View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14629_low_7 (Length: 486)

Name: NF14629_low_7
Description: NF14629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14629_low_7
NF14629_low_7
[»] chr4 (38 HSPs)
chr4 (198-369)||(37728493-37728666)
chr4 (76-191)||(37729634-37729749)
chr4 (221-369)||(37727721-37727869)
chr4 (217-366)||(13509290-13509440)
chr4 (202-366)||(31600917-31601083)
chr4 (202-359)||(26421561-26421719)
chr4 (202-369)||(1290126-1290296)
chr4 (188-334)||(49306764-49306911)
chr4 (201-369)||(12129625-12129796)
chr4 (202-361)||(1835038-1835200)
chr4 (202-273)||(1963199-1963272)
chr4 (204-326)||(31599794-31599919)
chr4 (202-326)||(50909643-50909771)
chr4 (202-334)||(49307991-49308124)
chr4 (216-361)||(10448197-10448342)
chr4 (202-334)||(19750538-19750672)
chr4 (202-334)||(19789134-19789268)
chr4 (197-291)||(27257966-27258062)
chr4 (200-369)||(8155739-8155910)
chr4 (202-326)||(8757678-8757804)
chr4 (39-77)||(37729807-37729845)
chr4 (212-278)||(50909287-50909353)
chr4 (221-337)||(46638685-46638802)
chr4 (197-337)||(10470544-10470687)
chr4 (198-357)||(1289096-1289258)
chr4 (202-274)||(1964465-1964539)
chr4 (197-290)||(8758844-8758940)
chr4 (202-274)||(17382996-17383069)
chr4 (202-326)||(35934347-35934472)
chr4 (201-326)||(35935504-35935632)
chr4 (197-273)||(54110653-54110728)
chr4 (198-244)||(55603585-55603632)
chr4 (217-326)||(21178016-21178126)
chr4 (202-305)||(10447009-10447116)
chr4 (202-246)||(2193505-2193549)
chr4 (302-366)||(2412850-2412914)
chr4 (197-274)||(3927664-3927743)
chr4 (225-277)||(21539092-21539144)
[»] chr8 (40 HSPs)
chr8 (198-337)||(11282007-11282149)
chr8 (221-366)||(30335663-30335809)
chr8 (202-366)||(30336432-30336599)
chr8 (197-361)||(24359807-24359972)
chr8 (221-366)||(43661754-43661900)
chr8 (202-305)||(5514263-5514367)
chr8 (197-320)||(32207302-32207426)
chr8 (197-274)||(8388462-8388539)
chr8 (221-337)||(11283169-11283286)
chr8 (210-361)||(2379860-2380010)
chr8 (197-361)||(22221300-22221467)
chr8 (197-361)||(22227642-22227809)
chr8 (202-358)||(43661268-43661427)
chr8 (202-369)||(10006347-10006517)
chr8 (202-369)||(10007691-10007861)
chr8 (198-366)||(2378863-2379030)
chr8 (221-326)||(24123869-24123975)
chr8 (197-326)||(30570227-30570358)
chr8 (200-271)||(29968364-29968436)
chr8 (197-272)||(1823550-1823627)
chr8 (197-272)||(1857995-1858072)
chr8 (202-326)||(5513985-5514111)
chr8 (217-326)||(24122902-24123012)
chr8 (200-291)||(24361199-24361292)
chr8 (217-326)||(45114488-45114597)
chr8 (202-326)||(29043401-29043528)
chr8 (220-326)||(1824049-1824156)
chr8 (220-326)||(1858494-1858601)
chr8 (202-274)||(11287779-11287853)
chr8 (202-361)||(22220391-22220553)
chr8 (197-344)||(40471100-40471249)
chr8 (217-326)||(18978039-18978149)
chr8 (213-365)||(40469356-40469509)
chr8 (198-273)||(8389714-8389791)
chr8 (197-262)||(12353396-12353462)
chr8 (217-326)||(18970930-18971040)
chr8 (202-269)||(36249555-36249624)
chr8 (217-274)||(3208206-3208263)
chr8 (221-293)||(12351945-12352018)
chr8 (202-327)||(18979090-18979218)
[»] chr5 (30 HSPs)
chr5 (202-357)||(22940563-22940720)
chr5 (201-361)||(42195136-42195297)
chr5 (255-366)||(16650050-16650162)
chr5 (197-361)||(24332911-24333077)
chr5 (202-366)||(16650786-16650953)
chr5 (202-369)||(25523072-25523242)
chr5 (202-326)||(2186774-2186900)
chr5 (197-369)||(19752910-19753084)
chr5 (217-337)||(42196160-42196281)
chr5 (197-326)||(28539791-28539922)
chr5 (204-326)||(36486459-36486584)
chr5 (198-276)||(1016885-1016965)
chr5 (202-369)||(18486830-18487000)
chr5 (202-274)||(20214199-20214272)
chr5 (238-369)||(25524026-25524158)
chr5 (202-326)||(28538679-28538806)
chr5 (197-318)||(21835039-21835162)
chr5 (197-369)||(18485136-18485318)
chr5 (216-273)||(1015503-1015560)
chr5 (199-273)||(38834087-38834162)
chr5 (202-273)||(21834944-21835016)
chr5 (219-361)||(25056316-25056460)
chr5 (198-369)||(2686329-2686505)
chr5 (197-277)||(33158096-33158178)
chr5 (217-275)||(1796074-1796132)
chr5 (217-326)||(36485320-36485430)
chr5 (217-274)||(19754154-19754211)
chr5 (218-271)||(34893686-34893739)
chr5 (217-273)||(7311610-7311666)
chr5 (202-326)||(33160258-33160384)
[»] chr1 (38 HSPs)
chr1 (197-364)||(43378646-43378815)
chr1 (197-366)||(52274966-52275138)
chr1 (202-366)||(24422803-24422970)
chr1 (197-361)||(39153053-39153219)
chr1 (202-337)||(51684369-51684507)
chr1 (198-326)||(39151930-39152061)
chr1 (197-326)||(45157180-45157311)
chr1 (202-337)||(51685725-51685863)
chr1 (198-326)||(43058785-43058915)
chr1 (225-366)||(43377748-43377890)
chr1 (202-369)||(36613832-36614002)
chr1 (201-326)||(45156051-45156179)
chr1 (204-337)||(46066530-46066663)
chr1 (197-369)||(11436040-11436215)
chr1 (197-361)||(35594215-35594380)
chr1 (197-366)||(24426007-24426178)
chr1 (221-337)||(30249450-30249567)
chr1 (199-326)||(40384724-40384855)
chr1 (198-326)||(45149941-45150072)
chr1 (202-357)||(11437139-11437297)
chr1 (198-369)||(50680331-50680504)
chr1 (202-361)||(35595128-35595291)
chr1 (197-326)||(39698561-39698692)
chr1 (197-369)||(37526806-37526980)
chr1 (202-326)||(31194058-31194183)
chr1 (202-369)||(39222401-39222572)
chr1 (217-366)||(14999304-14999450)
chr1 (198-366)||(52276094-52276265)
chr1 (221-305)||(7675451-7675536)
chr1 (284-369)||(39221402-39221487)
chr1 (202-326)||(45148584-45148710)
chr1 (217-276)||(7674547-7674605)
chr1 (202-248)||(41364832-41364879)
chr1 (220-326)||(43059977-43060084)
chr1 (202-326)||(39699738-39699864)
chr1 (198-274)||(7983049-7983126)
chr1 (253-326)||(30248168-30248241)
chr1 (280-361)||(46525737-46525817)
[»] chr3 (40 HSPs)
chr3 (202-366)||(8456481-8456647)
chr3 (221-366)||(23769881-23770026)
chr3 (202-369)||(12700178-12700346)
chr3 (202-326)||(19984852-19984979)
chr3 (197-326)||(54986978-54987108)
chr3 (199-365)||(23770339-23770508)
chr3 (197-337)||(46721180-46721323)
chr3 (202-357)||(7758405-7758563)
chr3 (202-337)||(46719944-46720082)
chr3 (198-326)||(7267643-7267773)
chr3 (202-331)||(534502-534634)
chr3 (202-369)||(47614188-47614358)
chr3 (197-326)||(54540761-54540893)
chr3 (202-273)||(51037539-51037611)
chr3 (202-274)||(22776836-22776910)
chr3 (197-290)||(49398125-49398220)
chr3 (198-361)||(51347267-51347433)
chr3 (197-274)||(12703524-12703602)
chr3 (202-361)||(19986007-19986170)
chr3 (197-274)||(52104479-52104554)
chr3 (198-274)||(7268851-7268928)
chr3 (202-366)||(40426709-40426877)
chr3 (202-366)||(29931229-29931396)
chr3 (197-289)||(29932707-29932801)
chr3 (202-366)||(29980383-29980550)
chr3 (197-289)||(29981861-29981955)
chr3 (259-347)||(46492967-46493055)
chr3 (219-326)||(49216269-49216377)
chr3 (200-274)||(34940211-34940286)
chr3 (202-274)||(51038814-51038888)
chr3 (221-274)||(55192019-55192072)
chr3 (229-273)||(54654331-54654375)
chr3 (203-290)||(24516464-24516554)
chr3 (202-245)||(53901441-53901484)
chr3 (229-326)||(8875938-8876036)
chr3 (198-244)||(39844251-39844299)
chr3 (198-248)||(47610630-47610682)
chr3 (280-369)||(47615505-47615594)
chr3 (197-366)||(54539753-54539924)
chr3 (199-244)||(39843051-39843098)
[»] chr2 (30 HSPs)
chr2 (202-366)||(26545452-26545619)
chr2 (202-369)||(13030295-13030462)
chr2 (197-366)||(11257620-11257791)
chr2 (197-360)||(22587892-22588056)
chr2 (202-334)||(18300688-18300820)
chr2 (220-369)||(18869090-18869242)
chr2 (202-366)||(26544152-26544318)
chr2 (220-366)||(11258742-11258889)
chr2 (202-369)||(18905916-18906085)
chr2 (197-369)||(22848189-22848364)
chr2 (205-277)||(24476865-24476937)
chr2 (197-248)||(21837305-21837356)
chr2 (212-274)||(32739638-32739700)
chr2 (229-337)||(11996739-11996848)
chr2 (217-361)||(18797267-18797412)
chr2 (218-326)||(22587522-22587630)
chr2 (202-334)||(18299376-18299511)
chr2 (202-369)||(28617926-28618094)
chr2 (202-274)||(36449781-36449855)
chr2 (197-325)||(802563-802693)
chr2 (217-275)||(18868944-18869002)
chr2 (202-248)||(21837073-21837119)
chr2 (188-245)||(8535709-8535766)
chr2 (202-326)||(7899853-7899980)
chr2 (198-272)||(36450947-36451022)
chr2 (198-361)||(7898690-7898855)
chr2 (196-275)||(13567969-13568050)
chr2 (202-264)||(11938822-11938886)
chr2 (229-277)||(810802-810850)
chr2 (235-326)||(41878132-41878224)
[»] chr7 (17 HSPs)
chr7 (217-366)||(31659643-31659793)
chr7 (202-324)||(21505419-21505542)
chr7 (197-369)||(7500453-7500627)
chr7 (212-369)||(47369796-47369954)
chr7 (216-369)||(22629505-22629659)
chr7 (217-369)||(18372385-18372538)
chr7 (202-369)||(18371427-18371597)
chr7 (198-326)||(42886257-42886388)
chr7 (198-361)||(6618208-6618372)
chr7 (202-369)||(7501780-7501950)
chr7 (202-361)||(22630388-22630550)
chr7 (202-361)||(43899451-43899610)
chr7 (197-274)||(11662575-11662654)
chr7 (202-337)||(3227554-3227692)
chr7 (204-326)||(14999126-14999249)
chr7 (217-274)||(5111637-5111694)
chr7 (217-269)||(20163585-20163637)
[»] scaffold0019 (2 HSPs)
scaffold0019 (202-334)||(60093-60228)
scaffold0019 (202-334)||(61422-61557)
[»] chr6 (13 HSPs)
chr6 (202-325)||(16704469-16704595)
chr6 (199-326)||(1829574-1829704)
chr6 (202-360)||(27437831-27437992)
chr6 (202-334)||(6842246-6842381)
chr6 (202-369)||(7314883-7315052)
chr6 (220-326)||(26574642-26574748)
chr6 (197-318)||(3333005-3333129)
chr6 (202-274)||(30495722-30495794)
chr6 (200-326)||(5658757-5658886)
chr6 (217-326)||(10785884-10785994)
chr6 (202-369)||(7316222-7316392)
chr6 (197-274)||(1828737-1828816)
chr6 (197-274)||(29473075-29473154)
[»] scaffold0003 (1 HSPs)
scaffold0003 (202-360)||(49370-49531)
[»] scaffold0321 (1 HSPs)
scaffold0321 (202-278)||(18731-18809)
[»] scaffold0302 (2 HSPs)
scaffold0302 (202-274)||(17473-17547)
scaffold0302 (202-326)||(18747-18874)
[»] scaffold0586 (2 HSPs)
scaffold0586 (202-326)||(8998-9123)
scaffold0586 (198-305)||(6342-6452)
[»] scaffold1303 (1 HSPs)
scaffold1303 (202-334)||(1442-1577)
[»] scaffold0369 (1 HSPs)
scaffold0369 (197-273)||(13191-13267)
[»] scaffold2034 (2 HSPs)
scaffold2034 (202-361)||(236-397)
scaffold2034 (221-274)||(1002-1055)
[»] scaffold0320 (1 HSPs)
scaffold0320 (235-369)||(19526-19661)
[»] scaffold0186 (1 HSPs)
scaffold0186 (202-263)||(23084-23145)
[»] scaffold0049 (1 HSPs)
scaffold0049 (197-318)||(7394-7518)
[»] scaffold0059 (2 HSPs)
scaffold0059 (212-326)||(3690-3805)
scaffold0059 (202-277)||(4751-4827)
[»] scaffold0112 (1 HSPs)
scaffold0112 (202-274)||(37151-37224)
[»] scaffold0294 (1 HSPs)
scaffold0294 (202-334)||(5401-5536)
[»] scaffold0045 (1 HSPs)
scaffold0045 (221-273)||(49109-49161)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 198 - 369
Target Start/End: Complemental strand, 37728666 - 37728493
Alignment:
Q  198 aggttaaagtgcactttttcc-cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc-tttaagatttagcctctc 295  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||     
T  37728666 aggttaaagtgcattttttcctcctaacttttaaaaagttgcaattttggcctcctatgtacaaaaactacaattttgaccctttaagatttagcttctt 37728567  T
Q  296 tgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||  ||||||||||||    
T  37728566 tgcatctttgatccttttagtcaattttgaccaagtcaacgcatgtgtggcatgtcatgtccgtaaataattaa 37728493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 37729749 - 37729634
Alignment:
Q  76 atatatgaaaaatatgaatgattaatatgagtataatttgatagagtaagagtcccttttggtgaactatttattttattttatttcaaaataacgtttc 175  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37729749 atatatgaaaaatatgaatgactaatatgaatataaattgatagagtaagagtcccttttggtgaactatttattttattttatttcaaaataacgtttt 37729650  T
Q  176 ttaataaaaatcagta 191  Q
    | ||||||||||||||    
T  37729649 taaataaaaatcagta 37729634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 221 - 369
Target Start/End: Original strand, 37727721 - 37727869
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||||||||||||| |||||||||  | ||| |||||||| ||||||||| |||  ||||||||||| |||| || ||||||| || ||||||||||    
T  37727721 taacttttaaaaagttgtaattttggctct-tatatacaaaaactacaattttaaccccttaagatttagtctctttgtatctttggtcattttagtcaa 37727819  T
Q  320 ttttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || ||||||||||||| ||||||||  |||||||||||||||    
T  37727820 ttttgaccaaatcaacgcatgtgttgcatgccacatgtgtaaataattaa 37727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 366
Target Start/End: Complemental strand, 13509440 - 13509290
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||||||||| ||||||||||||||  | | |||  |||| ||||||||||| ||  |||||||||||| || |||| ||||| || |||| |    
T  13509440 cccctaacttttaaaaaattgcaattttggccccccaagtatgaaaactacaattttgatcccctaagatttagcccctttgcacctttgctccttttgg 13509341  T
Q  316 tcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
     |||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  13509340 ccaattttgaccaagtcaacgcatgtgtggcatgccacatgtgtaaataat 13509290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 31601083 - 31600917
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||| ||  ||| ||||||||| ||||||||||| || |||||||||||||  | |||    
T  31601083 taaagtgcactttttcccctctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgaccccttaagatttagcccatttgc 31600984  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    | |||||||| |||| ||||||||||||   ||||| || | |||||||||||| |||||||| ||||    
T  31600983 aactttgatcctttttgtcaattttgac-cggtcaatgcctatgtggcatgccacgtgtgtaattaat 31600917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 359
Target Start/End: Complemental strand, 26421719 - 26421561
Alignment:
Q  202 taaagtgcactttttccc-ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgca 299  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||| ||| ||| ||||||||| ||||||||||| || ||||||||||||| |  ||||    
T  26421719 taaagtgcacttttcccctctaactttcaaaaacttgcaattttgacctcctaagtacaaaaactacaattttgaccccttaagatttagcc-cattgca 26421621  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgt 359  Q
      ||||||| |||||||||||||| | | ||||||||| || ||||||||||| ||||||    
T  26421620 aatttgatcattttagtcaattttaaaatagtcaacgcctgcgtggcatgccacgtgtgt 26421561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 1290296 - 1290126
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||  |||||||||||||| |||| ||||||||| ||||||||| | ||  ||||||||| || || |||    
T  1290296 taaagtgcacttttccccccttaactttcaaaatcttgcaattttggccctctaagtacaaaaactacaattttagccccctaagatttaacccctttgc 1290197  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  ||||||||| |  |||||||||||  ||||||| |||||||    
T  1290196 atctttggtccttttggtcaattttgaccgagtcaacgcctaagtggcatgccacatgtgtaattaattaa 1290126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 49306764 - 49306911
Alignment:
Q  188 agtactttgaaggttaaagtgcacttttt-cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatt 286  Q
    ||||||||  ||| ||||||||||||||| |||| |||||| ||||| |||||||||||||| | || ||||||||| |||||||||| ||  || ||||    
T  49306764 agtactttttaggctaaagtgcacttttttcccccaactttcaaaaacttgcaattttggccatttaagtacaaaaactacaattttgcccaatatgatt 49306863  T
Q  287 tagcctctctgcatctttgatctttttagtcaattttgacaaagtcaa 334  Q
    ||| |  | |||||||||| || ||||  |||||||||||||||||||    
T  49306864 tagtcattttgcatctttggtcctttttatcaattttgacaaagtcaa 49306911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 369
Target Start/End: Original strand, 12129625 - 12129796
Alignment:
Q  201 ttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctg 297  Q
    ||||||||||||||| |||   ||||||| ||||| ||||||||||||||   || ||||||||| ||||||||||| || |||||||||||||  | ||    
T  12129625 ttaaagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaaactacaattttgaccccttaagatttagcccatttg 12129724  T
Q  298 catctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||| || ||||  |||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  12129725 catctttggtcattttgatcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 12129796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 1835200 - 1835038
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| |  |||||||||| ||||| ||||||||||| ||  ||| |||  |||| |||||||||||||   |||||||||||| || |||    
T  1835200 taaagtgcacttttccatccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccctttgc 1835101  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||| || |||||| ||||||||||   |||||||| | | |||||||||| ||||||||    
T  1835100 atctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaa 1835038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 1963199 - 1963272
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||||| ||||  ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  1963199 taaagtgcacttttccccccttaactttcaaaaagttgcaattttggcctcctatgtacaaaaactacaatttt 1963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 31599794 - 31599919
Alignment:
Q  204 aagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcat 300  Q
    |||||||||||||||||  ||||||||||||| ||||||||||| ||  ||| ||||||||| ||||||||| | ||  |||||||||||| || ||||     
T  31599794 aagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagcccctttgcaa 31599893  T
Q  301 ctttgatctttttagtcaattttgac 326  Q
    |||||||| |||| | ||||||||||    
T  31599894 ctttgatcctttttgccaattttgac 31599919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 50909771 - 50909643
Alignment:
Q  202 taaagtgcactttttcc--cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga--cctttaagatttagcctctctg 297  Q
