View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_33 (Length: 243)
Name: NF14629_low_33
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 12114927 - 12114720
Alignment:
| Q |
18 |
tataatggcagatgatgatgatatagttagcgtgaaacataaagagctattcaggatggtggagagaggtgatcctattgaagatatcaaaatagatcag |
117 |
Q |
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| T |
12114927 |
tataatggcagatgatgatgatatagttagcgtgaaacataaagagctattcaggatggtggagagaggtgatcttattgaagatatcaaaatagatcag |
12114828 |
T |
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| Q |
118 |
aatgtatatgatgatataacctctacttcagctaggacgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaag |
217 |
Q |
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| T |
12114827 |
aatgtatatgatgatataacctctacttcagctaggacgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaag |
12114728 |
T |
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| Q |
218 |
ggagagat |
225 |
Q |
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|||||||| |
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| T |
12114727 |
ggagagat |
12114720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 12094176 - 12093976
Alignment:
| Q |
21 |
aatggcagatgatgatgatatagttagcgtgaaacataaagagctattcaggatggtggagagaggtgatcctattgaagatatcaaaatagatcagaat |
120 |
Q |
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| T |
12094176 |
aatggcagatgatgatgatatagttagtgtgaaacataaagagctattcagaatggtggggagaggtgatcctatagaaaatatcaaaatagatcaggat |
12094077 |
T |
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| Q |
121 |
gtatatgatgatataacctctacttcagctaggacgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaaggga |
220 |
Q |
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| T |
12094076 |
gtatatgatgatataacctctatttcagctaggacgctacttcacgttgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaaggga |
12093977 |
T |
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| Q |
221 |
g |
221 |
Q |
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| T |
12093976 |
g |
12093976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 12051456 - 12051621
Alignment:
| Q |
55 |
cataaagagctattcaggatggtggagagaggtgatcctattgaagatatcaaaatagatcagaatgtatatgatgatataacctctacttcagctagga |
154 |
Q |
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|||||| ||||||| ||||||||| ||| ||||||| |||||||||||||||| |||||| || ||||| |||| |||||||||| |||| | ||| |
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| T |
12051456 |
cataaaaagctattgaggatggtgaagataggtgattctattgaagatatcaatatagatgagggtgtatttgatcatataacctcagaatcaggttgga |
12051555 |
T |
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| Q |
155 |
cgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaaggga |
220 |
Q |
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| T |
12051556 |
cgctgcttcacattgcagtaattgttggaaacgtgaaaaatatggaaaaattggtgagagatggga |
12051621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 11986985 - 11987053
Alignment:
| Q |
153 |
gacgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaagggag |
221 |
Q |
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| T |
11986985 |
gacgctacttcacgttgcagtaattgctggaaatgtgaaaaatgtggaaatgttagtgaaaaaagggag |
11987053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 11929097 - 11929022
Alignment:
| Q |
145 |
tcagctaggacgctacttcacattgcagtaaatgctggaaatctgaaaaatgtggaaatgttggtgagagaaggga |
220 |
Q |
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|||| ||||||||| |||||| ||||||||| |||||||||| || |||||||||||| |||||||| || ||||| |
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| T |
11929097 |
tcaggtaggacgcttcttcacgttgcagtaattgctggaaatttggaaaatgtggaaaagttggtgaaagtaggga |
11929022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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