatagcttatatggaaacagtttgactttagtgttatttcttgttgtaggaatgacttatacataagcatttattgata 45738018  T
Q  201 catgtttatgttataagcgctcaattaagttatttatccaaacaaaactttaatataacgacgttttagtataaccaatgttttcaatcacgataatggt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45738017 cacgtttatgttataagcgctcaattaagttatttatccaaacaaaactttaatataacgatgttttagtataaccaatgttttcaatcacgataatggt 45737918  T
Q  301 tgcaatcacgttgtggaacatgatatt 327  Q
    |||||||||||||||||||||||||||    
T  45737917 tgcaatcacgttgtggaacatgatatt 45737891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 302
Target Start/End: Complemental strand, 45732763 - 45732527
Alignment:
Q  51 gaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaaggaaggatagcttatatggaaacagtttgacttt 150  Q
    |||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||     |||||| ||||||||||||| |||| |||||    
T  45732763 gaacttatagaaataatttacgacatgttcatatgatgttttcagcttatttccataagctctc----gaggatatcttatatggaaactgttt-acttt 45732669  T
Q  151 agtgttatttcttgttgtaggaatgacttatacataagaatttattgatacatgtttatgttataagcgctcaattaagttatttatccaaacaaaactt 250  Q
      || |||||||||||| || ||||||||| ||||||  | ||||||||||||||||               | ||||||||||||||||||||||||||    
T  45732668 tatgctatttcttgttgcagaaatgacttacacataaacacttattgatacatgttt---------------agttaagttatttatccaaacaaaactt 45732584  T
Q  251 taat-----ataacgacgttttagtataaccaatgttttcaatcacgataatggttg 302  Q
    ||||     ||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  45732583 taatataacataacaacgttattgtataaccaatgttttcaatcacgatagtggttg 45732527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45738284 - 45738236
Alignment:
Q  1 tttattatttgagtttacttagtgtcgtaatcattttagatgttgtttg 49  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||    
T  45738284 tttattatttgagtttacttagtgacgtaatcattttagatattgtttg 45738236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 24193549 - 24193465
Alignment:
Q  162 ttgttgtaggaatgacttatacataagaatttat-tgatacatgtttatgttataagcgctcaattaagttatttatccaaacaa 245  Q
    ||||||||  ||| ||||||||||||| | |||| |||||   ||||||| |||||| ||||||||||||| |||||||||||||    
T  24193549 ttgttgtaaaaataacttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaacaa 24193465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 5131259 - 5131298
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  5131259 cataagttgttttcagcttatttccataagctctccagga 5131298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 7693999 - 7694058
Alignment:
Q  60 gaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||| || |||||| | ||||||| |||||||||||||||||||||| ||||| ||||    
T  7693999 gaaatagttaatgacatgttcataagttgttttcagcttatttccataaactctccagga 7694058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 19429770 - 19429731
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  19429770 cataagctgttttcagcttatttccataagctctccagga 19429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 1137785 - 1137739
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||| | ||||||| ||||||||| ||||||||||||||||||    
T  1137785 ttatgacatgttcataagttgttttcagtttatttccataagctctc 1137739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 8469371 - 8469413
Alignment:
Q  65 aatttatgacaagctcataagatgttttcagcttatttccata 107  Q
    ||||||||||| | ||||||| |||||||||||||||||||||    
T  8469371 aatttatgacatgttcataagttgttttcagcttatttccata 8469413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 24444040 - 24443919
Alignment:
Q  123 atagcttatatggaaacagtttgactttagtgttatttcttgttgtaggaatgacttatacataagaatttat-tgatacatgtttatgttataagcgct 221  Q
    |||||||||||| |||  |||||| |||| | |||| | ||||||||| |||  |||||||||||||| |||| |||||  || ||||| ||||||||||    
T  24444040 atagcttatatgaaaattgtttgaatttatt-ttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgct 24443942  T
Q  222 caattaagttatttatccaaaca 244  Q
     ||| ||||| | ||||||||||    
T  24443941 taataaagttgtgtatccaaaca 24443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 46110266 - 46110228
Alignment:
Q  78 ctcataagatgttttcagcttatttccataagctctcaa 116  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  46110266 ctcataagttgttttcagcttatttctataagctctcaa 46110228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 2592320 - 2592352
Alignment:
Q  82 taagatgttttcagcttatttccataagctctc 114  Q
    |||| ||||||||||||||||||||||||||||    
T  2592320 taagttgttttcagcttatttccataagctctc 2592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 14011293 - 14011261
Alignment:
Q  82 taagatgttttcagcttatttccataagctctc 114  Q
    |||| ||||||||||||||||||||||||||||    
