View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_22 (Length: 314)

Name: NF14629_low_22
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_22
NF14629_low_22
[»] chr1 (1 HSPs)
chr1 (1-291)||(51211438-51211728)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 51211728 - 51211438
Alignment:
Q  1 aatgaaatatataaatgaaacttccaatagcaaagatttcagtctgaggtttaacagcaaataccctttttatggtaccaaaaactcatgaaagaaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211728 aatgaaatatataaatgaaacttccaatagcaaagatttcagtctgaggtttaacagcaaataccctttttatggtaccaaaaactcatgaaagaaagag 51211629  T
Q  101 cggattgatatacgtttttgcttagcaataaaaatagcactgcctaaccagtaccaaacgtggccataagtcctcaagtaaatttaaaatagggatatca 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  51211628 cggattgatatacgtttttgcttagcaataataatagcactgcctaaccagtaccaaacgtggacacaagtcctcaagtaaatttaaaatagggatatca 51211529  T
Q  201 acaatgcataatgctagtaatcaagggtgtgtcgaaaagagtgtgttcttagcactcctctttaagcaaataaaatcaaagtttaatttaa 291  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211528 gcaatgcataatgctagtaatcaagggtgtgtcgaaaagagtgtgttcttagcactcctctttaagcaaataaaatcaaagtttaatttaa 51211438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University