    |||||||||||||||||  ||||| |||||||||||||| |||||| |   ||||||| ||||| |||||||||||  || ||||||||||||| || ||    
T  50909771 taaagtgcactttttccaccctaagttttaaaaagttgcgattttgactccctatgtataaaaactacaattttgacccccttaagatttagcccctttg 50909672  T
Q  298 catctttgatctttttagtcaattttgac 326  Q
    |||||||| || ||||  |||||||||||    
T  50909671 catctttggtccttttgatcaattttgac 50909643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 49308124 - 49307991
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcat 300  Q
    |||||||||||||| |||| ||||||| ||||| ||||||||||||||  ||| ||||||||| |||||||||| ||  || ||||| ||| ||  ||||    
T  49308124 taaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgccccctatgattttgcccctgcgcat 49308025  T
Q  301 ctttgatctttttagtcaattttgacaaagtcaa 334  Q
    ||||| || |||  |||||||||||| |||||||    
T  49308024 ctttggtcctttgggtcaattttgaccaagtcaa 49307991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 10448342 - 10448197
Alignment:
Q  216 tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatcttttta 314  Q
    |||||||| ||| |||||||||| ||||| |||  ||||||||||||| ||||||||| | ||| |||||| ||||| || |||||||||| || ||||     
T  10448342 tcccctaagtttcaaaaagttgcgattttagccccctatgtacaaaaactacaattttggccctctaagatatagcccctttgcatctttggtccttttg 10448243  T
Q  315 gtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    | ||||||||||  |||||| || |  ||||||||||| ||||||||    
T  10448242 gccaattttgac-cagtcaatgcctacgtggcatgccacgtgtgtaa 10448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 19750672 - 19750538
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgca 299  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||  ||| ||||||||| |||||||||   ||  |||||||||||| |  ||||    
T  19750672 taaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgca 19750573  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaa 334  Q
      ||||||| |||| |||| ||||||| |||||||    
T  19750572 aatttgatccttttggtcacttttgaccaagtcaa 19750538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 19789134 - 19789268
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgca 299  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||  ||| ||||||||| |||||||||   ||  |||||||||||| |  ||||    
T  19789134 taaagtgcacttttcccccctaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttacccccctaagatttagccccattgca 19789233  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaa 334  Q
      ||||||| |||| |||| ||||||| |||||||    
T  19789234 aatttgatccttttggtcacttttgaccaagtcaa 19789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 27258062 - 27257966
Alignment:
Q  197 aaggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcc 291  Q
    |||| |||| |||||||| |||||| |||||||||||||||||||||||| || ||||| |||||||| | ||||||| | || |||||||||||||    
T  27258062 aaggataaaatgcactttctccccttaacttttaaaaagttgcaattttgaccctctatatacaaaaactccaattttaaccccttaagatttagcc 27257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 369
Target Start/End: Original strand, 8155739 - 8155910
Alignment:
Q  200 gttaaagtgcactttttcccctaacttttaaaaagttgcaattttggc-cttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctg 297  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||| || |  ||| || |||||| ||||||||| | ||  |||||||||||| || ||    
T  8155739 gttaaagtgcacttttccccctaactttcaaaaacttgcaattttagctcccctaagttcaaaaactacaattttggccccctaagatttagccgctttg 8155838  T
Q  298 catctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||  || |||| ||||| ||||||  | ||||||| |  || ||| |||| |||||||| |||||||    
T  8155839 catctttagtcattttggtcaactttgacttattcaacgcctacgtagcaggccacgtgtgtaattaattaa 8155910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 8757678 - 8757804
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgca 299  Q
    ||||||||||||||||||| ||||||| ||||| || ||||||| |||  ||| ||||| ||| ||||||||| |||| ||||||||||||| |  ||||    
T  8757678 taaagtgcactttttccccttaactttcaaaaacttacaattttagccccctaagtacagaaactacaattttggacccttaagatttagccccattgca 8757777  T
Q  300 tctttgatctttttagtcaattttgac 326  Q
      ||| ||| |||| ||||||||||||    
T  8757778 attttaatccttttggtcaattttgac 8757804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 37729845 - 37729807
Alignment:
Q  39 taaacaatatggtctctatatttatcacatgttattaat 77  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37729845 taaacaatatggtctctatatttatcacatgttattaat 37729807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 50909287 - 50909353
Alignment:
Q  212 tttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct 278  Q
    |||||||||||| ||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||    
T  50909287 tttttcccctaagttttaaaaagttgcaattttgacctcctatatataaaaactacaattttaacct 50909353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 46638802 - 46638685
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||| ||||||||| |||||||  |  ||||| ||||||||||||||||| | ||  |||||||||| | || |||| ||||  |||||||  ||||    
T  46638802 taactttcaaaaagttggaattttgatcccctatgaacaaaaattacaattttagccccctaagatttagtccctttgcaactttagtctttttgatcaa 46638703  T
Q  320 ttttgacaaagtcaacgc 337  Q
    ||||||||||||||||||    
T  46638702 ttttgacaaagtcaacgc 46638685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 337
Target Start/End: Original strand, 10470544 - 10470687
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctc 293  Q
    |||| |||||||||||||| ||||  ||||||| ||||| ||||||||||| || |||| |||| ||||| ||||||| |  ||  |||||||||||| |    
T  10470544 aaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccctctaagtaccaaaatcacaatttagcccccctaagatttagcccc 10470643  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
      |||| ||||| || ||||  ||||||||||| ||||||||||    
T  10470644 attgcaactttggtccttttgatcaattttgaccaagtcaacgc 10470687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 1289096 - 1289258
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctct 294  Q
    ||||||||||| |||||| ||||  ||||||| ||| | ||| |||||||  | |||| ||| ||||| |||||||||  ||| |||||||||| || |     
T  1289096 aggttaaagtgaacttttccccccttaactttcaaatatttgtaattttgatcctctaagtataaaaactacaattttagcctcttaagatttaaccccc 1289195  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgt 357  Q
     |||||||||| || |||| ||||||||||||  ||||||||| |  ||||||||||| ||||    
T  1289196 ttgcatctttggtccttttggtcaattttgaccgagtcaacgcttaagtggcatgccacgtgt 1289258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 1964539 - 1964465
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| | ||  |||||||||||||||| |||||||||||  ||||| ||||||| ||||||||||    
T  1964539 taaagtgcacttttccacccttaacttttaaaaagttacaattttggccccctatgaacaaaaactacaattttg 1964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 8758940 - 8758844
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagc 290  Q
    ||||||||| ||||||||| ||||  ||||||| ||||| ||||||||||||||  ||| ||||| ||| ||||||||| | || ||||||||||||    
T  8758940 aaggttaaaatgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggccccttaagatttagc 8758844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 17382996 - 17383069
Alignment:
Q  202 taaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||| |   || ||||||||| ||||||||||    
T  17382996 taaagtgcacttttctcccctaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttg 17383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 35934347 - 35934472
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcat 300  Q
    |||||||||||||| ||||||||||| ||||| ||| |||||||| |  ||| ||| | |||||| |||||| | || ||||||||||||| |  ||||     
T  35934347 taaagtgcacttttccccctaactttcaaaaacttgtaattttggtcccctaagtaaagaaattataattttggccccttaagatttagccccattgcaa 35934446  T
Q  301 ctttgatctttttagtcaattttgac 326  Q
    |||| ||  |||| ||||||||||||    
T  35934447 ctttaattcttttggtcaattttgac 35934472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 35935632 - 35935504
Alignment:
Q  201 ttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctg 297  Q
    ||||||||||||||  ||||  ||||||||||||| |||||||||| |||  ||| ||||| ||| ||||||||| | ||  ||||||||||||||  ||    
T  35935632 ttaaagtgcactttcccccccttaacttttaaaaatttgcaattttagccccctaagtacataaactacaattttggccccctaagatttagcctcattg 35935533  T
Q  298 catctttgatctttttagtcaattttgac 326  Q
    || |||| ||| |||| | ||||||||||    
T  35935532 caactttaatccttttggccaattttgac 35935504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 54110728 - 54110653
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||| ||||||  || ||||||| ||||| ||||||||||| ||| | |||||||||||||| ||||||    
T  54110728 aaggttaaagtgtacttttatcc-taactttaaaaaatttgcaattttgacctccaatgtacaaaaattataatttt 54110653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 55603632 - 55603585
Alignment:
Q  198 aggttaaagtgcactttttcccc-taacttttaaaaagttgcaatttt 244  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  55603632 aggttaaagtgcactttttccccttaactttcaaaaacttgcaatttt 55603585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 21178016 - 21178126
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| | |||||||||||||||  |  ||||| ||||||| ||||||||||| ||  ||| ||||||||  | |||| |||||||| |||| |    
T  21178016 cccctaactttcataaagttgcaattttgatcccctatgaacaaaaactacaattttgaccccctaaaatttagcccttttgcaactttgatcatttttg 21178115  T
Q  316 tcaattttgac 326  Q
     ||||||||||    
T  21178116 ccaattttgac 21178126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 10447009 - 10447116
Alignment:
Q  202 taaagtgcactttttcccct---aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctg 297  Q
    |||||||||||||| |||||   || ||| |||||||||||||||| |||  |||||||||||||  ||||||||   ||  |||||||||||| || ||    
T  10447009 taaagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatgtacaaaaaccacaattttacccccctaagatttagcccctttg 10447108  T
Q  298 catctttg 305  Q
    ||||||||    
T  10447109 catctttg 10447116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 2193549 - 2193505
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttgg 246  Q
    ||||||||| |||||||| ||| ||| ||||||||||||||||||    
T  2193549 taaagtgcaatttttcccttaagtttaaaaaagttgcaattttgg 2193505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 2412914 - 2412850
Alignment:
Q  302 tttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| |||||||||||||||||  | ||||| | || ||||||||||| | |||||||||||    
T  2412914 tttgatccttttagtcaattttgacttaatcaacacctgcgtggcatgccacgcgtgtaaataat 2412850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 3927664 - 3927743
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||| |||||||||||||| |||||  ||||||||||| ||||| |||||||||  | |||||  |||| ||||||||||    
T  3927664 aaggctaaagtgcacttttccccctctaacttttaaaatgttgcgattttggccccccatgtatgaaaactacaattttg 3927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 21539144 - 21539092
Alignment:
Q  225 ttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc 277  Q
    ||||||||| ||||||||||||||| ||| ||  ||||| |||||||||||||    
T  21539144 ttttaaaaacttgcaattttggcctcctaagtgtaaaaactacaattttgacc 21539092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 337
Target Start/End: Original strand, 11282007 - 11282149
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||| ||||||||| |||||||||| ||  ||||||||| || ||    
T  11282007 aggttaaagtgcactttttcccccttaacttttaaaaagttgcaattttggccccctatatacaaaaatgacaattttgaccccctaagatttaacccct 11282106  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
     ||||  ||||||||||||  ||||||||||||||||||||||    
T  11282107 ttgcaattttgatctttttgatcaattttgacaaagtcaacgc 11282149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 30335663 - 30335809
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||||||||| |||||||||||||   ||| ||||||||||||||||||| |||   |||||||||||| || |||||||||| || ||||  ||||    
T  30335663 taacttttaaaaacttgcaattttggctcgctaagtacaaaaattacaattttaaccccctaagatttagcccctttgcatctttggtccttttgttcaa 30335762  T
Q  320 ttttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||    
T  30335763 ttttgaccaagtcaacgcatgtgtggcatgccacatgtgtaaataat 30335809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 30336599 - 30336432
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||| ||||||  ||||||| ||||| ||  |||||| |||| ||| ||||||||| ||||||||| ||| | ||||||||||||  | |||    
T  30336599 taaagtgcacttcttcccccctaactttcaaaaacttataattttagcctcctaagtacaaaaactacaattttaaccctctaagatttagccattttgc 30336500  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| || |||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||||    
T  30336499 atctttggtccttttggtcaattttgaccaagtcaatgcatgtgtggcatgccacgtatgtaaataat 30336432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 24359807 - 24359972
Alignment:
Q  197 aaggttaaagtgcactttttccc-ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctct 294  Q
    |||| |||||||| ||||||||| ||||||||||||||||||| ||||| |||| |||| |||||||| |||||||||||||   ||||||||||||| |    
T  24359807 aaggctaaagtgctctttttccctctaacttttaaaaagttgcgatttttgcct-ctatatacaaaaactacaattttgaccccctaagatttagcctat 24359905  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     |||||||||  ||  ||| |||||||||||| || ||||||| | | ||||||| |||||||||||    
T  24359906 ttgcatctttagtcactttggtcaattttgaccaaatcaacgcttatttggcatgtcatgtgtgtaa 24359972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 43661900 - 43661754
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||| ||||||||||||||||   | |||||||||||||| || ||||||| ||   |||||||| |||    |||||||||| || ||||  ||||    
T  43661900 taactttcaaaaagttgcaattttaatcctctatgtacaaaaactaaaattttggccccctaagatttcgcccaattgcatctttggtccttttgatcaa 43661801  T
Q  320 ttttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||    
T  43661800 ttttgaccaagtcaacgcatgtgtggcatgccacatgtgtaaataat 43661754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 5514367 - 5514263
Alignment:
Q  202 taaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcat 300  Q
    |||||||||||||| |||||||| ||| ||||| |||||||||| ||||||||  |||||||| |||||||||||||| ||| ||||||||  | |||||    
T  5514367 taaagtgcacttttatcccctaattttaaaaaacttgcaattttagccttctaaatacaaaaactacaattttgacctctaaaatttagcccatttgcat 5514268  T
Q  301 ctttg 305  Q
    |||||    
T  5514267 ctttg 5514263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 32207426 - 32207302
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctc 295  Q
    |||| |||||||||||||  |||||||| || ||||| ||||||||||| |   ||| ||||||||| |||||||||| ||| ||||||||||||||||     
T  32207426 aaggctaaagtgcactttcccccctaaccttcaaaaacttgcaattttgacgccctaagtacaaaaactacaattttggcctcttaagatttagcctctt 32207327  T
Q  296 tgcatctttgatctttttagtcaat 320  Q
    |||||||||| || |||| ||||||    
T  32207326 tgcatctttggtccttttggtcaat 32207302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 8388462 - 8388539
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||| |||  ||||||||||||| || |||||||    
T  8388462 aaggctaaagtgcactttcccccctaacttttaaaaagttgcaattttagccccctatgtacaaaaactataattttg 8388539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 11283286 - 11283169
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||| ||||||||| |||||| |||  ||||||| |||||| |||||||||  ||  ||| |||||||| || ||||  ||||||| ||||||||||    
T  11283286 taactttcaaaaagttgtaattttagccccctatgtataaaaatgacaattttggtcccctaaaatttagcccctttgcaattttgatcattttagtcaa 11283187  T
Q  320 ttttgacaaagtcaacgc 337  Q
    ||||||||||||||||||    
T  11283186 ttttgacaaagtcaacgc 11283169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 361
Target Start/End: Complemental strand, 2380010 - 2379860
Alignment:
Q  210 actttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctctgcatctttgatc 308  Q
    |||||| ||||||||||| ||||||||| ||||||||||  |||||||| ||| | ||||||||| ||  ||||||||||||   | |||||||||| |     
T  2380010 acttttccccctaactttcaaaaagttgtaattttggccc-ctatgtacgaaact-acaattttggccccttaagatttagctcatttgcatctttggtt 2379913  T
Q  309 tttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     |||| |||||||||||| |||||||||| | | || ||||||||||||||||    
T  2379912 cttttggtcaattttgaccaagtcaacgcttatttgacatgccatgtgtgtaa 2379860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 22221467 - 22221300
Alignment:
Q  197 aaggttaaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctc 293  Q
    |||| |||||||||||||| |  |||||||||| ||||| ||||||||||| ||  ||| |||  |||| |||||||||||||   |||||||||||| |    
T  22221467 aaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccc 22221368  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    | | ||||||||||| |||||| ||||||||||   |||||||| | | ||| |||||| ||||||||    
T  22221367 tttacatctttgatccttttagccaattttgacttggtcaacgcttatttggtatgccacgtgtgtaa 22221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 22227809 - 22227642
Alignment:
Q  197 aaggttaaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctc 293  Q
    |||| |||||||||||||| |  |||||||||| ||||| ||||||||||| ||  ||| |||  |||| |||||||||||||   |||||||||||| |    
T  22227809 aaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcccc 22227710  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    | | ||||||||||| |||||| ||||||||||   |||||||| | | ||| |||||| ||||||||    
T  22227709 tttacatctttgatccttttagccaattttgacttggtcaacgcttatttggtatgccacgtgtgtaa 22227642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 358