T  14011293 taagctgttttcagcttatttccataagctctc 14011261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 33534178 - 33534214
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctcaa 116  Q
    |||||| |||||||||||||||| |||||||||||||    
T  33534178 cataagttgttttcagcttattttcataagctctcaa 33534214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 35406009 - 35405969
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| ||||||||||||| |||||||||||||| ||||    
T  35406009 tcataagctgttttcagcttacttccataagctctccagga 35405969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 37575914 - 37575978
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    ||||||||||  |||||| |||| |||  |||||||| ||||||||||| |||||||||| ||||    
T  37575914 gagaacttatgaaaataacttataacatactcataagttgttttcagctcatttccataaactct 37575978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 43824345 - 43824313
Alignment:
Q  79 tcataagatgttttcagcttatttccataagct 111  Q
    ||||||| |||||||||||||||||||||||||    
T  43824345 tcataagttgttttcagcttatttccataagct 43824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 4420730 - 4420670
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||| || |||||||| | ||||||| ||||||||||||||||||||||||||||    
T  4420730 cttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctc 4420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 6537020 - 6536975
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||    
T  6537020 ttatgacatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 9027665 - 9027606
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    ||||| ||||||| |||||||| |  |||||| |||||||||||||||| ||||||||||    
T  9027665 cttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 6647460 - 6647414
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||| | |||||||||||||||| ||||||| |||||||||||    
T  6647460 ttatgacatgttcataagatgttttcaacttattttcataagctctc 6647414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 27909647 - 27909681
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctc 114  Q
    |||||| ||||||||||||||||||||||||||||    
T  27909647 cataagttgttttcagcttatttccataagctctc 27909681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 7785754 - 7785787
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  7785754 ataagttgttttcagcttatttccataagctctc 7785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 14340951 - 14340992
Alignment:
Q  203 tgtttatgttataagcgctcaattaagttatttatccaaaca 244  Q
    |||||||||||||||| || ||||||||| ||||||||||||    
T  14340951 tgtttatgttataagcacttaattaagttgtttatccaaaca 14340992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 34403928 - 34403883
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    |||||||| | ||||||| |||||||| ||||||||||||||||||    
T  34403928 ttatgacatgttcataaggtgttttcaccttatttccataagctct 34403883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 7931928 - 7931976
Alignment:
Q  196 tgatacatgtttatgttataagcgctcaattaagttatttatccaaaca 244  Q
    |||||||||||||||||||||| |||   ||||||| ||||||||||||    
T  7931928 tgatacatgtttatgttataagagcttgtttaagttgtttatccaaaca 7931976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 20512654 - 20512686
Alignment:
Q  81 ataagatgttttcagcttatttccataagctct 113  Q
    ||||| |||||||||||||||||||||||||||    
T  20512654 ataagttgttttcagcttatttccataagctct 20512686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 32171521 - 32171489
Alignment:
Q  87 tgttttcagcttatttccataagctctcaagga 119  Q
    |||||||||||||||||||||||||||| ||||    
T  32171521 tgttttcagcttatttccataagctctccagga 32171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 7244761 - 7244707
Alignment:
Q  60 gaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  7244761 gaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctc 7244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 12234872 - 12234938
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaaggaa 120  Q
    |||||||||| || |||||||| |   ||||| |||||||||||||||||||||||||||| |||||    
T  12234872 cttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctaggaa 12234938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 9423578 - 9423642
Alignment:
Q  55 ttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||| |||| ||||||||||| | ||||||| ||||||||||||||||| | |||||||| ||||    
T  9423578 ttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccagga 9423642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 22388052 - 22388092
Alignment:
