View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_4 (Length: 575)
Name: NF14629_low_4
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_4 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 4301716 - 4302272
Alignment:
| Q |
1 |
cataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaaatca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301716 |
cataaccaatgagcaaataaacatggatattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaaatca |
4301815 |
T |
|
| Q |
101 |
ccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301816 |
ccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgattgaa |
4301915 |
T |
|
| Q |
201 |
taaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgactttggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301916 |
taaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgactttggaa |
4302015 |
T |
|
| Q |
301 |
gagaatatttgaagtattggcaatccaagctccgattagagaacaaagagtcaatgagattgaggccaagaatgttgcagctgatgtgttgaattgaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302016 |
gagaatatttgaagtattggcaatccaagctccgattagagaacaaagagtcaatgagattgaggccaagaatgttgcagctgatgtgttgaattgaatg |
4302115 |
T |
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| Q |
401 |
acagatagagctgtgctaatatcccttttctcagcctgatcgttcgttattaagtttacaaagaagatgaaaaataaattagaagatgtttccaattaaa |
500 |
Q |
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| T |
4302116 |
acagatagagctgtgctaatatcccttttctcagcctgatcgttcgttattaagtttacaaagaagatgaaaaataaattagaagatgtttccaattaaa |
4302215 |
T |
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| Q |
501 |
ccacaggaaggataaggataattacttgcctgcataattctgtcaacccaggctctt |
557 |
Q |
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| T |
4302216 |
ccacacgaaggataaggataattacttgcctgcataattctgtcaacccaggctctt |
4302272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 33101169 - 33101567
Alignment:
| Q |
1 |
cataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
33101169 |
cataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaattaaagagcttgaagaccgagtgaccaaaaatca |
33101268 |
T |
|
| Q |
101 |
ccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
33101269 |
ccaccccttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaacaaagcgtcttgcatattgaa |
33101368 |
T |
|
| Q |
201 |
taaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgactttggaa |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
33101369 |
taaagcatgagaaagcaagaaggaaacaggttaataaacaaatgtacttgatggaaactgcggttgcactcgtgtcaccatagattaattgactctggaa |
33101468 |
T |
|
| Q |
301 |
gagaatatttgaagtattggcaatccaagctccgattagagaacaaagagtcaatgagattgaggccaagaatgttgcagctgatgtgttgaattgaat |
399 |
Q |
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| T |
33101469 |
gaaaatatttgaagtattagcaatccaagctccaattagagaacaaagagtcaaagagactgaggccaagaatgttgccgctgatgtgttgaattgaat |
33101567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 87157 - 87485
Alignment:
| Q |
1 |
cataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcaagttaagtgcaaaataaagagctcgaagaccgagtgaccaaaaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
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| T |
87157 |
cataaccaatgagcaaataaacatgggtattggaccaaaaaaccaaagcagcgagttaagtgcaaaataaataccttgaagatcgagtgaccaaaaatca |
87256 |
T |
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| Q |
101 |
ccaccccttatgactgctaattccacactactgataggaacaaaactatccggtgtgcttatcaaatagtttgcatgaacaaagtgtcttgctgattgaa |
200 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
87257 |
ccacctcttatgactgctaattccacactactaataggaacaaaactatctggtgtgcttatcaaatagtttgcatgaaaaaagtgtcttgcagattgaa |
87356 |
T |
|
| Q |
201 |
taaagcatgagaaagcaaggaggaaacaggttaataagcaaatgtacttgatggaaactgcggttgcacttgtgtcaccgtagattaattgactttggaa |
300 |
Q |
| |
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|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||| ||||| |
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| T |
87357 |
taaagcatgagaaaccaagaaggacacaggttaataagcaaatgtacttgatggaaactgcggttgccctcgtgtcaccatagatttattgactctggaa |
87456 |
T |
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| Q |
301 |
gagaatatttgaagtattggcaatccaag |
329 |
Q |
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|| ||||||||||||||| ||| |||||| |
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| T |
87457 |
gaaaatatttgaagtattagcagtccaag |
87485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 92309 - 92383
Alignment:
| Q |
325 |
ccaagctccgattagagaacaaagagtcaatgagattgaggccaagaatgttgcagctgatgtgttgaattgaat |
399 |
Q |
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||||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||| |
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| T |
92309 |
ccaagctccaattagagaacaaagagtcaaagagactgaggccaagaatgttgccgctgatgtgttgaatcgaat |
92383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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