Target Start/End: Original strand, 43661268 - 43661427
Alignment:
Q  202 taaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    ||||||||||||||   ||| ||| ||| |||||||| ||||||||| |   |||||||||||| || ||||||| ||   |||||||||||| || |||    
T  43661268 taaagtgcacttttctacccttaattttaaaaaagttacaattttggtcccttatgtacaaaaactataattttggccccctaagatttagcccctttgc 43661367  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtg 358  Q
    ||||||| |  |||| ||||| |||||| |||||||||||| |||||||||||| |||||    
T  43661368 atctttggttcttttggtcaactttgaccaagtcaacgcatatgtggcatgccacgtgtg 43661427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 10006347 - 10006517
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| |||||  |||||| ||||| ||||||||||||||  ||| |||  ||||  ||||||||| ||   |||||||||||| || |||    
T  10006347 taaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcccctttgc 10006446  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  10006447 atctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 10006517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 10007861 - 10007691
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||||||  ||| ||| | |||  |||||||||  ||  |||||||||||| || |||    
T  10007861 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggtcccctaagatttagcccctttgc 10007762  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  10007761 atctttggtccttttcgtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 10007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 366
Target Start/End: Original strand, 2378863 - 2379030
Alignment:
Q  198 aggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctct 296  Q
    |||||||||||||||||||||  |||||||||||||||| | ||||||  |  |||| ||||||||  | ||||||||||  ||||||| |||||| | |    
T  2378863 aggttaaagtgcactttttcc--taacttttaaaaagttacgattttgatcccctatatacaaaaaccataattttgaccccttaagatctagcctattt 2378960  T
Q  297 gcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||||| || ||||  ||||||||||| || |||| || | | ||||||| || |||||||| ||||    
T  2378961 gcatctttggtccttttgatcaattttgaccaaatcaatgcttatttggcatgtcacgtgtgtaattaat 2379030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 24123975 - 24123869
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||| ||||| |||||||||||||||  || |||| ||||||||||||||  |||  |||||||||||| || |||||||||| || |||| |||||    
T  24123975 taactttcaaaaacttgcaattttggcctcttaagtactaaaattacaattttagcctcctaagatttagcccctttgcatctttggtccttttggtcaa 24123876  T
Q  320 ttttgac 326  Q
    |||||||    
T  24123875 ttttgac 24123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 30570358 - 30570227
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctc 293  Q
    ||||||||||||||| |||||||||  || |||||||||||||||||||||  | | ||||||||||||||| |||||| | ||  ||||||||||||      
T  30570358 aaggttaaagtgcaccttttcccctctaagttttaaaaagttgcaattttgatcct-tatgtacaaaaattagaattttggccccctaagatttagccct 30570260  T
Q  294 tctgcatctttgatctttttagtcaattttgac 326  Q
    | |||||||||| || |||| | ||||||||||    
T  30570259 tttgcatctttggtccttttggccaattttgac 30570227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 29968436 - 29968364
Alignment:
Q  200 gttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatt 271  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||  ||| ||||||||| |||||||    
T  29968436 gttaaagtgcacttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaatt 29968364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 1823550 - 1823627
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattt 272  Q
    |||| ||||||| |||||||||||  ||||||||||||| ||||||||||| || |||| ||||||||| ||||||||    
T  1823550 aaggctaaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaattt 1823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 1857995 - 1858072
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattt 272  Q
    |||| ||||||| |||||||||||  ||||||||||||| ||||||||||| || |||| ||||||||| ||||||||    
T  1857995 aaggctaaagtgtactttttcccccttaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaattt 1858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 5513985 - 5514111
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctctctgca 299  Q
    |||||||||||||| |||| ||||||| ||||| || |||||||||||  ||| ||||||||| ||||||||||  ||  ||| |||||||| || ||||    
T  5513985 taaagtgcacttttaccccctaactttcaaaaacttccaattttggccccctaagtacaaaaactacaattttgcccccctaaaatttagcccctttgca 5514084  T
Q  300 tctttgatctttttagtcaattttgac 326  Q
    |||||| || ||||  |||||||||||    
T  5514085 tctttggtccttttgatcaattttgac 5514111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 24122902 - 24123012
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||| ||||||||||| ||  ||| ||||||||| || |||||| | ||  ||||||||||| ||| |||||||||| || |||| |    
T  24122902 cccctaactttaaaaaatttgcaattttgaccccctaagtacaaaaactataattttagtcccctaagatttagcttctttgcatctttggtccttttgg 24123001  T
Q  316 tcaattttgac 326  Q
    |||||||||||    
T  24123002 tcaattttgac 24123012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 24361292 - 24361199
Alignment:
Q  200 gttaaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcc 291  Q
    |||||||||||||||| | || | | ||||||||| || | ||||||| | |||||||||||||||||||||||| | ||||||||||||||||    
T  24361292 gttaaagtgcacttttcttcctttatttttaaaaaatttcgattttggtcctctatgtacaaaaattacaattttaatcctttaagatttagcc 24361199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 45114597 - 45114488
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcatctttgatctttttagt 316  Q
    ||||||||||| ||||| ||||||||||||    ||||||||| ||| |||||||||| ||| ||||||||| ||||  |||| |||| ||| |||| ||    
T  45114597 cccctaactttcaaaaacttgcaattttggttcactatgtacacaaactacaattttggcctctaagatttaacctcattgcaactttaatcattttggt 45114498  T
Q  317 caattttgac 326  Q
     |||||||||    
T  45114497 taattttgac 45114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 29043401 - 29043528
Alignment:
Q  202 taaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||| |||||||  |||| |||| || ||||||| || |||||| ||  ||||||||||||| |||||||||  || | |||||||||||| || ||     
T  29043401 taaagttcacttttcctcccttaaccttcaaaaagtcgcgattttgaccccctatgtacaaaaactacaattttttccctctaagatttagcccctttgt 29043500  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    |||||||||| |||||| ||||||||||    
T  29043501 atctttgatccttttagacaattttgac 29043528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 1824156 - 1824049
Alignment:
Q  220 ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtca 318  Q
    |||||||| ||||| |||||||||||| |  ||| ||||||||| ||||||||| | ||  ||||||||||||  | |||||||||| || |||| ||||    
T  1824156 ctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtccttttggtca 1824057  T
Q  319 attttgac 326  Q
    ||||||||    
T  1824056 attttgac 1824049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 1858601 - 1858494
Alignment:
Q  220 ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtca 318  Q
    |||||||| ||||| |||||||||||| |  ||| ||||||||| ||||||||| | ||  ||||||||||||  | |||||||||| || |||| ||||    
T  1858601 ctaactttcaaaaacttgcaattttggtcccctaagtacaaaaactacaattttggccccctaagatttagccattttgcatctttggtccttttggtca 1858502  T
Q  319 attttgac 326  Q
    ||||||||    
T  1858501 attttgac 1858494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 11287779 - 11287853
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||||||  ||| ||||| ||| ||||||||||    
T  11287779 taaagtgcactttttcacccctaactttaaaaaacttgcaattttggcccactaagtacagaaactacaattttg 11287853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 22220391 - 22220553
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||  |||||| ||| | ||||||||||| ||  ||||||| ||||| ||||||||| | ||  ||||||||||||  | |||    
T  22220391 taaagtgcacttttccccctctaactttaaaatacttgcaattttgaccccctatgtataaaaactacaattttggccccctaagatttagcccatttgc 22220490  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||| || ||||  ||||||||||  ||||||| ||   | |||||||||| ||||||||    
T  22220491 atctttggtccttttgatcaattttgagcaagtcaatgctgatttggcatgccacgtgtgtaa 22220553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 40471249 - 40471100
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctc 293  Q
    ||||||||||||||||||| |||||  |||||| ||||| || ||||||||| |   ||  |||||||| ||||||||| | || |||||||||| ||||    
T  40471249 aaggttaaagtgcacttttccccctttaactttaaaaaacttacaattttggtcca-taaatacaaaaactacaattttagccccttaagatttaacctc 40471151  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtg 344  Q
    | || ||||||| || |||| ||||||||||||  |||||| ||| |||||    
T  40471150 tttgtatctttggtcattttggtcaattttgaccgagtcaatgcacgtgtg 40471100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 18978039 - 18978149
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||  || |||||||||||  ||| ||||||||| ||||||||| | || ||||||||||||| || |||| |||||||| ||||      
T  18978039 cccctaactttcaaaatctttcaattttggccccctaagtacaaaaactacaattttggccccttaagatttagcccctttgcaactttgatcctttttt 18978138  T
Q  316 tcaattttgac 326  Q
     ||||||||||    
T  18978139 ccaattttgac 18978149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 365
Target Start/End: Original strand, 40469356 - 40469509
Alignment:
Q  213 ttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatcttt 311  Q
    ||||||| ||||||| ||||| ||| ||||||   | ||||  |||||||||||||||||| |||   |||||||||| | || || ||||||| |  ||    
T  40469356 ttttcccttaactttcaaaaatttgtaattttcatcctctaaatacaaaaattacaattttaaccacataagatttagtccctttgtatctttggttctt 40469455  T
Q  312 ttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataa 365  Q
    ||  ||||||||||| |||| ||| ||||||||||||| ||  |||||||||||    
T  40469456 ttgatcaattttgaccaagtaaacacatgtgtggcatgtcacatgtgtaaataa 40469509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 8389791 - 8389714
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||||||||| |||   ||| ||| |||||||||||||||||| |   |||||||||||| |||||||||    
T  8389791 aggttaaagtgcacttttcccctcttaagtttcaaaaagttgcaattttggtcccttatgtacaaaaactacaatttt 8389714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 12353462 - 12353396
Alignment:
Q  197 aaggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaa 262  Q
    |||| |||||||||||||| ||||| |||||| ||||| ||||||||||||||  ||| ||||||||    
T  12353462 aaggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagtacaaaa 12353396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 18970930 - 18971040
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||  || |||||||||||  ||| ||||||||| ||||||||||| || | |||||||| || || |||| ||||| || |||| |    
T  18970930 cccctaactttcaaaatctttcaattttggccccctaagtacaaaaactacaattttgacccctgaagatttaacccctttgcaactttggtcctttttg 18971029  T
Q  316 tcaattttgac 326  Q
     ||||||||||    
T  18971030 ccaattttgac 18971040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 36249555 - 36249624
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaa 269  Q
    |||||||||||||| ||||  ||| ||| ||||||||||||||||||||| ||||| | |||||| ||||    
T  36249555 taaagtgcacttttccccccttaagtttcaaaaagttgcaattttggcctcctatgaataaaaatgacaa 36249624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 3208263 - 3208206
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||| |||||||||||||| ||||| |||| |||| || |||||| |||||||||    
T  3208263 cccctaagttttaaaaagttgcgattttagcctcctatttaaaaaaataacaattttg 3208206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 12351945 - 12352018
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    ||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||||| ||  ||||||||||||||    
T  12351945 taactttcaaaaatttgcaattttgaccccctaagtacaaaaactacaattttgaccccctaagatttagcctc 12352018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 18979218 - 18979090
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| || || ||||||||||||||  |||  || ||||| ||||||||| | || ||| |||||||||  | |||    
T  18979218 taaagtgcacttttccccccctaactttcaacaacttgcaattttggccccctaaatataaaaactacaattttggccccttatgatttagcccatttgc 18979119  T
Q  299 atctttgatctttttagtcaattttgaca 327  Q
    | |||||||| |||| | |||||||||||    
T  18979118 aactttgatcctttttgccaattttgaca 18979090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 357
Target Start/End: Complemental strand, 22940720 - 22940563
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgca 299  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||||||  ||| |||||||||||||||||||||||  ||| |||||||| || | ||    
T  22940720 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaattacaattttgacccctaaaatttagccccttttca 22940621  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgt 357  Q
    ||||| ||| |||| |||||||||||| |||||||||| |  ||||||||||| ||||    
T  22940620 tcttttatccttttggtcaattttgaccaagtcaacgcctaagtggcatgccacgtgt 22940563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 361
Target Start/End: Original strand, 42195136 - 42195297
Alignment:
Q  201 ttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgca 299  Q
    ||||||||||||||| ||||| |  ||||||||||||| |||||||||  ||||||||||||  ||||||||| | ||  |||||||||||| || ||||    
T  42195136 ttaaagtgcacttttcccccttaactttaaaaagttgcgattttggccccctatgtacaaaatctacaattttggtcccctaagatttagcccctttgca 42195235  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    |||||| || |||| |||||||||||| ||||||||||   | |||||||||| ||||||||    
T  42195236 tctttggtccttttggtcaattttgaccaagtcaacgctgatttggcatgccacgtgtgtaa 42195297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 16650050 - 16650162
Alignment:
Q  255 gtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccat 353  Q
    ||||||||| ||||||||||||| | ||||||||| || || |||||||||| || |||| |||||||||||| ||||||| |||||||||||||||||     
T  16650050 gtacaaaaactacaattttgaccctctaagatttaacccctttgcatctttggtccttttggtcaattttgaccaagtcaatgcatgtgtggcatgccac 16650149  T
Q  354 gtgtgtaaataat 366  Q
    |||||||||||||    
T  16650150 gtgtgtaaataat 16650162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 24332911 - 24333077
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    ||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||||   |||||||||||| ||||||||||| ||| ||||||||| || |    
T  24332911 aaggttaaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccc 24333010  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    | |||||||||| || |||| ||||||||||||  |||||| || |  ||||||||||| ||||||||    
T  24333011 tttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtgtaa 24333077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 16650953 - 16650786
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| | ||  ||||||||||||| ||||||||||| ||  ||| ||| ||||| ||||||||| | ||  |||| |||||||  | |||    
T  16650953 taaagtgcacttttccacccttaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttagccccctaaggtttagcccatttgc 16650854  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| || |||| |||||||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  16650853 atctttggtccttttggtcaattttgatcaagtcaacgcatgtgtggcatgccacgtgtgtaattaat 16650786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 25523072 - 25523242
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| |||||||||| |||  ||| ||||||||| ||||||||||| ||  |||||||||||| || |||    
T  25523072 taaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccctaagatttagcccctttgc 25523171  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||||| ||||  ||||||||||   | ||||||| |  ||||| ||||| |||||||| |||||||    
T  25523172 atctttgatccttttgatcaattttgatttattcaacgcctacgtggcctgccacgtgtgtaattaattaa 25523242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 2186774 - 2186900
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgca 299  Q
    ||||||||| ||||||||| ||| ||| |||||||||||||||||| |||||||||||||||| ||||||||| | ||  ||||||||||||  | | ||    
T  2186774 taaagtgcattttttccccctaagtttcaaaaagttgcaattttggtcttctatgtacaaaaactacaattttaatcccctaagatttagccattttaca 2186873  T
Q  300 tctttgatctttttagtcaattttgac 326  Q
    |||||| || |||| ||||||||||||    
T  2186874 tctttggtccttttggtcaattttgac 2186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 19752910 - 19753084
Alignment:
Q  197 aaggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctct 294  Q
    |||| |||||||||||||| |||| ||||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||| | ||  || ||||||||| |     
T  19752910 aaggctaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccctatgatttagcccca 19753009  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
     |||||||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  19753010 ttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 19753084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 42196281 - 42196160
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttag 315  Q
    |||||||||||||||||||||  | ||||||| |||||||||||||| |||| |||| | ||  ||||||||||||  | |||||||||| || |||| |    
T  42196281 cccctaacttttaaaaagttgtgaatttggccctctatgtacaaaaactacatttttagtcccctaagatttagcccatttgcatctttggtccttttgg 42196182  T
Q  316 tcaattttgacaaagtcaacgc 337  Q
    ||||||||||| ||||||||||    
T  42196181 tcaattttgaccaagtcaacgc 42196160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 28539922 - 28539791
Alignment:
Q  197 aaggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctct 294  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||||||| || |||| ||||||||| ||||||||| | ||  |||||||||| | ||    
T  28539922 aaggttaaagtgcatttttcccccctaacttttaaaaacttgcaattttgaccctctaagtacaaaaactacaattttggtcccctaagatttagtccct 28539823  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     |||| |||||||| |||| | ||||||||||    
T  28539822 ttgcaactttgatcctttttgccaattttgac 28539791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 36486584 - 36486459
Alignment:
Q  204 aagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcat 300  Q
    |||||||||||||||||  ||||||||||||| ||||||||||| ||  ||| ||||||||| ||||||||| | ||  |||||||||| | || ||||     
T  36486584 aagtgcactttttcccccctaacttttaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggtcccctaagatttagtccctttgcaa 36486485  T
Q  301 ctttgatctttttagtcaattttgac 326  Q
    |||||||| |||| ||||||||||||    
T  36486484 ctttgatcctttttgtcaattttgac 36486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 1016965 - 1016885
Alignment:
Q  198 aggttaaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac 276  Q
    ||||||||||| | |||||  ||||||| ||||||||| ||| |||||||| |||||||||||||||| ||||||||||||    
T  1016965 aggttaaagtgtatttttttccccctaatttttaaaaaattgtaattttggtcttctatgtacaaaaactacaattttgac 1016885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 18487000 - 18486830
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||  ||||  ||||||| ||||| ||||||||||||||  ||| ||| | |||  ||||||||| ||   |||||||||||| || |||    
T  18487000 taaagtgcactttcccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaaccacaattttggccccctaagatttagcccctttgc 18486901  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  18486900 atctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 18486830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 20214199 - 20214272
Alignment:
Q  202 taaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| ||||| |||||| ||||| |||||||||| ||  |||||||||||||| ||||||||||    
T  20214199 taaagtgcacttttcccccttaactttcaaaaacttgcaattttagcactctatgtacaaaaactacaattttg 20214272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 369
Target Start/End: Complemental strand, 25524158 - 25524026
Alignment:
Q  238 caattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacg 336  Q
    |||||||||||| ||| ||||||||| || ||||||||||   |||||||||||| || |||||||||  || |||| ||||||||||||  | ||||||    
T  25524158 caattttggcctcctaagtacaaaaactataattttgaccccctaagatttagcccctttgcatctttagtccttttggtcaattttgacttattcaacg 25524059  T
Q  337 catgtgtggcatgccatgtgtgtaaataattaa 369  Q
    | |  ||||||  ||| |||||||| |||||||    
T  25524058 cctacgtggcagaccacgtgtgtaattaattaa 25524026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 28538679 - 28538806
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| | ||  ||||||| ||||| ||||||||||| ||   || ||||||||| ||||||||| | ||  |||||||||||| || |||    
T  28538679 taaagtgcacttttccacccgtaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttagccccctaagatttagcccctttgc 28538778  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    | |||||||| |||| ||||||||||||    
T  28538779 aactttgatcctttttgtcaattttgac 28538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 21835039 - 21835162
Alignment:
Q  197 aaggttaaagtgcactttttccc-ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||| |||||||||||||  ||| |||| ||| |||||||||  |||||| ||  ||||||||||||| ||||||||||| ||  ||||||||| || ||    
T  21835039 aaggctaaagtgcactttccccctctaagtttgaaaaagttgtgattttgaccccctatgtacaaaaactacaattttgaccccctaagatttaacccct 21835138  T
Q  295 ctgcatctttgatctttttagtca 318  Q
     |||| |||||||| |||||||||    
T  21835139 ttgcaactttgatccttttagtca 21835162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 18485136 - 18485318
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgaccttt--------aagatt 286  Q
    |||| ||||||||||||||||||||  |||||| ||||| ||||||||||||||  ||| |||  ||||  |||||||||   |||        ||||||    
T  18485136 aaggctaaagtgcactttttcccctctaactttaaaaaacttgcaattttggccccctaagtatcaaaacaacaattttgggttttggccccctaagatt 18485235  T
Q  287 tagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||| || ||||||||||||| |||| || |||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  18485236 tagcccctttgcatctttgatccttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 18485318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 1015503 - 1015560
Alignment:
Q  216 tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    ||||||||||||||||||||| |||||||||||  || |||||||||  |||||||||    
T  1015503 tcccctaacttttaaaaagttacaattttggccccctgtgtacaaaacctacaatttt 1015560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 38834087 - 38834162
Alignment:
Q  199 ggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||| ||||| |||  |||||||||||||||||| |||||| || | |||||||||||| |||||||||    
T  38834087 ggttaaagtgcatttttttccccttaacttttaaaaagttgcgattttgaccct-tatgtacaaaaactacaatttt 38834162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 21835016 - 21834944
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||||| |||  ||| ||| |||||||||||| |||| ||||||||| ||||||| |||||||||    
T  21835016 taaagtgcacttttcccctataagtttgaaaaagttgcaaatttgaccttctatgaacaaaaactacaatttt 21834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 25056460 - 25056316
Alignment:
Q  219 cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc-tctgcatctttgatctttttagt 316  Q
    ||||||||| ||||| ||||||||||| ||  ||| |||  |||| ||||||||||| ||  |||||||||||||| | | |||||||| |  ||||||     
T  25056460 cctaactttcaaaaacttgcaattttgaccccctaagtattaaaactacaattttgaccccctaagatttagcctcatttacatctttggttgttttagc 25056361  T
Q  317 caattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||||||   |||||||| | | |||||||||| ||||||||    
T  25056360 caattttgacttggtcaacgcttatttggcatgccacgtgtgtaa 25056316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 369
Target Start/End: Complemental strand, 2686505 - 2686329
Alignment:
Q  198 aggttaaagtgcactttttccc----ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcct 292  Q
    |||||||||||||||||  |||    |||||||||||||| |||||||||||  ||  || ||||||||| || |||||| | ||  || ||||||||||    
T  2686505 aggttaaagtgcactttccccctcctctaacttttaaaaacttgcaattttgatctcttaagtacaaaaactataattttggtcccctatgatttagcct 2686406  T
Q  293 ctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |  |||||||||| || ||||  |||||||||||  | ||||||| |  ||  || ||||||||||||| |||||||    
T  2686405 cattgcatctttggtccttttgatcaattttgacttattcaacgcctacgtatcaggccatgtgtgtaattaattaa 2686329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 33158096 - 33158178
Alignment:
Q  197 aaggttaaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc 277  Q
    |||| ||||||||| |||||  ||||||||||| ||||| ||||||||||| |   ||| ||||||||| |||||||||||||    
T  33158096 aaggctaaagtgcatttttttccccctaactttcaaaaacttgcaattttgacaccctaagtacaaaaactacaattttgacc 33158178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 1796074 - 1796132
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga 275  Q
    ||||||||||| ||||| |||||| |||||||  ||| ||||||||| |||||||||||    
T  1796074 cccctaactttcaaaaacttgcaactttggccacctaagtacaaaaactacaattttga 1796132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 36485320 - 36485430
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||| || |||||||| |||  || ||||||||| || ||||||| ||   ||||||||| || || |||| |||||||| |||| |    
T  36485320 cccctaactttaaaaaacttacaattttgacctcttaagtacaaaaactataattttggccccctaagatttaacccctttgcaactttgatcatttttg 36485419  T
Q  316 tcaattttgac 326  Q
    |||||||||||    
T  36485420 tcaattttgac 36485430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 19754211 - 19754154
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||||||| ||||| ||||||||||||||  |||  |||||||| ||||||||||    
T  19754211 cccctaactttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttg 19754154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 34893686 - 34893739
Alignment:
Q  218 ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatt 271  Q
    |||||||||| ||||| |||||||||||||   ||||||||||||| |||||||    
T  34893686 ccctaactttcaaaaacttgcaattttggctccctatgtacaaaaactacaatt 34893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 7311610 - 7311666
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    ||||||||||| ||||| ||||||| ||||||| | | ||||||||| |||||||||    
T  7311610 cccctaactttcaaaaacttgcaatattggcctcccaagtacaaaaactacaatttt 7311666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 33160384 - 33160258
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||| ||| ||||| |||||||||| |||  ||| ||| | ||| ||||||||||| || ||||||||||||| |  |||    
T  33160384 taaagtgcacttttccccccttaattttcaaaaacttgcaattttagccccctaagtatagaaactacaattttgaccccttaagatttagcc-cattgc 33160286  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    | |||| ||| |||||| ||||||||||    
T  33160285 aactttaatccttttagccaattttgac 33160258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 197 - 364
Target Start/End: Complemental strand, 43378815 - 43378646
Alignment:
Q  197 aaggttaaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctct 294  Q
    ||||||||||||||||||| || | ||||||| ||||| || ||||||||  |  ||| |||||||||||||||||||||||   |||||||||||  ||    
T  43378815 aaggttaaagtgcacttttctctcttaactttcaaaaacttacaattttgatcccctaagtacaaaaattacaattttgaccacctaagatttagcacct 43378716  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaata 364  Q
     ||||||||| ||| |||| ||| |||||||| |||||||||||| |||||||||||| |||||||||||    
T  43378715 ttgcatctttaatccttttggtcgattttgaccaagtcaacgcatatgtggcatgccacgtgtgtaaata 43378646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 52274966 - 52275138
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    |||| |||||||||||||| ||||  ||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||||  ||  ||||||||||||||    
T  52274966 aaggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgggcccctaagatttagcctc 52275065  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
      ||||  ||||||| |||| ||||||||||||| ||||||||| || ||||||||||| |||||||||||||    
T  52275066 attgcaaatttgatccttttggtcaattttgacatagtcaacgcctgcgtggcatgccaagtgtgtaaataat 52275138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 24422803 - 24422970
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||| ||  ||| ||||||||| |||||||||| ||   |||||||||||| |  |||    
T  24422803 taaagtgcacttttacccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttggccccctaagatttagccccattgc 24422902  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |  ||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  24422903 aaatttgatccttttggtcaattttgacatagtcaacgcctgtgtggcatgccacgtgtgtaaataat 24422970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 361
Target Start/End: Complemental strand, 39153219 - 39153053
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    ||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||||   |||||||||||| ||||||||||| ||| ||||||||| || |    
T  39153219 aaggttaaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttgaccctctaagatttaacccc 39153120  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    | |||||||||| || |||| ||||||||||||  |||||| || |  ||||||||||| ||||||||    
T  39153119 tttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtgtaa 39153053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 337
Target Start/End: Original strand, 51684369 - 51684507
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||||||||||||||||||||||||  ||||||| ||||| ||||||||| | ||  |||||||||||| || |||    
T  51684369 taaagtgcacttttccccccttaacttttaaaaagttgcaattttggccccctatgtataaaaactacaattttggccccctaagatttagcccctttgc 51684468  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
    ||||||| || |||| | |||||||||| ||||||||||    
T  51684469 atctttggtccttttggccaattttgaccaagtcaacgc 51684507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 326
Target Start/End: Original strand, 39151930 - 39152061
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac-ctttaagatttagcctct 294  Q
    ||||||||||||| |||||||||  ||| ||| ||||| ||| ||||||||||  ||||||||||||| |||||||||||| |||||||||||| || ||    
T  39151930 aggttaaagtgcattttttcccccttaagtttcaaaaacttgtaattttggccccctatgtacaaaaactacaattttgactctttaagatttaacccct 39152029  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     |||||||||| || |||| ||||||||||||    
T  39152030 ttgcatctttggtccttttggtcaattttgac 39152061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 45157311 - 45157180
Alignment:
Q  197 aaggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||| |||||||||||||  |||| ||| ||| ||||| ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| || ||    
T  45157311 aaggctaaagtgcactttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccctttaagatttaacccct 45157212  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     |||||||||| || |||| ||||||||||||    
T  45157211 ttgcatctttggtccttttggtcaattttgac 45157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 51685863 - 51685725
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||  |||||| |||||||||| ||||||||| |||||||||||||| ||||||||||| ||  |||||||||||| || |||    
T  51685863 taaagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgaccccctaagatttagcccctttgc 51685764  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
    ||||||| || |||| | ||||||| || || |||||||    
T  51685763 atctttggtccttttggccaattttaaccaattcaacgc 51685725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 326
Target Start/End: Original strand, 43058785 - 43058915
Alignment:
Q  198 aggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctc 295  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||| | ||| |||||||||||| ||     
T  43058785 aggttaaagtacactttttccccctaactttgaaaaacttgcaattttgaccccctaagtacaaaaactacaattttagccctctaagatttagcccctt 43058884  T
Q  296 tgcatctttgatctttttagtcaattttgac 326  Q
    | ||||||||||| |||| ||||||||||||    
T  43058885 tacatctttgatccttttggtcaattttgac 43058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 366
Target Start/End: Original strand, 43377748 - 43377890
Alignment:
Q  225 ttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaatttt 323  Q
    ||||||| | |||||||||| | | | || ||| |||||||| ||||||| |||  ||| |||||| |||| | || |||||||| |||| |||||||||    
T  43377748 ttttaaacacttgcaattttagtcctttaagtataaaaattataattttggcctcctaaaatttagtctctttacacctttgatccttttggtcaatttt 43377847  T
Q  324 gacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||| ||||||||||||||||||||||||| |||||||||||||    
T  43377848 gaccaagtcaacgcatgtgtggcatgccacgtgtgtaaataat 43377890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 36614002 - 36613832
Alignment:
Q  202 taaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    ||||||||| ||||  |||||||||||||||||| ||| ||||||||||  ||| ||||||||| ||||||||||| ||  ||||||||||||||| |||    
T  36614002 taaagtgcatttttcctcccctaacttttaaaaacttgtaattttggccccctaagtacaaaaactacaattttgaccccctaagatttagcctctttgc 36613903  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    | ||||  || ||||  |||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  36613902 aactttagtccttttgatcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 36613832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 45156051 - 45156179
Alignment:
Q  201 ttaaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctg 297  Q
    ||||||| |||||||  |||| ||| ||| ||||| || |||||||| ||||||||||||||||| ||||||||| | ||| ||||||||| ||||| ||    
T  45156051 ttaaagttcacttttcctcccttaagtttcaaaaacttacaattttgaccttctatgtacaaaaactacaattttaaccctctaagatttaacctctttg 45156150  T
Q  298 catctttgatctttttagtcaattttgac 326  Q
     ||||||| ||||||| ||||||||||||    
T  45156151 tatctttggtctttttggtcaattttgac 45156179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 46066530 - 46066663
Alignment:
Q  204 aagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcatctt 303  Q
    |||||||||||| | ||||||||| |||||||||| ||||| |||   |||||||||||| |||||||||  ||  ||||||||||||  | |||||||     
T  46066530 aagtgcacttttcctcctaactttcaaaaagttgcgattttagccccttatgtacaaaaactacaattttagcccctaagatttagccaatttgcatctc 46066629  T
Q  304 tgatctttttagtcaattttgacaaagtcaacgc 337  Q
    ||||||||||  ||||||||||| || |||||||    
T  46066630 tgatctttttgatcaattttgaccaactcaacgc 46066663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 11436040 - 11436215
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctc 293  Q
    |||| |||||||||||||| |||||  |||||| ||||| |||||||||||||||| || ||| ||||| ||||||||| | ||  ||||||||| ||      
T  11436040 aaggctaaagtgcacttttccccctttaactttcaaaaacttgcaattttggccttttaagtataaaaactacaattttggccccctaagatttaaccca 11436139  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    | |||||||||| |  |||| ||||||||||||  ||||||||| |  |||||||||||  ||||||| |||||||    
T  11436140 tttgcatctttggttcttttggtcaattttgaccgagtcaacgcctaagtggcatgccacatgtgtaattaattaa 11436215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 35594215 - 35594380
Alignment:
Q  197 aaggttaaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctct 294  Q