Q  203 tgtttatgttataagcgctcaattaagttatttatccaaac 243  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  22388052 tgtttatgttataagcgcttaattaagttgtttatccaaac 22388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 44151476 - 44151520
Alignment:
Q  67 tttatgacaagctcataagatgttttcagcttatttccataagct 111  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||    
T  44151476 tttatgacatgtccataagatgttttcagcttatttccataagct 44151520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 45078370 - 45078314
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttcca 105  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||| ||||||||||    
T  45078370 gagaacttatagaaataacttatgacatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 34754807 - 34754854
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctca 115  Q
    |||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  34754807 ttatgacaagcctataagttgttttcagcttatttccatcagctctca 34754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 26935565 - 26935599
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctct 113  Q
    ||||||| |||||||||||||||||||||||||||    
T  26935565 tcataagctgttttcagcttatttccataagctct 26935599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 2380263 - 2380226
Alignment:
Q  205 tttatgttataagcgctcaattaagttatttatccaaa 242  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  2380263 tttatgttataagcgcttaattaagttgtttatccaaa 2380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 48157098 - 48157163
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||| |||||||||| || ||||| || |  |||||| ||||||||||||||||||||||| ||||    
T  48157098 gagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctc 48157163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 12835086 - 12835126
Alignment:
Q  204 gtttatgttataagcgctcaattaagttatttatccaaaca 244  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  12835086 gtttatgttataagcgcttaatcaagttgtttatccaaaca 12835126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 1647309 - 1647263
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1647309 ttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 24098197 - 24098129
Alignment:
Q  46 tttgagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||| |||| ||||| |||| || ||| || |||||  ||||||||||||||||||||||||||||    
T  24098197 tttgagagcttacagaaacaattaataacatgcccataaactgttttcagcttatttccataagctctc 24098129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 31739955 - 31740015
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||| || | |||||| | ||||||| ||||||||| ||||||||||||||||||    
T  31739955 cttatagaaacaactcatgacatgatcataagctgttttcagattatttccataagctctc 31740015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 34652019 - 34652079
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||| || |||||||| |  |||||| |||||||| |||||||||||||||||||    
T  34652019 cttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 34652079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 7871705 - 7871671
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctct 113  Q
    ||||||| |||||||||||||||||||||||||||    
T  7871705 tcataaggtgttttcagcttatttccataagctct 7871671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 27237872 - 27237936
Alignment:
Q  50 agaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||||||| |  |||||||| |  |||||| |||||| ||||||||||||||| |||||    
T  27237872 agaacttatagaaacagcttatgacatgtacataagctgtttttagcttatttccataaactctc 27237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 41817222 - 41817190
Alignment:
Q  87 tgttttcagcttatttccataagctctcaagga 119  Q
    |||||||||||||||||||||||||||| ||||    
T  41817222 tgttttcagcttatttccataagctctccagga 41817190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 12851238 - 12851197
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaaggaa 120  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  12851238 tcataagatgttttcggcttattttcataagctctcaaggaa 12851197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 4055600 - 4055659
Alignment:
Q  55 ttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||||| |||||||| |  |||||  |||||||||||||||||| |||||||||    
T  4055600 ttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctc 4055659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 20672823 - 20672772
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||| ||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccagga 20672772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 30918175 - 30918140
