View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_30 (Length: 267)
Name: NF14629_low_30
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 479740 - 479992
Alignment:
| Q |
1 |
ttctttgttattcttaacctcactaattgggttagtttccattctctagtaataataatataaacgcatatttacactcatgtacgtgagattgatttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
479740 |
ttctttgttattcttaacctcactaattgggttagtttccattctctagtaataataatataaacgcatatttacactcatgtacctgagattgatttgt |
479839 |
T |
|
| Q |
101 |
gttatcatggctctatatatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479840 |
gttatcatggctctatatatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtcc |
479939 |
T |
|
| Q |
201 |
aaccttgttccagcagtcacatttgtaatagcagcctttgtagggtaattact |
253 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479940 |
aaccttgttccagcagtcacatttgtaatagcagcctttgtagggtaattact |
479992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 117 - 253
Target Start/End: Original strand, 467492 - 467628
Alignment:
| Q |
117 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
216 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| ||||||||||||||||||| ||||| ||| |||| |||| |
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| T |
467492 |
atatattgcagcattacattgaatcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaatcttcttccggcag |
467591 |
T |
|
| Q |
217 |
tcacatttgtaatagcagcctttgtagggtaattact |
253 |
Q |
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| T |
467592 |
tcacatttgtaattgcagccttagtagggtaattact |
467628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 446508 - 446617
Alignment:
| Q |
139 |
atcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtcacatttgtaatagcagcctt |
238 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||| ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||||||||||||| |
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| T |
446508 |
atcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcctt |
446607 |
T |
|
| Q |
239 |
tgtagggtaa |
248 |
Q |
| |
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|| ||||||| |
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| T |
446608 |
tgcagggtaa |
446617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 474520 - 474637
Alignment:
| Q |
117 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
216 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||| |||||||||| ||| |||| ||||| ||||| |||||||||||||| |||| ||| |||| |||| |
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| T |
474520 |
atatgatgcagcgttacattgactcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcag |
474619 |
T |
|
| Q |
217 |
tcacatttgtaatagcag |
234 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
474620 |
tcacatttgttatagcag |
474637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 455212 - 455346
Alignment:
| Q |
117 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
216 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| |||||||||| ||| |||| | ||| ||||| ||||| ||||||| ||| ||| |||||||| |
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| T |
455212 |
atattttgcagcattactttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcag |
455311 |
T |
|
| Q |
217 |
tcacatttgtaatagcagcctttgtagggtaatta |
251 |
Q |
| |
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|||||||||| |||||| ||||||| ||||||||| |
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| T |
455312 |
tcacatttgttatagcaacctttgttgggtaatta |
455346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 27491872 - 27491739
Alignment:
| Q |
120 |
tgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtca |
219 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| | | | |||| ||| ||||| ||| |||||||| ||||||| |||| ||| || ||||||||||| | |
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| T |
27491872 |
tgttgcagcattaccttggatcaaaatttactatcttggggtttatatctagtctcttcttcagttacaagtgcaatgtgcaatctagttccagcagtga |
27491773 |
T |
|
| Q |
220 |
catttgtaatagcagcctttgtagggtaattact |
253 |
Q |
| |
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|||||||||||||||| || ||||||||| |||| |
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|
| T |
27491772 |
catttgtaatagcagctttcgtagggtaactact |
27491739 |
T |
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