View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_27 (Length: 292)
Name: NF14629_low_27
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 1036031 - 1035757
Alignment:
| Q |
1 |
gcagcacaatcagtaccattttccttatattttgcaataattttcatgtcttcgttgaaagctctagtgtttggtccacattttctatgattttcttcat |
100 |
Q |
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| T |
1036031 |
gcagcacaatcagtaccattttccttatattttgcaataattttcatgtcttcgttgaaagctctagtgtttggtccacattttctatgattttcttcat |
1035932 |
T |
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| Q |
101 |
acttttgaagtttagataacaaatatggagaaggtttgt-gtagaaatgatgagattgtgacctgcttatgcatgatgattcatcaaatcctgaaactaa |
199 |
Q |
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| T |
1035931 |
actttccaagtttagataacaaatatggagaaggtttgtggtagaa---atgagattgtgacctgcttatgcatgatgattcatcaaatcctgaaactaa |
1035835 |
T |
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| Q |
200 |
aagtccgtcaagaaatttctctttgtcattaccagtgatgtcgttagatagagttgaagttgaattttccaatgcaatatt |
280 |
Q |
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| T |
1035834 |
aagtccatcaagaaatttctctttgtcattaccagtgatgtcgttagata---ttgaagttgaattttccaatgcaatatt |
1035757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 6938806 - 6939087
Alignment:
| Q |
12 |
agtaccattttccttatattttgcaataattttcatgtcttcgttgaaagctctagtgtttggtccacattttctatgattttcttcatacttttgaagt |
111 |
Q |
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||||||||||| |||| |||||| ||| ||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||| ||| ||| |
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| T |
6938806 |
agtaccatttttcttagattttgtaatttttttcatgtcttcattgtaagctctagtgttaggtccacaccttctatgaagttcttcatattttcttagt |
6938905 |
T |
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| Q |
112 |
ttagataacaaatatggagaaggtttgtgtagaaatg-------------atgagattgtgacctgcttatgcatgatgattcatcaaatcctgaaacta |
198 |
Q |
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||||||| ||||||||||||||||||||| || ||| |||||||||| ||||||||| ||||||| |||||||||||| ||||||| |
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| T |
6938906 |
ttagatatcaaatatggagaaggtttgtgaggagatggtttgtgatagaaatgagattgtaacctgcttacacatgatgcttcatcaaatccagaaacta |
6939005 |
T |
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| Q |
199 |
aaagtccgtcaagaaatttctctttgtcattaccagtgatgtcgttagatagagttgaagttgaattttccaatgcaatatt |
280 |
Q |
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||||||||||||| ||||||||||| |||| | ||||||| || || | | ||||||||||| ||||| ||||| |||||| |
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| T |
6939006 |
aaagtccgtcaagcaatttctctttctcatcatcagtgatctcttttggtggagttgaagttaaatttgtcaatgaaatatt |
6939087 |
T |
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