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30918175 tcataagttgttttcagcttatttccataagctctc 30918140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 31705146 - 31705107
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  31705146 cataagctgttttcagcttatttccataaactctcaagga 31705107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 41606900 - 41606951
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||||| | ||| ||| |||||||||||||||||||||||||||| ||||    
T  41606900 ttatgacatgttcaaaagttgttttcagcttatttccataagctctctagga 41606951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 8062390 - 8062356
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctc 114  Q
    ||||||||||||||||||||||||||||| |||||    
T  8062390 cataagatgttttcagcttatttccataatctctc 8062356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 25869255 - 25869309
Alignment:
Q  60 gaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||| |||||||| |  |||||| |||||||||||||||||||||| |||||    
T  25869255 gaaataacttatgacatgtccataagttgttttcagcttatttccataaactctc 25869309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 35869839 - 35869718
Alignment:
Q  123 atagcttatatggaaacagtttgactttagtgttatttcttgttgtaggaatgacttatacataagaatttat-tgatacatgtttatgttataagcgct 221  Q
    |||||||||||| |||  |||||| |||| | |||| | ||||||||| |||  |||||||||||||| |||| |||||  || ||||| ||||||||||    
T  35869839 atagcttatatgaaaattgtttgaatttatt-ttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgct 35869741  T
Q  222 caattaagttatttatccaaaca 244  Q
     ||| ||||| | ||||||||||    
T  35869740 taataaagttgtgtatccaaaca 35869718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 9380046 - 9380013
Alignment:
Q  212 tataagcgctcaattaagttatttatccaaacaa 245  Q
    |||||||||| |||||||||||||||||||||||    
T  9380046 tataagcgcttaattaagttatttatccaaacaa 9380013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 11183605 - 11183572
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  11183605 ataagctgttttcagcttatttccataagctctc 11183572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 12361284 - 12361219
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||| ||||||||||||  |||||||| |  |||||| |||||||| ||||||||||| |||||||    
T  12361284 gagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatttccattagctctc 12361219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 787701 - 787657
Alignment:
Q  204 gtttatgttataagcgctcaattaagttatttatccaaacaaaac 248  Q
    |||||||||||||| ||| ||| ||||| ||||||||||||||||    
T  787701 gtttatgttataagtgctgaataaagttgtttatccaaacaaaac 787657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 2458574 - 2458614
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| ||||||||| |||||||||||||||||| ||||    
T  2458574 tcataagctgttttcagtttatttccataagctctctagga 2458614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 6950382 - 6950350
Alignment:
Q  81 ataagatgttttcagcttatttccataagctct 113  Q
    ||||| |||||||||||||||||||||||||||    
T  6950382 ataagttgttttcagcttatttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 8060731 - 8060691
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| | |||||||||||||||||||||||||| ||||    
T  8060731 tcataagttattttcagcttatttccataagctctctagga 8060691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 8535766 - 8535818
Alignment:
Q  67 tttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||||| ||| ||||| | |||| ||||||||||||||||||||| ||||    
T  8535766 tttatgacatgcttataagctattttaagcttatttccataagctctctagga 8535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 34788495 - 34788523
Alignment:
Q  123 atagcttatatggaaacagtttgacttta 151  Q
    |||||||||||||||||||||||||||||    
T  34788495 atagcttatatggaaacagtttgacttta 34788523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 42215314 - 42215354
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  42215314 tcataagctgttttcagcttatttacataagctctccagga 42215354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 45432936 - 45432981
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 31010489 - 31010429
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||||| || |||||||| |  |||||| ||||||||||||| ||||||||||||||    
T  31010489 cttatagaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctc 31010429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 36887599 - 36887536
Alignment:
Q  46 tttgagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataag 109  Q
    |||||||||||||  ||| || || ||||| | |||||||||||||||||||||||| ||||||    
T  36887599 tttgagaacttatcaaaagaacttttgacatgttcataagatgttttcagcttattttcataag 36887536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 21862184 - 21862218
