View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14629_low_49 (Length: 212)
Name: NF14629_low_49
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14629_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 47116796 - 47116734
Alignment:
| Q |
134 |
cagttataatgccatatttttgggttaattcctaacatattacaattatttgcttgtcatgat |
196 |
Q |
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| T |
47116796 |
cagtcataatgccatatttttgggttaattcctaacatattacaattatttgcttgtcatgat |
47116734 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 47116909 - 47116867
Alignment:
| Q |
19 |
atttcatgtcaataaattgtaagacaaagaaaccacacgttatta |
63 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
47116909 |
atttcatgtcaataaa--gtaagacaaagaaaccgcacgttatta |
47116867 |
T |
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