    |||| |||||||||||||| |  |||||||||| ||||| ||||||||||| ||  ||| |||  |||| |||||||||||||  ||| |||||||| ||    
T  35594215 aaggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccc-ctaagtattaaaactacaattttgacccctaaaatttagcccct 35594313  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     |||||||||| || |||||| ||||||||||   |||||||| | | |||||||||| ||||||||    
T  35594314 ttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaa 35594380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 366
Target Start/End: Complemental strand, 24426178 - 24426007
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctc 293  Q
    ||||||||||||||||||  |||||  |||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||| | ||  |||||||||||| |    
T  24426178 aaggttaaagtgcactttcccccctctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttagtcccctaagatttagcccc 24426079  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
      ||||  ||||||  |||| ||||||||||||  ||||||||| ||  |||||||||| | |||||||||||    
T  24426078 attgcaaatttgatacttttggtcaattttgacctagtcaacgcttgcatggcatgcca-gcgtgtaaataat 24426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 30249567 - 30249450
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttagtcaa 319  Q
    ||||||| ||||||||| |||||||  ||| |||||||||||| ||||||||||| || ||||||||||||   | || |||||||||||||||  ||||    
T  30249567 taactttcaaaaagttgtaattttgatcttttatgtacaaaaactacaattttgaccccttaagatttagctcatttgtatctttgatctttttgatcaa 30249468  T
Q  320 ttttgacaaagtcaacgc 337  Q
    |||||||  |||||||||    
T  30249467 ttttgacttagtcaacgc 30249450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 40384724 - 40384855
Alignment:
Q  199 ggttaaagtgcactttttcccc---taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||||||||||||||||| ||    ||| ||| |||||||||||||||| | || ||||||||||||| ||||||||||| ||  ||| |||||||||||    
T  40384724 ggttaaagtgcacttttttcctctttaattttcaaaaagttgcaattttagtctcctatgtacaaaaactacaattttgatcccctaaaatttagcctct 40384823  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     |||||||||| || |||| | ||||||||||    
T  40384824 ttgcatctttggtccttttggccaattttgac 40384855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 326
Target Start/End: Complemental strand, 45150072 - 45149941
Alignment:
Q  198 aggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg--acctttaagatttagcctct 294  Q
    |||||||||||||||||| |||| ||||||| ||||| ||||||||||||||   || |||||||||  |||||||||   ||  |||||||||||| ||    
T  45150072 aggttaaagtgcacttttcccccctaactttcaaaaacttgcaattttggccccttaagtacaaaaacaacaattttgccccccctaagatttagcccct 45149973  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     ||||||||||||| |||| | ||||||||||    
T  45149972 ttgcatctttgatccttttggccaattttgac 45149941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 357
Target Start/End: Complemental strand, 11437297 - 11437139
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||||||||  ||||||| ||||| |||||||||||| |   || ||||||||| |||||||||| ||   ||||||||| ||  | | |    
T  11437297 taaagtgcactttttcccccttaactttcaaaaacttgcaattttggtcccttaagtacaaaaactacaattttggccccctaagatttaacccttttac 11437198  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgt 357  Q
    |||||||||| |||| ||||||||||||  ||||||||| |  ||||||||||| ||||    
T  11437197 atctttgatccttttggtcaattttgaccgagtcaacgcttaagtggcatgccacgtgt 11437139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 50680331 - 50680504
Alignment:
Q  198 aggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctc 295  Q
    ||||||||||||| |||| ||||| |||||  ||||| ||||||||||||||  ||| ||| ||||| || |||||| | ||  ||||||||| || ||     
T  50680331 aggttaaagtgcatttttcccccttaacttccaaaaacttgcaattttggccccctaagtataaaaactataattttagtcccctaagatttaacccctt 50680430  T
Q  296 tgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||||||||| |||| ||||||||||||  | ||||||| |  || ||| |||| |||||||| |||||||    
T  50680431 tgcatctttgatccttttggtcaattttgacttattcaacgcctacgtagcaggccacgtgtgtaattaattaa 50680504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 35595291 - 35595128
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagtt-gcaattttggccttctatgtacaaaaatta-caattttgacctttaagatttagcctctctg 297  Q
    ||||||| |||||| |||||  |||||| ||||| || ||||||||| ||  ||||||| ||||| || |||||||| ||  |||||||||||| || ||    
T  35595291 taaagtgtacttttccccctctaactttaaaaaacttagcaattttgaccccctatgtataaaaactaacaattttggcccctaagatttagcccctttg 35595192  T
Q  298 catctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    |||||||| || |||| |||||||||||| ||||||| ||   | |||||||||| ||||||||    
T  35595191 catctttggtccttttggtcaattttgaccaagtcaatgctgatttggcatgccacgtgtgtaa 35595128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 39698561 - 39698692
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctct 294  Q
    |||| |||||||||||||  ||||  ||||||||||||| || |||||||||||  ||| ||||| ||| || ||||||| ||  ||||||||||||||     
T  39698561 aaggctaaagtgcactttaccccccttaacttttaaaaactttcaattttggccccctaagtacagaaactataattttggccactaagatttagcctcg 39698660  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     |||| |||| ||| |||| ||||||||||||    
T  39698661 ttgcaactttaatccttttggtcaattttgac 39698692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 369
Target Start/End: Complemental strand, 37526980 - 37526806
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctct 294  Q
    |||||||||||| |||||| ||||  ||||||| ||||| |||||||||||||   |||  || | |||  ||||||||| ||  |||||||||||| ||    
T  37526980 aaggttaaagtgtacttttccccccttaactttcaaaaacttgcaattttggctccctaaatatagaaaccacaattttggcccctaagatttagcccct 37526881  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
     |||||||||| |||||||  |||||||||||  | ||||||| |  |||| | |||| |||||||| |||||||    
T  37526880 ttgcatctttggtctttttgatcaattttgacttattcaacgcctacgtggtaggccacgtgtgtaattaattaa 37526806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 31194058 - 31194183
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcat 300  Q
    ||||| ||||||||  ||||||||||||||||||| | | |||||||    ||||||||||| || |||||| | ||||||||||||||||| | |||||    
T  31194058 taaagggcacttttcaccctaacttttaaaaagttacgaatttggccccacatgtacaaaaactaaaattttggccctttaagatttagcctttttgcat 31194157  T
Q  301 ctttgatctttttagtcaattttgac 326  Q
    ||||| || |||| | ||||| ||||    
T  31194158 ctttggtcctttttgccaattctgac 31194183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 39222572 - 39222401
Alignment:
Q  202 taaagtgcactttttcccc---taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaat-tttgacctttaagatttagcctctctg 297  Q
    |||||||||||||| ||||   ||||||| ||||| ||||||||||||||  ||| ||| ||||| |||||| || | ||| |||||||| |||  | ||    
T  39222572 taaagtgcacttttaccccctttaactttcaaaaacttgcaattttggccccctaagtataaaaactacaatgttagccctctaagattttgcccatttg 39222473  T
Q  298 catctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||| ||||||| | ||||||||||  | ||||||| |  |||||||| || |||| ||| |||||||    
T  39222472 catctttggtctttttgggcaattttgacttattcaacgcctacgtggcatgacacgtgtataattaattaa 39222401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 366
Target Start/End: Original strand, 14999304 - 14999450
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||||| ||| |   |||||||   |||||| |||||||| |||| |    
T  14999304 cccctaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatcctct---atttagctcatctgcaactttgatcctttttg 14999400  T
Q  316 tcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |||||||||||   ||||| || |  |||||||||||||||||||| ||||    
T  14999401 tcaattttgac-cggtcaatgcctacgtggcatgccatgtgtgtaactaat 14999450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 52276265 - 52276094
Alignment:
Q  198 aggttaaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctct 294  Q
    |||||||||||||||||  |||  |||||||| ||||| ||| ||||||||||  ||| ||||||||| || || ||| | ||  |||||||||||| |     
T  52276265 aggttaaagtgcactttcccccttctaactttcaaaaatttgtaattttggccccctaagtacaaaaactataaatttagtcccctaagatttagcccca 52276166  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
     ||||  ||||||| ||||  |||||||||||  ||||||||| ||  |||||||||| | |||||||||||    
T  52276165 ttgcaaatttgatccttttgatcaattttgacctagtcaacgcttgcatggcatgccacgcgtgtaaataat 52276094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 7675536 - 7675451
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttg 305  Q
    ||||||| ||||| ||||||||||| ||| ||| ||| |||||||| |||||||| ||  |||||||||||| || ||||||||||    
T  7675536 taactttcaaaaacttgcaattttgccctcctaagtaaaaaaattataattttgaccccctaagatttagcccctttgcatctttg 7675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 39221402 - 39221487
Alignment:
Q  284 atttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||| || |||||||||| || |||| |||||||||||| || ||||||| |  |||||| |||| |||||||| |||||||    
T  39221402 atttagcccctttgcatctttggtccttttggtcaattttgactaattcaacgcctacgtggcaggccacgtgtgtaattaattaa 39221487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 45148584 - 45148710
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctctctgc 298  Q
    ||||||||||||||||||   ||||||| ||||| ||||||||||||||  ||| ||| ||||| ||||||||||  ||  ||||||||| || || |||    
T  45148584 taaagtgcactttttcccgcttaactttcaaaaacttgcaattttggccccctaagta-aaaaactacaattttgcccccctaagatttaacccctttgc 45148682  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    ||||||| || |||| | ||||||||||    
T  45148683 atctttggtccttttggccaattttgac 45148710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 7674547 - 7674605
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac 276  Q
    ||||||||||||||||| |||||||||||| |  ||| ||||||||| ||||||||||||    
T  7674547 cccctaacttttaaaaacttgcaattttgggc-cctaagtacaaaaactacaattttgac 7674605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 41364832 - 41364879
Alignment:
Q  202 taaagtgcactttt-tcccctaacttttaaaaagttgcaattttggcc 248  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  41364832 taaagtgcacttttctcccctaactttcaaaaacttgcaattttggcc 41364879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 43060084 - 43059977
Alignment:
Q  220 ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttagtca 318  Q
    |||||||| ||||| ||| ||||||| ||   || ||||||||| ||||||||||| || ||||||||||||   | |||||||||| || |||| ||||    
T  43060084 ctaactttcaaaaatttgaaattttgaccccttaagtacaaaaactacaattttgaccccttaagatttagctcatttgcatctttggtccttttggtca 43059985  T
Q  319 attttgac 326  Q
    ||||||||    
T  43059984 attttgac 43059977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 39699864 - 39699738
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgca 299  Q
    |||||||||||||| |||| ||||||| || || ||||||||||| ||  ||| ||||| ||| ||||||||| | ||  |||||||||||| |  ||||    
T  39699864 taaagtgcacttttcccccctaactttcaataacttgcaattttgaccccctaagtacagaaactacaattttggccccctaagatttagccccattgca 39699765  T
Q  300 tctttgatctttttagtcaattttgac 326  Q
     |||| ||| |||| ||||||||||||    
T  39699764 actttaatccttttggtcaattttgac 39699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 7983049 - 7983126
Alignment:
Q  198 aggttaaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||| |||| ||||||| || || ||||||||||||||  |||||||  ||||  |||||||||    
T  7983049 aggttaaagtgcacttttctcccgtaactttcaacaacttgcaattttggccccctatgtatcaaaaccacaattttg 7983126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 30248168 - 30248241
Alignment:
Q  253 atgtacaaaaattacaattttgacctttaagatttagcctctctgcatctttgatctttttagtcaattttgac 326  Q
    ||||||||||| |||||||||  ||| ||||||||| |  || ||||||||||||| |||| | ||||||||||    
T  30248168 atgtacaaaaactacaattttaccctctaagatttaactcctttgcatctttgatcattttggccaattttgac 30248241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 46525817 - 46525737
Alignment:
Q  280 taagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    |||||||||||| || ||||  | |||||||||  |||||||||||| |||||||||| | | |||||||||| ||||||||    
T  46525817 taagatttagcccctttgcaattgtgatcttttg-gtcaattttgaccaagtcaacgcttatttggcatgccacgtgtgtaa 46525737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 8456481 - 8456647
Alignment:
Q  202 taaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgca 299  Q
    ||||||||||||||||||| ||| ||| ||||| |||||||||||| |  |||  |||||||| |||||||||| ||   ||||||||||||||  ||||    
T  8456481 taaagtgcactttttccccctaattttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggccccctaagatttagcctcattgca 8456580  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
      ||||||| |||||||||||||||||  ||||||||| || ||||||||||| |||||||||||||    
T  8456581 aatttgatccttttagtcaattttgacctagtcaacgcctgcgtggcatgccacgtgtgtaaataat 8456647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 23769881 - 23770026
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcatctttgatctttttagtcaat 320  Q
    ||||||| || |||||||||||||   | ||||||| |||||| |||||||||||||  |||||||| ||   | |||||||||| || |||| ||||||    
T  23769881 taactttcaacaagttgcaattttaatcctctatgtgcaaaaactacaattttgacccctaagatttcgctcatttgcatctttggtccttttggtcaat 23769980  T
Q  321 tttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |||||| ||||||||| |||||||||||||||  ||||||||||||    
T  23769981 tttgaccaagtcaacgtatgtgtggcatgccacatgtgtaaataat 23770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 12700178 - 12700346
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcat 300  Q
    |||||||||||||  ||||||||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||||| ||  || ||||||||| |  |||||    
T  12700178 taaagtgcactttcccccctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttgaccccctatgatttagccacattgcat 12700277  T
Q  301 ctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  12700278 ctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 12700346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 19984852 - 19984979
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||| ||| ||||| ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| || || |||    
T  19984852 taaagtgcacttttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaaactacaattttgaccctttaagatttaacccctttgc 19984951  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    ||||||| || |||| ||||||||||||    
T  19984952 atctttggtccttttggtcaattttgac 19984979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 54987108 - 54986978
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctc 295  Q
    ||||||||||||||||||| ||||||| ||| |||||||||| ||||| | |  ||||||| ||||| || |||||||| ||| |||||||||||  ||     
T  54987108 aaggttaaagtgcacttttccccctaagtttcaaaaagttgcgattttagtcccctatgtataaaaactataattttgaccctctaagatttagctcctt 54987009  T
Q  296 tgcatctttgatctttttagtcaattttgac 326  Q
    ||||||||||||| |||| | ||||||||||    
T  54987008 tgcatctttgatcattttggccaattttgac 54986978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 365
Target Start/End: Complemental strand, 23770508 - 23770339
Alignment:
Q  199 ggttaaagtgcactttt-tcccctaacttttaaaaa-gttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctc 295  Q
    |||||||||||| |||| |||||| | ||||||||| ||| ||||||||| |   |||||||||||| ||||||||| | ||  ||||||||| || ||     
T  23770508 ggttaaagtgcaattttctccccttaattttaaaaaagttacaattttggtcccttatgtacaaaaactacaattttagccccctaagatttaacccctt 23770409  T
Q  296 tgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataa 365  Q
    |||||||||  || |||| ||||| |||||| |||||||||||| |||||||||||| ||||| ||||||    
T  23770408 tgcatctttagtccttttggtcaactttgaccaagtcaacgcatatgtggcatgccacgtgtgcaaataa 23770339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 337
Target Start/End: Complemental strand, 46721323 - 46721180
Alignment:
Q  197 aaggttaaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctc 293  Q
    |||| ||||||||||||||   |||||||||||||||||||||| |||||  ||  ||||||||||||| ||||||||| | ||  |||||||||||| |    
T  46721323 aaggctaaagtgcacttttctccccctaacttttaaaaagttgcgattttaaccccctatgtacaaaaactacaattttagtcccctaagatttagcccc 46721224  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
    | ||||| |||| || || | |||||||||||| ||||||||||    
T  46721223 tttgcatatttggtccttctggtcaattttgaccaagtcaacgc 46721180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 7758405 - 7758563
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||||||||  ||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||| | ||  ||||||||| || || ||     
T  7758405 taaagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaatttttgccccctaagatttaacccctttgt 7758504  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgt 357  Q
    ||||||| || |||| ||||||||||||  ||||||||| |  ||||||||||| ||||    
T  7758505 atctttggtccttttggtcaattttgacctagtcaacgcttaagtggcatgccacgtgt 7758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 337
Target Start/End: Original strand, 46719944 - 46720082
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    ||||||||| |||| ||||  |||||||||||||||||| |||||||||  ||||||| ||||| ||||||||| | ||| ||||||||||||  | |||    
T  46719944 taaagtgcatttttccccccttaacttttaaaaagttgcgattttggccccctatgtataaaaactacaattttagtcctctaagatttagcccatttgc 46720043  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
    || |||| || |||| |||||||||||  ||||||||||    
T  46720044 atatttggtccttttggtcaattttgatcaagtcaacgc 46720082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 326