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctc 114  Q
    |||||| ||||||||||||||||||||||||||||    
T  21862184 cataagttgttttcagcttatttccataagctctc 21862218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 5292530 - 5292563
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  5292530 ataagttgttttcagcttatttccataagctctc 5292563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 42530156 - 42530111
Alignment:
Q  203 tgtttatgttataagcgctcaattaagttatttatccaaacaaaac 248  Q
    |||| |||||||||||||| ||||||||| |||||||| |||||||    
T  42530156 tgttcatgttataagcgcttaattaagttgtttatccatacaaaac 42530111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 43115110 - 43115081
Alignment:
Q  87 tgttttcagcttatttccataagctctcaa 116  Q
    ||||||||||||||||||||||||||||||    
T  43115110 tgttttcagcttatttccataagctctcaa 43115081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 52323871 - 52323928
Alignment:
Q  48 tgagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttcca 105  Q
    ||||| ||||| |||||||||||||||| |  |||||| |||||||| ||||||||||    
T  52323871 tgagagcttattgaaataatttatgacacgtccataagctgttttcaacttatttcca 52323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 52412887 - 52412952
Alignment:
Q  54 cttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||||||| ||  ||||||| | | ||||| ||||||||||||||||||||| |||||| ||||    
T  52412887 cttatagaaacaacctatgacatgtttataagctgttttcagcttatttccatatgctctctagga 52412952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 13371177 - 13371145
Alignment:
Q  81 ataagatgttttcagcttatttccataagctct 113  Q
    ||||| |||||||||||||||||||||||||||    
T  13371177 ataagttgttttcagcttatttccataagctct 13371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 25925815 - 25925763
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctcaaggaa 120  Q
    |||||||| | ||||||| |||||||| ||||||| ||||||||||| |||||    
T  25925815 ttatgacatgttcataagctgttttcaacttattttcataagctctccaggaa 25925763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 33081307 - 33081347
Alignment:
Q  206 ttatgttataagcgctcaattaagttatttatccaaacaaa 246  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  33081307 ttatgctataagcgctgaattaagctatttatccaaacaaa 33081347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 37825183 - 37825143
Alignment:
Q  80 cataagatgttttcagcttatttccataagctctcaaggaa 120  Q
    |||||| ||||||||| |||||||||||||||||| |||||    
T  37825183 cataagttgttttcaggttatttccataagctctccaggaa 37825143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 47877183 - 47877139
Alignment:
Q  67 tttatgacaagctcataagatgttttcagcttatttccataagct 111  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||    
T  47877183 tttatgacatgctcataagttgttttcagcttattttcataagct 47877139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 48748317 - 48748357
Alignment:
Q  73 acaagctcataagatgttttcagcttatttccataagctct 113  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  48748317 acaagttcataagttgttttcagcttatttccataagctct 48748357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 4549322 - 4549260
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagct 111  Q
    |||||||| | |||| ||||||||||| |   ||||| |||||||||||||||||||||||||    
T  4549322 gagaacttttggaaacaatttatgacatgtctataagttgttttcagcttatttccataagct 4549260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 4768973 - 4769007
Alignment:
Q  211 ttataagcgctcaattaagttatttatccaaacaa 245  Q
    ||||||||||| |||||||||||||||||||||||    
T  4768973 ttataagcgcttaattaagttatttatccaaacaa 4769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 6292566 - 6292520
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||    
T  6292566 ttatgacatgttcataagctgttttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 10199405 - 10199451
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||    
T  10199405 ttatgacatgttcataagttgttttcagcttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 30257775 - 30257705
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    |||| |||||| ||||  ||||||||| | ||||||| ||||||||||||||||| |||||| ||| ||||    
T  30257775 gagagcttataaaaatcttttatgacatgttcataagctgttttcagcttatttctataagccctccagga 30257705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 31517718 - 31517783
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||||||  ||| || | |||||| | ||||||| |||||||||||||||| |||||||||||    
T  31517718 gagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 33723381 - 33723422
Alignment:
Q  70 atgacaagctcataagatgttttcagcttatttccataagct 111  Q
