View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_41 (Length: 234)
Name: NF14629_low_41
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_41 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 24693053 - 24693268
Alignment:
| Q |
19 |
tgaatgtttagaaaggaagaagaggtctttctgaattaatatattatataatttaaagaagaggtccagtgtacggcatgaaagtttatgaaccaacttg |
118 |
Q |
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| T |
24693053 |
tgaatgtttagaaaggaagaagaggtctttctgaattaatatattatataatttaaagaagaggtctagtgtacggcatgaaagtttatgaaccaacttg |
24693152 |
T |
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| Q |
119 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctcac |
218 |
Q |
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| T |
24693153 |
atgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagaggataatccacaaaagtgtctcac |
24693252 |
T |
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| Q |
219 |
atccaacaacaccaga |
234 |
Q |
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| T |
24693253 |
atccaacaacaccaga |
24693268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 24641739 - 24641899
Alignment:
| Q |
74 |
aagaagaggtccagtgtacggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatac |
173 |
Q |
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| T |
24641739 |
aagaagaggtctagtgtatggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatac |
24641838 |
T |
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| Q |
174 |
accaattcgagatctgagaaaggataatccacaaaagtgtctcacatccaacaacaccaga |
234 |
Q |
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| T |
24641839 |
accaattcgagatctgagaaaggattatccacaaaagtgtctcacatccaacaacaccaga |
24641899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 24733509 - 24733393
Alignment:
| Q |
118 |
gatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctca |
217 |
Q |
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| T |
24733509 |
gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataatccacaaaagtgtgtcg |
24733410 |
T |
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| Q |
218 |
catccaacaacaccaga |
234 |
Q |
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| T |
24733409 |
accccaacaacaccaga |
24733393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 24648551 - 24648645
Alignment:
| Q |
119 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgt |
213 |
Q |
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| T |
24648551 |
atgcagttagagtgacagaataaagtaaccactaaaacgaatgagttgatgatacaccaattcgagaactgagagatgataatccacaaaagtgt |
24648645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 24720686 - 24720814
Alignment:
| Q |
109 |
aaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcg---agatctgagaaaggataatccac |
205 |
Q |
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|||||| | ||||||||||||||| |||| |||||||| ||| ||| |||| |||| | |||| |||||||| |||||||||||||||| |||||| |
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| T |
24720686 |
aaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaattcctccagatctgagaaaggattatccac |
24720785 |
T |
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| Q |
206 |
aaaagtgtctcacatccaacaacaccaga |
234 |
Q |
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| T |
24720786 |
agaagcgtctcacatccaacaacaccaga |
24720814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 18157813 - 18157716
Alignment:
| Q |
119 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
216 |
Q |
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|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
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| T |
18157813 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
18157716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 15282201 - 15282104
Alignment:
| Q |
119 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
216 |
Q |
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|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
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| T |
15282201 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
15282104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 24223699 - 24223602
Alignment:
| Q |
119 |
atgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagatctgagaaaggataatccacaaaagtgtctc |
216 |
Q |
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|||||||||||||| ||| |||||||| ||||||| |||||| |||| |||||||||| ||||||| | || | ||| ||| ||||||| ||||| |
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| T |
24223699 |
atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgagatccgggagacgattatcaacaaaagcgtctc |
24223602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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