View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_37 (Length: 237)

Name: NF14629_low_37
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_37
NF14629_low_37
[»] chr5 (3 HSPs)
chr5 (1-221)||(9829693-9829913)
chr5 (38-122)||(4914933-4915017)
chr5 (129-165)||(13675919-13675955)
[»] chr4 (3 HSPs)
chr4 (45-127)||(30534588-30534670)
chr4 (55-165)||(50100552-50100663)
chr4 (124-165)||(24559638-24559679)
[»] chr3 (2 HSPs)
chr3 (10-161)||(11471792-11471944)
chr3 (49-127)||(29019281-29019359)
[»] chr6 (3 HSPs)
chr6 (45-113)||(9515522-9515590)
chr6 (42-122)||(344478-344558)
chr6 (45-164)||(35214182-35214301)
[»] chr7 (3 HSPs)
chr7 (1-164)||(33430972-33431130)
chr7 (42-86)||(36129505-36129549)
chr7 (45-164)||(44533666-44533788)
[»] chr1 (2 HSPs)
chr1 (49-107)||(33459120-33459178)
chr1 (55-127)||(49962406-49962478)
[»] chr8 (1 HSPs)
chr8 (55-107)||(34474720-34474772)
[»] chr2 (2 HSPs)
chr2 (124-164)||(10192336-10192376)
chr2 (130-162)||(25086606-25086638)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9829913 - 9829693
Alignment:
Q  1 tatatttcaatatgagcttttggtgctcaaacatatcatcatttactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacag 100  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  9829913 tatatttcaatatgaacttttggtgctcaaacatatgatcattcactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaatgg 9829814  T
Q  101 accaaaatgataagaatgatgtgaaaaggataaaagatgaaattgttatttgaaattaagttaaacgatgatgacaatgtaatttttctaataaaaaatc 200  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |||||| | || ||| ||||||||||||||||||||||||    
T  9829813 accaaaatgataaaaatgatgtgaaaagaataaaagataaaattgttatttgaaattaatttaaacaacgacgacgatgtaatttttctaataaaaaatc 9829714  T
Q  201 agcaaacttgtggatgatagc 221  Q
    |||||||||||||||||||||    
T  9829713 agcaaacttgtggatgatagc 9829693  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 4914933 - 4915017
Alignment:
Q  38 atcatttactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgt 122  Q
    |||||| | ||||||| |||||| |||||||||||||||| ||||||||| |  |||||||| |||||||||| || ||||||||    
T  4914933 atcattcattcatgttttcatatgaattttagatttgatgtttgaaaatttatatgcaaacaaaccaaaatgacaaaaatgatgt 4915017  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 13675919 - 13675955
Alignment:
Q  129 gataaaagatgaaattgttatttgaaattaagttaaa 165  Q
    |||||||||| |||||||||| |||||||||||||||    
T  13675919 gataaaagatcaaattgttatctgaaattaagttaaa 13675955  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 30534670 - 30534588
Alignment:
Q  45 actcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtgaaaa 127  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||  || ||||||||||| | || || ||||| |||||||    
T  30534670 actcatgttttcatataaattttagatttgatgcttgaaaattcatatgaaaacagaccaataggacaaaaatgacgtgaaaa 30534588  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 50100663 - 50100552
Alignment:
Q  55 tcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtg-aaaaggataaaagatgaaattgttatttga 153  Q
    |||||| |||||||||||||||  | |||||||||| | |||||| | |||||  | || ||||| ||| |||| |||||||||  ||||||||||||||    
T  50100663 tcatatgaattttagatttgatactagaaaattcacatacaaacatatcaaaagaacaaaaatgacgtggaaaaagataaaagacaaaattgttatttga 50100564  T
Q  154 aattaagttaaa 165  Q
    ||||||||||||    
T  50100563 aattaagttaaa 50100552  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 24559638 - 24559679
Alignment:
Q  124 aaaaggataaaagatgaaattgttatttgaaattaagttaaa 165  Q
    |||| |||||| |||||||||||||| |||||||||||||||    
T  24559638 aaaaagataaatgatgaaattgttatctgaaattaagttaaa 24559679  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 11471944 - 11471792
Alignment:
Q  10 atatgagcttttggtgctcaaacatatcatcatttactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatg 109  Q
    |||||||||||| ||| |||||  ||| ||| || |||||| || |||||| |||||||||||||||| |||||||| ||  |||||| |||||||||      
T  11471944 atatgagcttttagtgttcaaatctatgatccttcactcatttt-tcatatgaattttagatttgatgcttgaaaatgcatatgcaaaaagaccaaaaga 11471846  T
Q  110 ataagaatgatgtg--aaaaggataaaagatgaaattgttatttgaaattaagt 161  Q
      || |||||||||  |||| |||||| |||||||| ||||| |||||||||||    
T  11471845 ggaaaaatgatgtgaaaaaaagataaatgatgaaatcgttatctgaaattaagt 11471792  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 29019281 - 29019359
Alignment:
Q  49 atgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtgaaaa 127  Q
