View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_25 (Length: 300)

Name: NF14629_low_25
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_25
NF14629_low_25
[»] chr7 (1 HSPs)
chr7 (164-280)||(26761470-26761586)
[»] chr8 (1 HSPs)
chr8 (157-273)||(34053192-34053308)
[»] chr5 (1 HSPs)
chr5 (157-273)||(43070071-43070187)
[»] chr4 (5 HSPs)
chr4 (156-273)||(11882887-11883004)
chr4 (2-111)||(47116459-47116568)
chr4 (164-271)||(33018530-33018637)
chr4 (167-280)||(33432813-33432926)
chr4 (163-273)||(35347163-35347273)
[»] chr3 (3 HSPs)
chr3 (159-274)||(12008998-12009113)
chr3 (156-273)||(47669131-47669248)
chr3 (168-277)||(51985890-51985999)
[»] chr1 (2 HSPs)
chr1 (159-274)||(47124691-47124806)
chr1 (163-274)||(7298553-7298664)
[»] chr6 (1 HSPs)
chr6 (156-274)||(6535166-6535284)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 26761470 - 26761586
Alignment:
Q  164 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26761470 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatgagctttc 26761569  T
Q  264 acctttctctatatccc 280  Q
    |||||||||||||||||    
T  26761570 acctttctctatatccc 26761586  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 34053192 - 34053308
Alignment:
Q  157 accttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatg 256  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34053192 accttctgacatttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatg 34053291  T
Q  257 agctttcacctttctct 273  Q
    |||||| ||||||||||    
T  34053292 agcttttacctttctct 34053308  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 43070187 - 43070071
Alignment:
Q  157 accttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatg 256  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43070187 accttcggacctttcctaaccgttagattggttaaacacatcatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatg 43070088  T
Q  257 agctttcacctttctct 273  Q
    |||||||||||||||||    
T  43070087 agctttcacctttctct 43070071  T

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Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 11883004 - 11882887
Alignment:
Q  156 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 255  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11883004 gaccttcggacttttcctaaccgttagattggttgaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcat 11882905  T
Q  256 gagctttcacctttctct 273  Q
    ||||||||||||||||||    
T  11882904 gagctttcacctttctct 11882887  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 47116568 - 47116459
Alignment:
Q  2 aattaatgtaaacaaagatagacaatcactacaaaaacttggacaacaaataaaaataagttatgacatccttttataaaatcacgtaacttttgtacaa 101  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47116568 aattaaagtaaacaaagatagacaatcaccacaaaaacttggacaacaaataaaaataagttattacatccttttataaaatcacgtaacttttgtacaa 47116469  T
Q  102 ataattcaaa 111  Q
    ||||||||||    
T  47116468 ataattcaaa 47116459  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 33018637 - 33018530
Alignment:
Q  164 gacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttc 263  Q
    ||||||| | || ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33018637 gaccttttccaatcgttagattggttgaacacatcatagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcatgagctttc 33018538  T
Q  264 acctttct 271  Q
    ||||||||    
T  33018537 acctttct 33018530  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 33432813 - 33432926
Alignment:
Q  167 ctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttcacc 266  Q
    |||||||||  |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  33432813 ctttcctaatagttagattggttgaacacaccatagattaaatacactgaattatcttttcatttgtcttcttccctctcaactctcatgagctttcccc 33432912  T
Q  267 tttctctatatccc 280  Q
    ||||||||||||||    
T  33432913 tttctctatatccc 33432926  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 35347273 - 35347163
Alignment:
Q  163 tgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagcttt 262  Q
    |||| ||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  35347273 tgactttttctaaccgttaaattagttaaacacatcatagatcgaatacacttgattattttttcatttgtcttcttccctctcaactctcatgagcttt 35347174  T
Q  263 cacctttctct 273  Q
    |||||||||||    
T  35347173 cacctttctct 35347163  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 12008998 - 12009113
Alignment:
Q  159 cttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgag 258  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  12008998 cttctgacattttctaaccgttagattggttaaacacaccatagatcaaatacacttgattatattttcatttgtcttcttccctctcaactctcatgag 12009097  T
Q  259 ctttcacctttctcta 274  Q
    ||||||||||||||||    
T  12009098 ctttcacctttctcta 12009113  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 47669248 - 47669131
Alignment:
Q  156 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 255  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47669248 gaccttctcacatttcctaaccgttagattggttaaacacaccagagatcaaatacacttgattatcttttcatttgtcttcttccctctcaactctcat 47669149  T
Q  256 gagctttcacctttctct 273  Q
    ||||||||| ||||||||    
T  47669148 gagctttcatctttctct 47669131  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 51985890 - 51985999
Alignment:
Q  168 tttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagctttcacct 267  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  51985890 tttcctaaccgttagattggttaaacataccatagatcaaatacacttgattatcttttcatttgtcttctttcctctcaactctcatgagctttcacct 51985989  T
Q  268 ttctctatat 277  Q
    ||||||||||    
T  51985990 ttctctatat 51985999  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 47124691 - 47124806
Alignment:
Q  159 cttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgag 258  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  47124691 cttcagacctttcctaaccgttagattggttgaacacaccatagatcaaatacacctgattatcttttcatttgtcttcttccctctcaactctcatgag 47124790  T
Q  259 ctttcacctttctcta 274  Q
    |||| |||||||||||    
T  47124791 cttttacctttctcta 47124806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 7298664 - 7298553
Alignment:
Q  163 tgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcatgagcttt 262  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||    
T  7298664 tgacatttcctaaccgttagattggttaaacacaccatagatcaaatacacttaattatattttcctttgtcttcttccttctcaactctcatgagcttt 7298565  T
Q  263 cacctttctcta 274  Q
    ||||||||||||    
T  7298564 cacctttctcta 7298553  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 6535284 - 6535166
Alignment:
Q  156 gaccttctgacctttcctaaccgttagattggttaaacacaccatagatcaaatacacttgattatcttttcatttgtcttcttccctgtcaactctcat 255  Q
    ||||||| |||||||||||| |||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  6535284 gaccttcggacctttcctaatcgttagattgattgaacacaccacagatcaaatacatttgattatcttttcatttgtcttcttccctctcaactctcat 6535185  T
Q  256 gagctttcacctttctcta 274  Q
    |||||||||||||||||||    
T  6535184 gagctttcacctttctcta 6535166  T

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