Target Start/End: Original strand, 7267643 - 7267773
Alignment:
Q  198 aggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctc 295  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||||||  ||| ||||| ||| ||||||||| | ||  ||||||||||||||      
T  7267643 aggttaaagtgcacttttcccccttaactttcaaaaacttgcaattttggccccctaagtacagaaactacaattttggccccctaagatttagcctcat 7267742  T
Q  296 tgcatctttgatctttttagtcaattttgac 326  Q
    |||| |||| ||| |||| ||||||||||||    
T  7267743 tgcaactttaatccttttggtcaattttgac 7267773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 534502 - 534634
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    ||||||||||||||||||||  |||| | ||||| ||||||||||| ||| ||||||||||||| ||||||||| | ||  ||||||||||||| | |||    
T  534502 taaagtgcactttttcccctctaactctcaaaaacttgcaattttgacctcctatgtacaaaaactacaattttggccccctaagatttagcctatttgc 534601  T
Q  299 atctttgatctttttagtcaattttgacaaagt 331  Q
    ||||||| ||  ||| | |||||||||| ||||    
T  534602 atctttggtccatttggccaattttgactaagt 534634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 47614188 - 47614358
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    ||||||||||||||||||||  |||||| ||||| ||||||||||||||  ||| |||  ||||  |||||||| | ||  ||||||||||||||| |||    
T  47614188 taaagtgcactttttcccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcctctttgc 47614287  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| |  |||| || |||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  47614288 atctttggtgcttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 47614358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 54540893 - 54540761
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctc 293  Q
    |||| |||||||||||||| ||||  ||||||| ||||| ||||||||||| ||   || ||||||||| |||||||||| ||   |||||||||||| |    
T  54540893 aaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttggccccctaagatttagcccc 54540794  T
Q  294 tctgcatctttgatctttttagtcaattttgac 326  Q
    | |||| |||||||| |||| ||||||||||||    
T  54540793 tttgcaactttgatcctttttgtcaattttgac 54540761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 51037539 - 51037611
Alignment:
Q  202 taaagtgcactttt-tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||| || |||||| ||||||| |||||||||    
T  51037539 taaagtgcacttttctcccttaactttcaaaaagttgcaattttgaccctctatgaacaaaaactacaatttt 51037611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 22776910 - 22776836
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| |  |||||||||| | ||||||||||||||||||  ||||||||||||| ||||||||||    
T  22776910 taaagtgcacttttccacccctaactttcagaaagttgcaattttggccccctatgtacaaaaactacaattttg 22776836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 49398125 - 49398220
Alignment:
Q  197 aaggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagc 290  Q
    ||||||||||||||||||| ||||| || ||||||||| ||   |||||||  ||||||| |||||||||||||||||| ||| ||||||||||||    
T  49398125 aaggttaaagtgcacttttcccccttaagttttaaaaaattattattttggtgttctatgaacaaaaattacaattttggcctcttaagatttagc 49398220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 51347267 - 51347433
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||||||||||||||||  |||   ||| ||| |||||||||||||||||| | |||||| |||||||| |||||||||| ||  ||||||||| ||  |    
T  51347267 aggttaaagtgcactttccccctcttaagtttgaaaaagttgcaattttggtcctctatgaacaaaaatgacaattttgaccccctaagatttaacccgt 51347366  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     |||| |||||||| ||||  ||||| |||||  |||||||||||  |||||| || | ||||||||    
T  51347367 ttgcaactttgatcattttgatcaatgttgacctagtcaacgcatacgtggcaggctacgtgtgtaa 51347433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 12703602 - 12703524
Alignment:
Q  197 aaggttaaagtgcactttttccc-ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||  ||| ||||||||| ||||||||||    
T  12703602 aaggctaaagtgcactttttccctctaactttcaaaaatttgtaattttggccccctaagtacaaaaactacaattttg 12703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 19986170 - 19986007
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggcc--ttctatgtacaaaaattacaattttgacctt-taagatttagcctctct 296  Q
    |||||||||||||| |||   ||| ||| ||||| ||||||||||||||  | ||||||| ||||| ||||||||||||| | ||||||||| || || |    
T  19986170 taaagtgcacttttcccctcttaagtttcaaaaacttgcaattttggcccctcctatgtataaaaactacaattttgaccctctaagatttaaccccttt 19986071  T
Q  297 gcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||||| || |||  ||||||||||||  |||||| || |  ||||||||||| ||||||||    
T  19986070 gcatctttggtcatttcggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtgtaa 19986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 52104479 - 52104554
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| ||||||||  | ||||||||||||| || |||||||    
T  52104479 aaggttaaaatgcacttttccccctaactttcaaaaagttgtaattttgg--tcctatgtacaaaaactataattttg 52104554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 7268928 - 7268851
Alignment:
Q  198 aggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| ||| ||| | ||| ||||||||||    
T  7268928 aggttaaagtgcacttttcccccctaactttcaaaaacttgcaattttggcctcctaagtatagaaactacaattttg 7268851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 40426877 - 40426709
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaatttt-ggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctg 297  Q
    |||||||||||||| ||||  ||||||| |||||||||||| ||| ||||   ||| |||||||||||||||||| | ||  || ||||||||  || ||    
T  40426877 taaagtgcacttttccccccttaactttaaaaaagttgcaaatttcggccccttatatacaaaaattacaattttggccccctatgatttagctcctttg 40426778  T
Q  298 catctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
      |||||| || |||| || ||||||||| |||||||||||| ||||||||| ||  |||| |||||||    
T  40426777 tgtctttggtccttttggttaattttgaccaagtcaacgcatatgtggcatgtcacatgtgcaaataat 40426709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 29931229 - 29931396
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| |  |||||||||| ||||| |||||||||| |||  |||  |||||||| |||||||||| ||   ||||||||| || || |||    
T  29931229 taaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttggccccctaagatttaacccctttgc 29931328  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |    |  || |||| ||||||||||||| ||||||||| ||| |||||| ||| |||||||||||||    
T  29931329 aataatagtccttttggtcaattttgacacagtcaacgcctgtatggcattccacgtgtgtaaataat 29931396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 29932801 - 29932707
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttag 289  Q
    |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||||| || |||||||||||    
T  29932801 aaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggcc-cctaagtacaaaaactacaattttgaccccttaagatttag 29932707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 29980383 - 29980550
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| |  |||||||||| ||||| |||||||||| |||  |||  |||||||| |||||||||| ||   ||||||||| || || |||    
T  29980383 taaagtgcacttttccacccctaactttcaaaaacttgcaatttttgccccctaaatacaaaaactacaattttggccccctaagatttaacccctttgc 29980482  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |    |  || |||| ||||||||||||| ||||||||| ||| |||||| ||| |||||||||||||    
T  29980483 aataatagtccttttggtcaattttgacacagtcaacgcctgtatggcattccacgtgtgtaaataat 29980550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 29981955 - 29981861
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttag 289  Q
    |||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||||| || |||||||||||    
T  29981955 aaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggcc-cctaagtacaaaaactacaattttgaccccttaagatttag 29981861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 46493055 - 46492967
Alignment:
Q  259 aaaaattacaattttgacctttaagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggca 347  Q
    |||||| |||||||| |||  |||| ||||||| | ||||| |||||||| |||| ||||||||||||  |||||||||||| ||||||    
T  46493055 aaaaatgacaattttaacccctaagttttagcccccctgcaactttgatccttttggtcaattttgacctagtcaacgcatgcgtggca 46492967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 49216269 - 49216377
Alignment:
Q  219 cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctctctgcatctttgatctttttagtc 317  Q
    ||||| ||| ||||||||||||||||| ||  ||||||||||||| ||||||| ||  || ||||||||||||   | ||||||||||||| |||| | |    
T  49216269 cctaagtttcaaaaagttgcaattttgaccccctatgtacaaaaactacaattatgtccccttaagatttagctcatttgcatctttgatcattttggcc 49216368  T
Q  318 aattttgac 326  Q
    |||||||||    
T  49216369 aattttgac 49216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 34940286 - 34940211
Alignment:
Q  200 gttaaagtgcactttttccc-ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||   ||  |||||| ||||||||||||||||    
T  34940286 gttaaagtgcactttttccctctaatttttaaaaacttgcaattttaatctcttatgtataaaaattacaattttg 34940211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 51038888 - 51038814
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| | ||  ||||||||||||||||||||||||| ||  ||||| ||||||| ||||||||||    
T  51038888 taaagtgcacttttccacccttaacttttaaaaagttgcaattttgaccccctatgaacaaaaactacaattttg 51038814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 55192072 - 55192019
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||| ||||| |||||||||||||| |||| ||||||||| ||||||||||    
T  55192072 taactttcaaaaacttgcaattttggccctctaagtacaaaaactacaattttg 55192019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 54654375 - 54654331
Alignment:
Q  229 aaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||    
T  54654375 aaaaagttataattttggtcttctatgtacaaaaattacaatttt 54654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 24516464 - 24516554
Alignment:
Q  203 aaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagc 290  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||||   ||| ||| ||||| ||||||||| | || ||||||||||||    
T  24516464 aaagtgcactttttcccccctaactttaaaaaacttgcaattttggcaccctaagtataaaaactacaattttggccccttaagatttagc 24516554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 53901484 - 53901441
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttg 245  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||    
T  53901484 taaagtgcacttttccccctaagtttaaaaaagttgcaattttg 53901441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 8875938 - 8876036
Alignment:
Q  229 aaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagtcaattttgac 326  Q
    |||||| ||||||||| |||   |||||||||||| |||||||||| ||   ||||||||||||  | ||||| |||| || |||||||||||||||||    
T  8875938 aaaaagctgcaattttagccccttatgtacaaaaactacaattttggccccctaagatttagccaatttgcatatttggtccttttagtcaattttgac 8876036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 39844299 - 39844251
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaatttt 244  Q
    |||||||||||||| ||||||||  ||| ||||||||||||||||||||    
T  39844299 aggttaaagtgcaccttttcccccttaagttttaaaaagttgcaatttt 39844251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 47610682 - 47610630
Alignment:
Q  198 aggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggcc 248  Q
    |||||||||||||||||| |||||  |||||| ||||| ||||||||||||||    
T  47610682 aggttaaagtgcacttttccccctctaactttcaaaaacttgcaattttggcc 47610630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 47615594 - 47615505
Alignment:
Q  280 taagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||||||| || |||||||||| || |||| ||||||||||||  | |||| || |  |||||| |||| |||||||| |||||||    
T  47615594 taagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtgtaattaattaa 47615505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 54539753 - 54539924
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    |||| |||||||||||||| | ||  ||||||| ||||| ||||||||||  ||  |||  |||||||| ||||||||||| ||  |||||||||||       
T  54539753 aaggctaaagtgcacttttccacccttaactttcaaaaacttgcaattttaaccccctaaatacaaaaactacaattttgatcccctaagatttagctca 54539852  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    | |||| |||||||| |||| | ||||||||||   ||||| ||||  ||||||||||| |||||||| ||||    
T  54539853 tttgcaactttgatcctttttgccaattttgactg-gtcaaagcatacgtggcatgccacgtgtgtaattaat 54539924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 39843051 - 39843098
Alignment:
Q  199 ggttaaagtgcactttttcccc--taacttttaaaaagttgcaatttt 244  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||||||||    
T  39843051 ggttaaagtgcactttttcccccttaagtttgaaaaagttgcaatttt 39843098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 26545619 - 26545452
Alignment:
Q  202 taaagtgcactttttcc--cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||||||  | | ||||| ||||| ||||||||||| ||   ||  ||||||||||| |||||||||| | |||||||||||| || |||    
T  26545619 taaagtgcactttttccttcatgactttcaaaaatttgcaattttgaccccttaaatacaaaaattataattttgaccctctaagatttagcccctttgc 26545520  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||| || ||||  ||||||||||| || ||||||||| |||||||||||| |||||||||||||    
T  26545519 atctttggtcattttgatcaattttgaccaaatcaacgcatatgtggcatgccacgtgtgtaaataat 26545452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 13030295 - 13030462
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaa-ttttgacctttaagatttagcctctctgcat 300  Q
    |||||||||||||| ||||||||||| ||||| ||| ||||||||||  ||| ||||||||||||||| ||||| ||  |||||||||||   | |||||    
T  13030295 taaagtgcacttttccccctaactttcaaaaacttgtaattttggcc-cctaagtacaaaaattacaatttttgccccctaagatttagctcttttgcat 13030393  T
Q  301 ctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||| || |||| ||||||||||||  | ||||||| |  |||||| ||||  ||||||| |||||||    
T  13030394 ctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggccacatgtgtaattaattaa 13030462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 366
Target Start/End: Original strand, 11257620 - 11257791
Alignment:
Q  197 aaggttaaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctc 293  Q
    |||| ||||||||||||||  ||| |||||||| ||||| ||||||||||   |  ||| ||| ||||| |||||||||| |||  |||||||||||| |    
T  11257620 aaggctaaagtgcacttttactcctctaactttcaaaaacttgcaattttaaacc-ctaagtataaaaactacaattttggcctcctaagatttagcccc 11257718  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
      ||||  ||||||| ||||  |||||||||||| ||||||||| || ||||||||||| |||||||||||||    
T  11257719 attgcaaatttgatccttttgatcaattttgacatagtcaacgcctgcgtggcatgccacgtgtgtaaataat 11257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 360
Target Start/End: Complemental strand, 22588056 - 22587892
Alignment:
Q  197 aaggttaaagtgcactttttcccct---aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcct 292  Q
    |||| ||||||||| ||||||||||   |||||| ||||| ||||||||||||||  ||||||||||||| |||||||||| ||  |||||||||||||     
T  22588056 aaggctaaagtgca-tttttcccctcataactttcaaaaacttgcaattttggccc-ctatgtacaaaaactacaattttggccccttaagatttagccc 22587959  T
Q  293 ctctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgta 360  Q
    || |||||||||| || |||| | |||||| |||  ||||||||  | |||||||||||| |||||||    
T  22587958 ctttgcatctttggtccttttggccaatttcgac-cagtcaacgtctatgtggcatgccacgtgtgta 22587892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 18300820 - 18300688
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcatc 301  Q
    |||| ||||||||| ||||||||||| | ||| ||||||||||| ||  ||| ||||||||| |||||||||||||  ||  |||||||| || ||||||    
T  18300820 taaattgcacttttccccctaactttcataaacttgcaattttgaccccctaagtacaaaaactacaattttgacccctataatttagcccctttgcatc 18300721  T
Q  302 tttgatctttttagtcaattttgacaaagtcaa 334  Q
    |||| || |||| | |||||||||  |||||||    
T  18300720 tttggtccttttggacaattttgatcaagtcaa 18300688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 369
Target Start/End: Complemental strand, 18869242 - 18869090
Alignment:
Q  220 ctaacttttaaaaagttg-caattttggccttctatgtacaaaaattacaattttga-cctttaagatttag-cctctctgcatctttgatctttttagt 316  Q
    |||||||| ||||| ||| |||||||||||||||| ||||||||| ||||||||| | ||  |||||||||| ||  | |||||||||| |||||||  |    
T  18869242 ctaactttcaaaaatttggcaattttggccttctaagtacaaaaactacaatttttatcccctaagatttagcccattttgcatctttggtctttttgat 18869143  T
Q  317 caattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||||||  | ||||||| | ||||||| |||| |||||||| |||||||    
T  18869142 caattttgacttattcaacgcctatgtggcaggccacgtgtgtaattaattaa 18869090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 26544152 - 26544318
Alignment:
Q  202 taaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    ||||||||||||||   ||||||| ||||||||| || |||||||||  | ||| ||||||||| |||| ||||  |||  |||||||||||  || |||    
T  26544152 taaagtgcacttttctacccctaatttttaaaaatttacaattttggt-tcctaagtacaaaaactacagttttagcctcctaagatttagcacctttgc 26544250  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    || |||| || ||||  ||||||||||| |||||||||||| |||||||||||  |||||||||||||    
T  26544251 atatttggtccttttgatcaattttgaccaagtcaacgcatatgtggcatgccgcgtgtgtaaataat 26544318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 11258889 - 11258742
Alignment:
Q  220 ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtca 318  Q
    |||||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||| | ||  |||||||||||| |  ||||  ||||||| |||| ||||    