    ||||| |||||| ||||||| |||||||| |||||||||||  ||||||| ||||||| |||||| |||||| ||||||    
T  29019281 atgttttcatattaattttaaatttgatgcttgaaaattcatatgcaaacggaccaaattgataaaaatgatatgaaaa 29019359  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 9515522 - 9515590
Alignment:
Q  45 actcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataa 113  Q
    ||||||||| |||||| |||||||||||||||| |||||||||| ||||||||| || |||||| ||||    
T  9515522 actcatgttttcatatgaattttagatttgatgcttgaaaattctcttgcaaacggatcaaaataataa 9515590  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 344478 - 344558
Alignment:
Q  42 tttactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgt 122  Q
    |||||||||||| |||||||  |||||||||||||| |||||||| ||  |||||||||| ||||| ||||| ||| ||||    
T  344478 tttactcatgttttcatatatgttttagatttgatggttgaaaatccatatgcaaacagatcaaaaagataaaaataatgt 344558  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 35214182 - 35214301
Alignment:
Q  45 actcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtgaaaaggataaaagatgaaatt 144  Q
    ||||||||| | ||||| |||||| |||||| | ||  |||||||  |||||||| | ||||| || || ||||| ||||||||||||||  | | |||     
T  35214182 actcatgtttttatatacattttaaatttgaagcttagaaattcatatgcaaacaaatcaaaaggacaaaaatgacgtgaaaaggataaagaacggaatc 35214281  T
Q  145 gttatttgaaattaagttaa 164  Q
     |||||||||||||||||||    
T  35214282 attatttgaaattaagttaa 35214301  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 33431130 - 33430972
Alignment:
Q  1 tatatttcaatatgagcttttggtgctcaaacatatcatcatttactcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacag 100  Q
    ||||||||||| |||||| || ||||||||| |||  ||||||   ||||||| |||||| ||||||| |||||||| ||||||| |||  || |||| |    
T  33431130 tatatttcaatttgagctctttgtgctcaaatatacgatcattcgttcatgttttcatatgaattttacatttgatgtttgaaaactca--tgtaaactg 33431033  T
Q  101 accaaaatgataagaatgatgtgaaaaggataaaagatgaaattgttatttgaaattaagttaa 164  Q
    || |||   | || ||||| || |||| ||||||  | ||||||||||| ||||||||||||||    
T  33431032 acaaaa---aaaaaaatgacgtaaaaaagataaagaacgaaattgttatatgaaattaagttaa 33430972  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 36129505 - 36129549
Alignment:
Q  42 tttactcatgttatcatataaattttagatttgatgattgaaaat 86  Q
    |||| ||||||| |||||||||||||||||||||||||| |||||    
T  36129505 tttattcatgttttcatataaattttagatttgatgattaaaaat 36129549  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 44533666 - 44533788
Alignment:
Q  45 actcatgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtgaaaag---gataaaagatgaa 141  Q
    ||||||||| |||||| ||||||| |||||||| |||||||| ||  ||||||| |||||||| || || ||| | |||||||    |||||| ||  ||    
T  44533666 actcatgttttcatatgaattttaaatttgatgcttgaaaatccatatgcaaacggaccaaaaggacaaaaataacgtgaaaaaaaagataaaggacaaa 44533765  T
Q  142 attgttatttgaaattaagttaa 164  Q
    || ||||| ||||||||||||||    
T  44533766 atggttatctgaaattaagttaa 44533788  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 33459178 - 33459120
Alignment:
Q  49 atgttatcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaa 107  Q
    ||||| ||||||||||||||||||||||| |||||||||||  | ||||| ||||||||    
T  33459178 atgttttcatataaattttagatttgatgtttgaaaattcatattcaaacggaccaaaa 33459120  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 49962478 - 49962406
Alignment:
Q  55 tcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaatgataagaatgatgtgaaaa 127  Q
    |||||| |||||||||||| ||| || |||||| |  | |||||  ||||||||||||| |||||||||||||    
T  49962478 tcatatgaattttagatttaatgtttcaaaatttatatacaaacgaaccaaaatgataaaaatgatgtgaaaa 49962406  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 34474772 - 34474720
Alignment:
Q  55 tcatataaattttagatttgatgattgaaaattcacttgcaaacagaccaaaa 107  Q
    ||||||||||||||||||| ||||||||||||  |  |||||||||| |||||    
T  34474772 tcatataaattttagatttaatgattgaaaatcgatatgcaaacagatcaaaa 34474720  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 10192336 - 10192376
Alignment:
Q  124 aaaaggataaaagatgaaattgttatttgaaattaagttaa 164  Q
    |||| |||||| ||| |||||||||||||||||||||||||    
T  10192336 aaaaagataaaggatcaaattgttatttgaaattaagttaa 10192376  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 25086638 - 25086606
Alignment:
Q  130 ataaaagatgaaattgttatttgaaattaagtt 162  Q
    ||||| |||||||||||||||||||||||||||    
T  25086638 ataaatgatgaaattgttatttgaaattaagtt 25086606  T

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