View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1462_high_1 (Length: 517)
Name: NF1462_high_1
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1462_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 11897852 - 11897382
Alignment:
| Q |
14 |
aataactacatggaggaaagattgtttggtcgaaaacatcgaagcaaaccaaaactattttacggctgaagttaaccatattaccaaaaggtcattcgac |
113 |
Q |
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| T |
11897852 |
aataactacatggaggaaagatcgtttggtcgaaaacatcgaagcatgccaaaactattttacggcagaagttaaccatattaccaaaaggtcattcgac |
11897753 |
T |
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| Q |
114 |
aaaatctggtgaatatagcgccatgtgtgttagtagattatggttttgtgcaccataaaaatgcgttttgctatgtaaaactccaccccccactcattga |
213 |
Q |
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| T |
11897752 |
aaaatctggttaacatagcgccatgtgtgttagtaaattatggttttgtgcaccaaaaaaatgtgttttgctatgtaaaactcca-ccccaactcattga |
11897654 |
T |
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| Q |
214 |
tttgtatgag--agggaagtaatgggagagcaaacccagaggaaggggtaatcccaccaactggttggggaaatgatgaaaattaaaatgtccgagccta |
311 |
Q |
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| T |
11897653 |
tttgtatgagataaggaagtaatgggagagcaaacccagaggaaggggtaatcccaccaactggttagggaaatgatgaaaattaaaatgtctgagccta |
11897554 |
T |
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| Q |
312 |
gtgcttgggctaagattacgacctatgtggccgaaaaaagtggaaagcagctttagaggctgaaatgcaacnnnnnnntggttgtcgaaaccaataacat |
411 |
Q |
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| T |
11897553 |
gtgcttgggctaagattacggcctatgtggccgaaaaaagtggaaagcagctttagaggttgaaatgcaacaaaaaaatggttgtcgaaatcaat----- |
11897459 |
T |
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| Q |
412 |
tgagcctagtgaaaatttggcagaagaccagaggctccactgcgtctacgatgatgagccttagggatttgagaaagatccattgaattt |
501 |
Q |
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| T |
11897458 |
-------------aatttggcagaagaccagaggctccactgcgtctacgatgatgagccttagggatttaagaaagatccattgaattt |
11897382 |
T |
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