T  11258889 ctaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttagtcccctaagatttagccccattgcagatttgatccttttggtca 11258790  T
Q  319 attttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    ||||||||  ||||||||| ||  |||||||||| | ||| |||||||    
T  11258789 attttgacctagtcaacgcttgcatggcatgccacgcgtgcaaataat 11258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 18906085 - 18905916
Alignment:
Q  202 taaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgca 299  Q
    |||||||||||||| |||  |||||||| ||||| |||||||||| |||  ||| ||||||||| |||||||||  ||  |||||||||||   | ||||    
T  18906085 taaagtgcacttttccccttctaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttagcccctaagatttagctcatttgca 18905986  T
Q  300 tctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||| |||||||  |||||||||||  | ||||||| |  ||||||  ||| |||||||| |||||||    
T  18905985 tctttggtctttttgatcaattttgacttattcaacgcctacgtggcagaccacgtgtgtaattaattaa 18905916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 22848189 - 22848364
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac-ctttaagatttagcctc 293  Q
    |||| |||||||||||||| ||||  ||||||| ||||| |||||||||||| |  |||  |||||||| |||||||||| | |  |||||||||||| |    
T  22848189 aaggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttggtcccctaaatacaaaaactacaattttggctccctaagatttagcccc 22848288  T
Q  294 tctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    | |||| ||||| || ||||  |||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  22848289 tttgcagctttggtccttttgatcaattttgacttattcaacgcctacgtggcaagccacgtgtgtaattaattaa 22848364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 24476937 - 24476865
Alignment:
Q  205 agtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc 277  Q
    |||||||||||||||| |||||||||||| ||| |||||||| |  ||| ||||||||| |||||||||||||    
T  24476937 agtgcactttttcccccaacttttaaaaacttgtaattttggtcccctaagtacaaaaactacaattttgacc 24476865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 21837356 - 21837305
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggcc 248  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  21837356 aaggctaaagtgcactttttcccctaactttcaaaaacttgcaattttggcc 21837305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 32739638 - 32739700
Alignment:
Q  212 tttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||| ||||| ||||||||||||||   |||||||||||| ||||||||||    
T  32739638 tttttcccctaactttcaaaaacttgcaattttggccccttatgtacaaaaactacaattttg 32739700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 337
Target Start/End: Original strand, 11996739 - 11996848
Alignment:
Q  229 aaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtcaattttgaca 327  Q
    |||||||||| |||||| ||  ||||||||||||| ||||||||| |  || ||||||||| || || | |||||||| || |||| ||||||||||||     
T  11996739 aaaaagttgcgattttgaccccctatgtacaaaaactacaattttagttctctaagatttaacccctttacatctttggtccttttggtcaattttgacc 11996838  T
Q  328 aagtcaacgc 337  Q
    ||||||||||    
T  11996839 aagtcaacgc 11996848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 361
Target Start/End: Original strand, 18797267 - 18797412
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||| ||||||||||| ||   || |||  |||| ||||||||||| ||  ||| |||||||| || |||||||||| || ||||||    
T  18797267 cccctaactttcaaaaacttgcaattttgaccccttaagtattaaaactacaattttgaccccctaaaatttagcccctttgcatctttggtccttttag 18797366  T
Q  316 tcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     ||||||||||   |||||||| | | |||||||||| ||||||||    
T  18797367 ccaattttgacttggtcaacgcttatttggcatgccacgtgtgtaa 18797412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 22587522 - 22587630
Alignment:
Q  218 ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttagt 316  Q
    |||||||||| |||||||| ||||||||| |  |||| |||||||| |||||||||| ||   ||||||||||||||| |||||||||| || |||| |     
T  22587522 ccctaactttcaaaaagttccaattttggtcccctat-tacaaaaactacaattttggccccctaagatttagcctctttgcatctttggtccttttggc 22587620  T
Q  317 caattttgac 326  Q
    ||||||||||    
T  22587621 caattttgac 22587630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 18299376 - 18299511
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| | ||  ||||||| ||||| || |||||||||||  ||| ||| ||||| |||||||||| ||   || |||||||||  | |||    
T  18299376 taaagtgcacttttccacccgtaactttcaaaaactttcaattttggccacctaagtataaaaactacaattttggccccctatgatttagcccttttgc 18299475  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    |||||||||| |||| |||||||||||| |||||||    
T  18299476 atctttgatccttttggtcaattttgaccaagtcaa 18299511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 28617926 - 28618094
Alignment:
Q  202 taaagtgcactttttc-ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctctgcat 300  Q
    |||||| || |||||| |||||||||| ||||  ||||||||||||||  | | ||||||||| | |||||||| ||  |||||||||||| || |||||    
T  28617926 taaagtacattttttctccctaactttcaaaatcttgcaattttggccccccaagtacaaaaacttcaattttgccccctaagatttagcccctttgcat 28618025  T
Q  301 ctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||| |  |||| ||| |||||||| || |||| || |  ||||||  ||| |||||||| |||||||    
T  28618026 ctttggttattttggtctattttgactaattcaatgcctacgtggcagaccacgtgtgtaattaattaa 28618094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 36449781 - 36449855
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||||||  ||| ||||||||| ||||||||||    
T  36449781 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 36449855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 802693 - 802563
Alignment:
Q  197 aaggttaaagtgcactttttcccc-taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||| ||||||| |||||| |||| ||| ||| ||||| ||||||||||||||  || |||||||||| ||||||||||| ||| ||||||||  || ||    
T  802693 aaggctaaagtgtacttttcccccctaagtttcaaaaacttgcaattttggccccctgtgtacaaaaactacaattttgaccctctaagattttacccct 802594  T
Q  295 ctgcatctttgatctttttagtcaattttga 325  Q
     ||||| |||| || |||  |||||||||||    
T  802593 ttgcatatttggtcctttaggtcaattttga 802563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 18868944 - 18869002
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga 275  Q
    ||||||||||| ||||| ||||||||||||||| |||  |||||||| |||||||||||    
T  18868944 cccctaactttcaaaaacttgcaattttggcctcctaaatacaaaaactacaattttga 18869002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 21837073 - 21837119
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggcc 248  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  21837073 taaagtgcactttttcctctaactttcaaaaacttgcaattttggcc 21837119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 8535766 - 8535709
Alignment:
Q  188 agtactttgaaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttg 245  Q
    |||| ||||||||||||||| ||||||| | ||||||||||||||| ||| |||||||    
T  8535766 agtaatttgaaggttaaagtacacttttcctcctaacttttaaaaacttgtaattttg 8535709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 7899980 - 7899853
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| |||||||||||| |  ||| ||||| ||| ||||||||| | ||  |||||||||||| |  ||     
T  7899980 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaactacaattttagccccctaagatttagccccattgt 7899881  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    | |||| |||||||| ||||||||||||    
T  7899880 aactttaatctttttggtcaattttgac 7899853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 36451022 - 36450947
Alignment:
Q  198 aggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattt 272  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||||| |  ||| ||||| ||| ||||||||    
T  36451022 aggttaaagtgcacttttcccccttaactttcaaaaacttgcaattttggtcccctaagtacagaaactacaattt 36450947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 7898690 - 7898855
Alignment:
Q  198 aggttaaagtgcactttt-tcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctct 294  Q
    |||||||||||||||||| |||||| |||||| ||||| |||||||||| |||| ||| ||| | ||| |||||||||| ||   |||||||||||| |     
T  7898690 aggttaaagtgcacttttctccccttaactttcaaaaacttgcaatttttgcctcctaagtatagaaactacaattttggccccctaagatttagcccca 7898789  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
     ||||  ||| ||| ||||  ||||||||||| | ||||| || |  ||||||||||| ||||||||    
T  7898790 ttgcaattttaatccttttgatcaattttgacca-gtcaatgcttacgtggcatgccacgtgtgtaa 7898855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 13567969 - 13568050
Alignment:
Q  196 gaaggttaaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga 275  Q
    ||||||||||||| |||||| |||  |||| ||| ||||| ||||||||||||||  |||  |||||||| |||||||||||    
T  13567969 gaaggttaaagtgtacttttccccttctaagtttcaaaaacttgcaattttggccccctaaatacaaaaactacaattttga 13568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 11938886 - 11938822
Alignment:
Q  202 taaagtgcactttttc--ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaat 264  Q
    |||||||||||||| |  |||||||||| ||||| |||||||||||| || ||| ||||||||||    
T  11938886 taaagtgcacttttccacccctaactttcaaaaacttgcaattttggtctcctaagtacaaaaat 11938822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 810850 - 810802
Alignment:
Q  229 aaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc 277  Q
    ||||| ||||||||||||||  || |||||||||| |||||||||||||    
T  810850 aaaaacttgcaattttggccccctgtgtacaaaaactacaattttgacc 810802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 41878132 - 41878224
Alignment:
Q  235 ttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctttttagtcaattttgac 326  Q
    ||||||||||||||  ||| ||||| ||| ||||||||| | || ||||||||||||| |  ||||  ||| |||||||| ||||||||||||    
T  41878132 ttgcaattttggccccctaagtacagaaactacaattttggccccttaagatttagccccattgcaattttaatctttttggtcaattttgac 41878224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 217 - 366
Target Start/End: Original strand, 31659643 - 31659793
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||| ||||| || |||||||| ||  ||| ||||||||| |||||||||| ||   |||||||||||| |  ||||  ||||||| |||| |    
T  31659643 cccctaactttcaaaaacttacaattttgaccccctaagtacaaaaactacaattttggccccctaagatttagccccattgcaaatttgatccttttgg 31659742  T
Q  316 tcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataat 366  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  31659743 tcaattttgacatagtcaacgcatgcgtggcatgccacgtgtgtaaataat 31659793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 21505419 - 21505542
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcat 300  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||  | || |||||||| ||||||||||| ||  |||||||||||| || |||||    
T  21505419 taaagtgcacttttccccctaactttcaaaaagttgcgattttggcccccgatatacaaaaactacaattttgaccccataagatttagcccctttgcat 21505518  T
Q  301 ctttgatctttttagtcaattttg 324  Q
    ||||| || |||| | ||||||||    
T  21505519 ctttggtccttttggacaattttg 21505542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 7500453 - 7500627
Alignment:
Q  197 aaggttaaagtgcactttttcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctct 294  Q
    |||| |||||||||||||| ||||| |||||| ||||| |||||||||||  | |||| ||| | |||  ||||||||| ||   |||||||||||| ||    
T  7500453 aaggctaaagtgcacttttcccccttaactttcaaaaacttgcaattttgatcctctaagtatagaaaccacaattttggccccctaagatttagcccct 7500552  T
Q  295 ctgcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
     ||||||||||||| |||| ||||||||||||  | ||||||| |  |||||| ||||||||||||| |||||||    
T  7500553 ttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtggcaggccatgtgtgtaattaattaa 7500627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 369
Target Start/End: Original strand, 47369796 - 47369954
Alignment:
Q  212 tttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctt 310  Q
    |||||||||||||||| ||||| |||||||||| ||||  || ||||||||| || |||||| | || ||||||||||||| || |||||||||  |  |    
T  47369796 tttttcccctaactttcaaaaacttgcaattttagcctcataagtacaaaaactataattttggccccttaagatttagcccctttgcatctttagttat 47369895  T
Q  311 tttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||| ||||||||||||  | ||||||| | ||||||| |||| |||||||| |||||||    
T  47369896 tttggtcaattttgacttattcaacgcctatgtggcaggccacgtgtgtaattaattaa 47369954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 22629505 - 22629659
Alignment:
Q  216 tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatcttttta 314  Q
    |||| ||| ||| ||||| ||| ||||||||||| ||| ||||||||| |||||||||| ||   |||||||||||| || |||||||||| || ||||     
T  22629505 tcccttaattttcaaaaacttgtaattttggcctcctaagtacaaaaactacaattttggccccctaagatttagcccctttgcatctttggtccttttg 22629604  T
Q  315 gtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||||||||  | ||||||| |  ||||| ||||| |||||||| |||||||    
T  22629605 gtcaattttgacttattcaacgcctacgtggcctgccacgtgtgtaattaattaa 22629659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 18372538 - 18372385
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||| ||| ||||| ||||||||||||||  ||| ||||||||| |||||||||| ||   |||||||||||| || || ||||||| || |||| |    
T  18372538 cccctaattttcaaaaacttgcaattttggccccctaagtacaaaaactacaattttggccccctaagatttagcccctttgtatctttggtccttttgg 18372439  T
Q  316 tcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||||||  | ||||||  | |||||| ||||| |||||||| |||||||    
T  18372438 tcaattttgacttattcaacgtctatgtggcctgccacgtgtgtaattaattaa 18372385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 18371427 - 18371597
Alignment:
Q  202 taaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||  |||||||| ||||| ||||||||||||||   || ||||||||| ||||||||| | ||  |||||||||||   | |||    
T  18371427 taaagtgcacttttcccctcctaactttcaaaaacttgcaattttggccccttaagtacaaaaactacaattttggccccctaagatttagcacatttgc 18371526  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||||||||| |||| ||||||||||||  | ||||||| |  |||||| |||| |||| ||| |||||||    
T  18371527 atctttgatccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtataattaattaa 18371597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 198 - 326
Target Start/End: Complemental strand, 42886388 - 42886257
Alignment:
Q  198 aggttaaagtgcactttt-tcc-cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctct 294  Q
    |||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||  |||  |||||||| ||||||||| | ||  ||||||||||||  |    
T  42886388 aggttaaagtgcacttttctcctcctaactttcaaaaatttgcaattttgaccccctaaatacaaaaactacaattttagccccctaagatttagcccat 42886289  T
Q  295 ctgcatctttgatctttttagtcaattttgac 326  Q
     ||||||||||||| |||| ||||||||||||    
T  42886288 ttgcatctttgatcattttggtcaattttgac 42886257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 6618208 - 6618372
Alignment:
Q  198 aggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac-ctttaagatttagcctctct 296  Q
    ||||||||||| ||||||||| ||||||||| |||| |||||||||||      ||  || |||||||||||||||||| |  |||||||| |||||  |    
T  6618208 aggttaaagtgtactttttcctctaacttttcaaaacttgcaattttgattccttaaatataaaaattacaattttgactccctaagattttgcctcatt 6618307  T
Q  297 gcatctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    |||  ||||||| ||||  |||||||||||  ||||||||| | ||||||||||||  |||||||    
T  6618308 gcaaatttgatcattttgatcaattttgacctagtcaacgcctatgtggcatgccacatgtgtaa 6618372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 7501950 - 7501780
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||  |||||| ||||| ||||||||||||||  ||| |||  ||||  ||||||||| ||  ||||||| ||||| || |||    
T  7501950 taaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccttaagatgtagcccctttgc 7501851  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  | |||| || |  |||||| |||| |||||||| |||||||    
T  7501850 atctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtgtaattaattaa 7501780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 22630550 - 22630388
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| || |  ||||||| ||||| ||||||||||||||  |||  |||||||| ||||||||| | ||  ||||||| ||||||| ||     
T  22630550 taaagtgcacttttccctccataactttcaaaaacttgcaattttggccccctaattacaaaaactacaattttagccccctaagattcagcctctttgt 22630451  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||| || |||| ||||||||||||  | ||||||| | ||||| | |||| ||||||||    
T  22630450 atctttggtccttttggtcaattttgacttattcaacgcttatgtggtaggccacgtgtgtaa 22630388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 43899451 - 43899610
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac-ctttaagatttagcctctctgcat 300  Q
    |||||| || |||||||| ||||||| ||||| |||||||||||  ||||||  || |||||||||||||||| | || ||| | |||||   | | |||    
T  43899451 taaagtacattttttcccttaactttcaaaaacttgcaattttgatcttctaaatataaaaattacaattttggctctctaaaaattagcacatttacat 43899550  T
Q  301 ctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    ||||||||||||| | ||||||||||  |||||| || || ||||||||||| | ||||||    
T  43899551 ctttgatctttttggccaattttgacttagtcaaagc-tgagtggcatgccacgcgtgtaa 43899610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 11662654 - 11662575
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| |||| ||||  ||||||| ||||| |||||||||| ||  |||||||||||||| || |||||||    
T  11662654 aaggttaaagtgcatttttccccccttaactttcaaaaacttgcaattttagctctctatgtacaaaaactataattttg 11662575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 337
Target Start/End: Complemental strand, 3227692 - 3227554
