View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_48 (Length: 215)
Name: NF14629_low_48
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 11824852 - 11824648
Alignment:
| Q |
1 |
caatgaagtattattcagtcctacttttcctcaacaatgcttggatgatcctattgtatagaaaaagagaaacaacat-------tagtagttacaactt |
93 |
Q |
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| T |
11824852 |
caatgaagtattattcagtcctacttttcctcaacaatgcttggatgatcctattgtatagaaaaagagaaacaacataaggttatagtagttacaactt |
11824753 |
T |
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| Q |
94 |
tttcgaacactacttattgaaaataaggagttaaatgacatcaaataactttaggaatctattgaaaattgatacacattctaatactttttaatatgaa |
193 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11824752 |
tttctaacactacttattgaaaataaggagttaaatgacatcaaataactttaggaatctattgaaaattgatacacattctaatactttttaatatgaa |
11824653 |
T |
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| Q |
194 |
tgaaa |
198 |
Q |
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||||| |
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| T |
11824652 |
tgaaa |
11824648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 10353502 - 10353308
Alignment:
| Q |
2 |
aatgaagtattattcagtcctacttttcctcaacaatgcttggatgatcctattgtatagaaaaagagaaacaacat-------tagtagttacaacttt |
94 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| | | |||||| |
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| T |
10353502 |
aatgaagtattattcattcccacttt-cctcaacaaagcttggatgatcctgttgtatagaaaaagagaaacaacataaagttatagtaataaaaacttt |
10353404 |
T |
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| Q |
95 |
ttcgaacactacttattgaaaataaggagttaaatgacatcaaataactttaggaatctattgaaaattgatacacattctaatactttttaatat |
190 |
Q |
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||| |||||||||||||||||||||||||||| ||||||| ||| ||||| | |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
10353403 |
ttctaacactacttattgaaaataaggagttacatgacataaaagaacttcaagaatctattgaaaattaatacacattctaatactgtttaatat |
10353308 |
T |
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