View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14629_low_47 (Length: 217)
Name: NF14629_low_47
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9830037 - 9830249
Alignment:
| Q |
1 |
tgtcttttgtattttttgttagatgttgggttcgtcgtaacttactttaattgtgtaatnnnnnnnnttacacaagtttgataatttagttgatctcnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
9830037 |
tgtcttttgtattttttgttagatgttgggttcgttgtaacttactttaattgtgtaataaaaaaaattacacatgtttgataatttagttgatctcttt |
9830136 |
T |
|
| Q |
101 |
nnnnattactaatttgttnnnnnnnnnnnnnttgaggcaagtggtttagtttttcttttgtaaaacttttaatatcagctttgtaatcataaaaattaat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9830137 |
ttttattactaatttgttaaaaaaacaaaaattgaggcaagtggattagtttttcttttgtaaaacttttaatatcagctttgtaatcataaaaattaat |
9830236 |
T |
|
| Q |
201 |
gctttaattattc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9830237 |
gctttaattattc |
9830249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University