View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1462_low_10 (Length: 234)

Name: NF1462_low_10
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1462_low_10
NF1462_low_10
[»] chr5 (13 HSPs)
chr5 (99-215)||(41334571-41334687)
chr5 (95-215)||(2614553-2614673)
chr5 (99-215)||(18034058-18034174)
chr5 (97-215)||(5257071-5257189)
chr5 (95-215)||(33801545-33801665)
chr5 (98-197)||(25914903-25915002)
chr5 (124-215)||(22512381-22512472)
chr5 (105-211)||(38470659-38470765)
chr5 (98-215)||(7617209-7617326)
chr5 (89-204)||(39122254-39122369)
chr5 (155-215)||(39122397-39122457)
chr5 (99-171)||(30622627-30622699)
chr5 (100-171)||(32473303-32473374)
[»] chr3 (24 HSPs)
chr3 (98-215)||(54246055-54246172)
chr3 (97-215)||(46941129-46941247)
chr3 (99-215)||(53581766-53581882)
chr3 (98-215)||(36150206-36150323)
chr3 (98-215)||(42394326-42394443)
chr3 (99-215)||(54237172-54237288)
chr3 (99-215)||(40808941-40809057)
chr3 (97-215)||(52629904-52630022)
chr3 (98-215)||(47190933-47191050)
chr3 (99-215)||(24688310-24688426)
chr3 (99-215)||(40480825-40480941)
chr3 (99-215)||(45126836-45126952)
chr3 (88-215)||(25413757-25413886)
chr3 (107-215)||(42100764-42100872)
chr3 (98-197)||(1078312-1078411)
chr3 (98-189)||(29556866-29556956)
chr3 (99-215)||(27748639-27748746)
chr3 (100-215)||(51249384-51249499)
chr3 (98-215)||(11064629-11064746)
chr3 (98-171)||(4190172-4190245)
chr3 (152-215)||(53273645-53273708)
chr3 (99-171)||(9434244-9434316)
chr3 (102-177)||(19148882-19148957)
chr3 (119-167)||(45058584-45058632)
[»] chr8 (23 HSPs)
chr8 (96-215)||(11582842-11582961)
chr8 (96-215)||(36743388-36743507)
chr8 (99-215)||(2547072-2547188)
chr8 (103-215)||(29800862-29800974)
chr8 (98-215)||(30660649-30660766)
chr8 (100-215)||(42197344-42197459)
chr8 (105-215)||(29705438-29705548)
chr8 (98-215)||(20148836-20148953)
chr8 (98-215)||(30912469-30912586)
chr8 (99-215)||(9241628-9241744)
chr8 (99-215)||(31384740-31384856)
chr8 (100-215)||(26125711-26125825)
chr8 (105-215)||(2165877-2165987)
chr8 (97-215)||(45397392-45397509)
chr8 (99-215)||(3743847-3743963)
chr8 (98-214)||(1375619-1375735)
chr8 (99-215)||(42295271-42295386)
chr8 (127-215)||(5754979-5755067)
chr8 (99-214)||(40528542-40528657)
chr8 (97-171)||(35181636-35181710)
chr8 (98-171)||(34304908-34304980)
chr8 (126-171)||(18066653-18066698)
chr8 (99-171)||(10678060-10678132)
[»] chr7 (26 HSPs)
chr7 (96-215)||(24000917-24001036)
chr7 (105-215)||(42538345-42538455)
chr7 (98-215)||(5810831-5810948)
chr7 (99-214)||(41861753-41861868)
chr7 (105-215)||(27393174-27393284)
chr7 (98-215)||(16180264-16180381)
chr7 (99-215)||(26898310-26898426)
chr7 (97-215)||(44416840-44416958)
chr7 (98-215)||(44326254-44326371)
chr7 (103-215)||(5015471-5015583)
chr7 (99-215)||(43343532-43343648)
chr7 (105-215)||(32029731-32029841)
chr7 (98-215)||(4638106-4638223)
chr7 (94-215)||(42972928-42973049)
chr7 (99-215)||(10573825-10573941)
chr7 (98-215)||(45326096-45326213)
chr7 (99-215)||(43317519-43317635)
chr7 (98-215)||(35069797-35069914)
chr7 (123-215)||(38160511-38160603)
chr7 (99-215)||(5194139-5194255)
chr7 (98-211)||(47279631-47279744)
chr7 (105-215)||(9216377-9216487)
chr7 (99-215)||(24280504-24280620)
chr7 (97-171)||(40237039-40237113)
chr7 (98-171)||(31408540-31408613)
chr7 (98-171)||(31513407-31513480)
[»] chr1 (17 HSPs)
chr1 (99-214)||(23989431-23989546)
chr1 (99-215)||(5489852-5489968)
chr1 (99-215)||(48498870-48498986)
chr1 (99-215)||(43570994-43571110)
chr1 (100-211)||(37814858-37814969)
chr1 (97-215)||(4401404-4401522)
chr1 (98-215)||(7447901-7448018)
chr1 (98-211)||(24769406-24769519)
chr1 (93-215)||(2497464-2497586)
chr1 (98-215)||(750212-750329)
chr1 (97-215)||(50448166-50448284)
chr1 (95-214)||(4888120-4888238)
chr1 (98-171)||(44112797-44112870)
chr1 (119-169)||(47748463-47748513)
chr1 (99-171)||(35000021-35000093)
chr1 (98-171)||(35003414-35003487)
chr1 (99-171)||(45705945-45706017)