    |||||| | |||| ||||||||||||||||||||||||||||    
T  33723381 atgacatgttcatgagatgttttcagcttatttccataagct 33723422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 37593681 - 37593726
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||    
T  37593681 ttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 15361102 - 15361062
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  15361102 tcataagttgttttcagcttattttcataagctctccagga 15361062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 19460629 - 19460594
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19460629 tcataagatgttttcagctcatttccataagctctc 19460594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 12521590 - 12521556
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctct 113  Q
    ||||||| |||||||||||||||||||||||||||    
T  12521590 tcataagctgttttcagcttatttccataagctct 12521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 35963333 - 35963271
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagct 111  Q
    |||||||||| ||||||   ||||||| |  |||||| |||||||||||||||||||||||||    
T  35963333 gagaacttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataagct 35963271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 36638819 - 36638769
Alignment:
Q  69 tatgacaagctcataagatgttttcagcttatttccataagctctcaagga 119  Q
    ||||||| | ||||||| | |||||||||||||||||||||||||| ||||    
T  36638819 tatgacatgttcataagcttttttcagcttatttccataagctctctagga 36638769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 10125696 - 10125761
Alignment:
Q  49 gagaacttatagaaataatttatgacaagctcataagatgttttcagcttatttccataagctctc 114  Q
    ||||||||||  ||| || |||||||| | | ||||| |||||||||||||||| |||||||||||    
T  10125696 gagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataagctctc 10125761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 11615563 - 11615530
Alignment:
Q  79 tcataagatgttttcagcttatttccataagctc 112  Q
    ||||||| ||||||||||||||||||||||||||    
T  11615563 tcataagctgttttcagcttatttccataagctc 11615530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 17258880 - 17258925
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataagctct 113  Q
    |||||||| | ||||||| |||||||||||||||| ||||||||||    
T  17258880 ttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 37526209 - 37526242
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  37526209 ataagctgttttcagcttatttccataagctctc 37526242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 37588370 - 37588403
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  37588370 ataagctgttttcagcttatttccataagctctc 37588403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 37690646 - 37690679
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  37690646 ataagctgttttcagcttatttccataagctctc 37690679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 38104867 - 38104900
Alignment:
Q  81 ataagatgttttcagcttatttccataagctctc 114  Q
    ||||| ||||||||||||||||||||||||||||    
T  38104867 ataagttgttttcagcttatttccataagctctc 38104900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 38728475 - 38728434
Alignment:
Q  68 ttatgacaagctcataagatgttttcagcttatttccataag 109  Q
    |||||||| |||| |||| |||||||||||||||||||||||    
T  38728475 ttatgacatgctcctaagctgttttcagcttatttccataag 38728434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 39257535 - 39257576
Alignment:
Q  204 gtttatgttataagcgctcaattaagttatttatccaaacaa 245  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  39257535 gtttatgctataagcgcttaattaagttgtttatccaaacaa 39257576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 9106883 - 9106851
Alignment:
Q  79 tcataagatgttttcagcttatttccataagct 111  Q
    ||||||| |||||||||||||||||||||||||    
T  9106883 tcataagctgttttcagcttatttccataagct 9106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 14257384 - 14257344
Alignment:
Q  206 ttatgttataagcgctcaattaagttatttatccaaacaaa 246  Q
    |||||||||||| ||| ||||||||| ||||||||||||||    
T  14257384 ttatgttataagtgcttaattaagttgtttatccaaacaaa 14257344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 36774719 - 36774755
Alignment:
Q  83 aagatgttttcagcttatttccataagctctcaagga 119  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  36774719 aagatggtttcagcttatttccataagctctccagga 36774755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 33637 - 33669
Alignment:
Q  81 ataagatgttttcagcttatttccataagctct 113  Q
    ||||| |||||||||||||||||||||||||||    
T  33637 ataagttgttttcagcttatttccataagctct 33669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University