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||||||  ||| |||| ||||  ||||||| | |||  |||||||||||| |  |||    
T  3227692 taaagtgcacttttccccccctaactttcaaaaacttgcaattttggccccctaagtaccaaaaccacaatttagcacccctaagatttagccccattgc 3227593  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgc 337  Q
    | ||||| || ||||  |||||||||||  |||||||||    
T  3227592 aactttggtccttttgatcaattttgacctagtcaacgc 3227554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 14999249 - 14999126
Alignment:
Q  204 aagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgac-ctttaagatttagcctctctgcatct 302  Q
    |||||||||||| ||||  | |||| |||| ||||||||||| ||  |||  |||||||| |||||||||| | |  |||||||||||| || |||||||    
T  14999249 aagtgcacttttcccccctaattttcaaaacttgcaattttgaccccctaaatacaaaaactacaattttggcgccctaagatttagcccctttgcatct 14999150  T
Q  303 ttgatctttttagtcaattttgac 326  Q
    ||| || |||  ||||||||||||    
T  14999149 ttgttcctttaggtcaattttgac 14999126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 5111694 - 5111637
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    ||||||| |||||||||||||| ||||| ||| |||||  | ||||||||||||||||    
T  5111694 cccctaagttttaaaaagttgcgatttttgccctctattaaaaaaaattacaattttg 5111637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 20163637 - 20163585
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaa 269  Q
    ||||||||||| ||||| |||||||||||||   ||||||||||||| |||||    
T  20163637 cccctaactttcaaaaacttgcaattttggctccctatgtacaaaaactacaa 20163585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 60093 - 60228
Alignment:
Q  202 taaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    ||||||||||||||  ||| |||||||||||||| ||||||||||| ||  ||||||| ||||| ||||||||||| ||  || ||||||||| || |||    
T  60093 taaagtgcacttttcctcctctaacttttaaaaacttgcaattttgaccccctatgtataaaaactacaattttgaccccctatgatttagcccctttgc 60192  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    ||||||| ||||||| |||||||||||| |||||||    
T  60193 atctttggtctttttggtcaattttgaccaagtcaa 60228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 61557 - 61422
Alignment:
Q  202 taaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    ||||||||||||||  |||| ||| ||| ||||| |||||||||| |||  ||| ||||||||| || ||||||| ||   || |||||||||  | |||    
T  61557 taaagtgcacttttcctcccttaattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccctatgatttagcccttttgc 61458  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    ||||||| || |||| |||||||||||| |||||||    
T  61457 atctttggtccttttggtcaattttgaccaagtcaa 61422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 16704595 - 16704469
Alignment:
Q  202 taaagtgcactttt--tcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    ||||||||||||||  |||| ||||||| ||||| ||||||||||| ||  ||| ||||||||| ||||||||||| ||||||||||||||||||| |||    
T  16704595 taaagtgcacttttcctcccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaactacaattttgatcctttaagatttagcctctttgc 16704496  T
Q  299 atctttgatctttttagtcaattttga 325  Q
    | || ||||| |||| |||||||||||    
T  16704495 aactatgatcctttttgtcaattttga 16704469  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 326
Target Start/End: Complemental strand, 1829704 - 1829574
Alignment:
Q  199 ggttaaagtgcacttttt--cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctc 295  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||| ||  ||| ||| ||||| ||||||||| | ||  |||||||||||| ||     
T  1829704 ggttaaagtgcacttttttccccctaacttttaaaaacttgcaattttgaccccctaagtataaaaactacaattttggccccctaagatttagcccctt 1829605  T
Q  296 tgcatctttgatctttttagtcaattttgac 326  Q
    |||||||||| || |||| ||||||||||||    
T  1829604 tgcatctttggtcattttggtcaattttgac 1829574  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 360
Target Start/End: Original strand, 27437831 - 27437992
Alignment:
Q  202 taaagtgcactttt-tcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||||  ||||  | ||||| ||||||||||| ||  |||||||||||  || |||    
T  27437831 taaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcctttgc 27437930  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgta 360  Q
    | ||||| || |||| | |||||||||| || |||||||   | ||||||||||||||||||    
T  27437931 aactttggtccttttggccaattttgaccaaatcaacgctgatttggcatgccatgtgtgta 27437992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 6842381 - 6842246
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||  || ||| ||||||||||||||||||||  |||||| |||||| ||||||||| |  | |||| |||||| || | |||    
T  6842381 taaagtgcacttttccccctctaagtttcaaaaagttgcaattttggccccctatgtgcaaaaactacaattttagttccttaaaatttagtctgtttgc 6842282  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    |||||||||| |||| | |||||||||| |||||||    
T  6842281 atctttgatccttttggccaattttgaccaagtcaa 6842246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 7314883 - 7315052
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    |||||||||||||| |||||  |||||| ||||| ||||||||||||||  ||| |||  ||||  ||||||||||||   |||||||||||| || |||    
T  7314883 taaagtgcacttttccccctctaactttcaaaaacttgcaattttggccc-ctaagtatcaaaacaacaattttgaccccctaagatttagcccctttgc 7314981  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    ||||||| || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  7314982 atctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtgtaattaattaa 7315052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 220 - 326
Target Start/End: Original strand, 26574642 - 26574748
Alignment:
Q  220 ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttagtca 318  Q
    |||||||| ||||| |||||||||||  | |||| ||||||||| ||| ||||||| || ||||||||||||| || |||| ||||||||||||| ||||    
T  26574642 ctaactttcaaaaacttgcaattttgaacctctaagtacaaaaactac-attttgatcccttaagatttagcccctttgcaactttgatcttttttgtca 26574740  T
Q  319 attttgac 326  Q
    ||||||||    
T  26574741 attttgac 26574748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 3333129 - 3333005
Alignment:
Q  197 aaggttaaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctc 293  Q
    |||| |||| ||||||||| |||  |||| ||| |||||||||| |||||||||  ||||||||||||| ||||||||| | ||| ||| |||||||| |    
T  3333129 aaggctaaattgcacttttccccttctaagtttgaaaaagttgcgattttggccccctatgtacaaaaactacaattttaaccctctaaaatttagcccc 3333030  T
Q  294 tctgcatctttgatctttttagtca 318  Q
    | |||| |||||||| |||||||||    
T  3333029 tttgcaactttgatccttttagtca 3333005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 30495794 - 30495722
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||||||||||| |||||||||| |||||   |  |||||||||||||| |||||||||    
T  30495794 taaagtgcactttttcccctaactttcaaaaagttgcgattttaatcccctatgtacaaaaataacaattttg 30495722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 5658757 - 5658886
Alignment:
Q  200 gttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctct 296  Q
    ||||||||||| |||| ||||  ||| ||||||||||||  |||||| |    ||||||||||||| ||||||||||| || |||||||||||||  | |    
T  5658757 gttaaagtgcatttttccccccttaagttttaaaaagttataattttagttccctatgtacaaaaactacaattttgatcccttaagatttagcccattt 5658856  T
Q  297 gcatctttgatctttttagtcaattttgac 326  Q
    ||| |||||||| |||| ||||||||||||    
T  5658857 gcaactttgatccttttggtcaattttgac 5658886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 10785994 - 10785884
Alignment:
Q  217 cccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttag 315  Q
    ||||||||||||||||| ||||||||||  ||  ||| ||||||||| ||||||||| | || ||||||||||||| || |||| |||||||| ||||      
T  10785994 cccctaacttttaaaaatttgcaattttaaccccctaagtacaaaaactacaattttaaccccttaagatttagcccctttgcaactttgatccttttta 10785895  T
Q  316 tcaattttgac 326  Q
     ||||||||||    
T  10785894 ccaattttgac 10785884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 369
Target Start/End: Complemental strand, 7316392 - 7316222
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct-ttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||||||  |||  ||   |||  ||||||||| ||  ||||||||||||| || |||    
T  7316392 taaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaaatattgaaaccacaattttggccccttaagatttagcccctttgc 7316293  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||| || || |||| ||||||||||||  | ||||||| |  |||||| |||| |||||||| |||||||    
T  7316292 atctatggtccttttggtcaattttgacttattcaacgcctacgtggcaagccacgtgtgtaattaattaa 7316222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 1828737 - 1828816
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||| ||||||||| ||||||||||  || ||||||||| ||||||||||||| || || || ||||||||| |||||||    
T  1828737 aaggctaaagtgcattttttcccctttaatttttaaaaatttgcaattttggctttttaagttcaaaaattataattttg 1828816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 29473075 - 29473154
Alignment:
Q  197 aaggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||| |||||||||||| ||||  ||| ||||||||||||||||||||||    ||||| |||||||| |||||||||    
T  29473075 aaggttcaagtgcacttttccccccttaagttttaaaaagttgcaattttggttccctatgaacaaaaataacaattttg 29473154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 360
Target Start/End: Complemental strand, 49531 - 49370
Alignment:
Q  202 taaagtgcactttt-tcccct-aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgc 298  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||||  ||||  | ||||| ||||||||||| ||  |||||||||||  || |||    
T  49531 taaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcctttgc 49432  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgta 360  Q
    | ||||| || |||| | |||||||||| || |||||||   | ||||||||||||||||||    
T  49431 aactttggtccttttggccaattttgaccaaatcaacgctgatttggcatgccatgtgtgta 49370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 18731 - 18809
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacct 278  Q
    ||||||||||||||||||   |||||||||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||    
T  18731 taaagtgcactttttccctcttaacttttaaaaagttgcgattttgacctcctatgaacaaaaactacaattttgacct 18809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 17473 - 17547
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||  ||| ||||||||| ||||||||||    
T  17473 taaagtgcactttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaaactacaattttg 17547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 18874 - 18747
Alignment:
Q  202 taaagtgcactttttccc--ctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||| |  ||| ||||||||| || |||||| | || |||| |||||||| |  |||    
T  18874 taaagtgcactttttccctcctaacttttaaaaatttgcaattttggtcccctaggtacaaaaactataattttggccccttaaaatttagccccattgc 18775  T
Q  299 atctttgatctttttagtcaattttgac 326  Q
    | |||| ||| |||| ||||||||||||    
T  18774 aactttaatcattttggtcaattttgac 18747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 9123 - 8998
Alignment:
Q  202 taaagtgcactttttcc-cctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctttaagatttagcctctc-tgca 299  Q
    ||||||||||||||||| ||| | ||| |||||||||  ||||| |||| ||||||||||||| |||||||||| ||  |||||||||||| ||| ||||    
T  9123 taaagtgcactttttcctccttaatttcaaaaagttgtgatttttgcctcctatgtacaaaaactacaattttggcccctaagatttagcc-ctcatgca 9025  T
Q  300 tctttgatctttttagtcaattttgac 326  Q
    ||||||||| ||||   ||||||||||    
T  9024 tctttgatccttttgaccaattttgac 8998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 6342 - 6452
Alignment:
Q  198 aggttaaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctct 294  Q
    |||||||||||||||||| | ||  ||| ||| |||||||| | ||||| |||  ||||||||||||| ||||||||||| ||  ||||||||||||| |    
T  6342 aggttaaagtgcacttttccgcccttaagtttcaaaaagttacgattttagccccctatgtacaaaaactacaattttgaccccctaagatttagccttt 6441  T
Q  295 ctgcatctttg 305  Q
     ||||||||||    
T  6442 ttgcatctttg 6452  T

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Target: scaffold1303 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 334
Target Start/End: Original strand, 1442 - 1577
Alignment:
Q  202 taaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctctctgc 298  Q
    ||||||| |||||| |||||  |||||| ||||| ||||||||||| ||  ||||||| ||||| || ||||||||||   ||||||||||||  | |||    
T  1442 taaagtgtacttttccccctctaactttaaaaaacttgcaattttgaccccctatgtataaaaactataattttgaccccctaagatttagcccatttgc 1541  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    ||||||| || |||| |||||||||||| |||||||    
T  1542 atctttggtccttttggtcaattttgaccaagtcaa 1577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 13191 - 13267
Alignment:
Q  197 aaggttaaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    |||| |||||||||||||| ||||||||||| |||||||||  |||||| ||| |||||||| |||| |||||||||    
T  13191 aaggctaaagtgcacttttccccctaactttgaaaaagttgtgattttgacctcctatgtacgaaaactacaatttt 13267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 236 - 397
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgc 298  Q
    |||||||||||||  ||||  ||||||| |||||||||||||||||| |  ||||||||||||| || |||||| | ||  ||||| |||||| || |||    
T  236 taaagtgcactttcccccccttaactttcaaaaagttgcaattttggtcccctatgtacaaaaactataattttggtcccctaagaattagcccctttgc 335  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaacgcatgtgtggcatgccatgtgtgtaa 361  Q
    || ||||||| ||||   ||||||||||   |||||||| | |||||||||||| ||||||||    
T  336 atatttgatcctttttcccaattttgac-cggtcaacgcctatgtggcatgccacgtgtgtaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 1055 - 1002
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||||||||||||||| |   |||||||||||| || |||||||    
T  1055 taacttttaaaaagttgcaattttggtcccttatgtacaaaaactataattttg 1002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 369
Target Start/End: Original strand, 19526 - 19661
Alignment:
Q  235 ttgcaattttggccttctatgtacaaaaattacaattttga-cctttaagatttagcctctctgcatctttgatctttttagtcaattttgacaaagtca 333  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||| ||  ||||||||| || || ||||||||||||| |||| ||||||||||||  | |||    
T  19526 ttgcaattttggccccctaagtataaaaactacaattttgatcccctaagatttaacccctttgcatctttgatcattttggtcaattttgacttattca 19625  T
Q  334 acgcatgtgtggcatgccatgtgtgtaaataattaa 369  Q
    |||| |  |||||| ||||  ||||||| |||||||    
T  19626 acgcctacgtggcaggccacatgtgtaattaattaa 19661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 23084 - 23145
Alignment:
Q  202 taaagtgcactttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaa 263  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| || |||| |||| ||||    
T  23084 taaagtgcacttttccccctaactttcaaaaacttgcaattttgtccctctaagtaccaaaa 23145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 7518 - 7394
Alignment:
Q  197 aaggttaaagtgcactttttcccct--aacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacctt-taagatttagcctc 293  Q
    |||| |||||||||||| | |||||  || ||| |||||||| | |||||| ||  ||||||||| ||| |||||||||||||   |||||||||||| |    
T  7518 aaggctaaagtgcacttgtccccctctaagtttgaaaaagttacgattttgaccccctatgtacagaaactacaattttgaccccctaagatttagcccc 7419  T
Q  294 tctgcatctttgatctttttagtca 318  Q
    | |||| |||||||| |||||||||    
T  7418 tttgcaactttgatccttttagtca 7394  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 3690 - 3805
Alignment:
Q  212 tttttcccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt-gacctttaagatttagcctctctgcatctttgatctt 310  Q
    |||||||||||||||| ||||| ||||||||||||||  ||  ||| | ||| || |||||| | ||  |||||||||||| |  |||| |||| |||||    
T  3690 tttttcccctaactttcaaaaacttgcaattttggccccctgagtaaagaaactataattttagtcccctaagatttagccgcattgcaactttaatctt 3789  T
Q  311 tttagtcaattttgac 326  Q
    ||| ||||||||||||    
T  3790 tttggtcaattttgac 3805  T

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Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 4827 - 4751
Alignment:
Q  202 taaagtgcactttttc-ccctaacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttgacc 277  Q
    |||||||||||||  | ||||||||||||||||  |||||||||||||  |||  |||| ||| |||||||||||||    
T  4827 taaagtgcactttccctccctaacttttaaaaacatgcaattttggccccctaaatacagaaactacaattttgacc 4751  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 37151 - 37224
Alignment:
Q  202 taaagtgcactttttcccctaactttt-aaaaagttgcaattttggccttctatgtacaaaaattacaattttg 274  Q
    |||||||||||||| |||||| ||||| ||||| ||||||||||| ||  ||| |||||||||  |||||||||    
T  37151 taaagtgcacttttccccctatcttttaaaaaatttgcaattttgaccccctaagtacaaaaacaacaattttg 37224  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 334
Target Start/End: Complemental strand, 5536 - 5401
Alignment:
Q  202 taaagtgcactttttcccc--taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaattttg-acctttaagatttagcctctctgc 298  Q
    |||||||||||||| ||||  ||| ||| ||||| ||||||||||| ||   || ||||||||| ||||||||||  || ||||||||||||| |  | |    
T  5536 taaagtgcacttttccccccctaattttcaaaaacttgcaattttgaccccttaagtacaaaaactacaattttgcccccttaagatttagccccattac 5437  T
Q  299 atctttgatctttttagtcaattttgacaaagtcaa 334  Q
    |  ||||||| |||| || ||||||||| |||||||    
T  5436 aaatttgatccttttggttaattttgaccaagtcaa 5401  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 49161 - 49109
Alignment:
Q  221 taacttttaaaaagttgcaattttggccttctatgtacaaaaattacaatttt 273  Q
    ||||||||||||| ||||||||||||||| ||| |||  |||| |||||||||    
T  49161 taacttttaaaaacttgcaattttggcctcctaagtattaaaactacaatttt 49109  T

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