[»] chr6 (17 HSPs)
chr6 (105-215)||(9698247-9698357)
chr6 (97-211)||(21293583-21293697)
chr6 (98-215)||(26669916-26670033)
chr6 (103-215)||(7292823-7292935)
chr6 (100-215)||(13743130-13743245)
chr6 (100-215)||(13748630-13748745)
chr6 (98-211)||(3213480-3213593)
chr6 (98-215)||(21280005-21280122)
chr6 (105-215)||(7367625-7367735)
chr6 (98-215)||(26466875-26466992)
chr6 (99-215)||(30736058-30736174)
chr6 (93-215)||(24203889-24204011)
chr6 (98-215)||(7273242-7273359)
chr6 (100-215)||(30014419-30014534)
chr6 (98-171)||(27441662-27441735)
chr6 (99-171)||(33242523-33242595)
chr6 (88-171)||(33254034-33254118)
[»] chr4 (31 HSPs)
chr4 (99-215)||(27893750-27893866)
chr4 (98-215)||(27550385-27550502)
chr4 (97-215)||(23036056-23036174)
chr4 (98-215)||(27864640-27864757)
chr4 (98-215)||(55966253-55966370)
chr4 (99-215)||(43514594-43514710)
chr4 (98-215)||(1771173-1771290)
chr4 (98-215)||(28982729-28982846)
chr4 (102-215)||(48463361-48463474)
chr4 (99-211)||(23204686-23204798)
chr4 (99-215)||(33703217-33703333)
chr4 (99-215)||(35017808-35017924)
chr4 (97-215)||(31680978-31681096)
chr4 (98-215)||(43735818-43735935)
chr4 (99-215)||(43949709-43949825)
chr4 (98-215)||(28988549-28988665)
chr4 (99-215)||(25051769-25051885)
chr4 (97-215)||(41327449-41327567)
chr4 (103-215)||(45490225-45490337)
chr4 (99-207)||(51512173-51512281)
chr4 (98-215)||(21687082-21687199)
chr4 (104-215)||(41848047-41848158)
chr4 (97-214)||(56215804-56215920)
chr4 (123-215)||(39631177-39631269)
chr4 (98-215)||(41878482-41878592)
chr4 (105-215)||(12497032-12497142)
chr4 (96-215)||(27316617-27316737)
chr4 (111-213)||(46412389-46412491)
chr4 (98-171)||(19880074-19880147)
chr4 (99-171)||(55272284-55272356)
chr4 (95-171)||(3756156-3756232)
[»] chr2 (24 HSPs)
chr2 (96-215)||(4764631-4764750)
chr2 (98-215)||(19047233-19047350)
chr2 (98-215)||(30838708-30838825)
chr2 (98-215)||(43490308-43490425)
chr2 (87-215)||(42849754-42849882)
chr2 (99-215)||(1750490-1750606)
chr2 (99-214)||(16096824-16096940)
chr2 (99-215)||(43335671-43335787)
chr2 (132-215)||(13780676-13780759)
chr2 (105-215)||(12302167-12302277)
chr2 (98-215)||(34817683-34817800)
chr2 (123-215)||(42026845-42026937)
chr2 (152-215)||(8896544-8896607)
chr2 (94-215)||(39149197-39149316)
chr2 (98-171)||(34895648-34895721)
chr2 (99-171)||(11825562-11825634)
chr2 (99-171)||(16804088-16804160)
chr2 (99-171)||(16843370-16843442)
chr2 (99-171)||(43114677-43114749)
chr2 (98-171)||(6518401-6518474)
chr2 (89-171)||(18491825-18491907)
chr2 (99-171)||(4299328-4299400)
chr2 (98-171)||(41281881-41281954)
chr2 (99-171)||(966742-966814)
[»] scaffold0119 (1 HSPs)
scaffold0119 (98-215)||(761-878)
[»] scaffold0038 (1 HSPs)
scaffold0038 (98-215)||(112731-112848)
[»] scaffold0187 (2 HSPs)
scaffold0187 (99-215)||(14097-14212)
scaffold0187 (99-215)||(24425-24540)
[»] scaffold0385 (1 HSPs)
scaffold0385 (99-215)||(11327-11443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (105-215)||(23335-23445)
[»] scaffold0003 (1 HSPs)
scaffold0003 (98-171)||(45626-45699)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 41334571 - 41334687
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  41334571 gagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 41334670  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  41334671 agtgtggttgtgagatg 41334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 2614553 - 2614673
Alignment:
Q  95 aatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaag 194  Q
    ||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  2614553 aatagagtaatgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaag 2614652  T
Q  195 ataaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||||    
T  2614653 ataaagtgtggttgtgagatg 2614673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 18034174 - 18034058
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18034174 gagtgatgatacatgtaccaccccatatggcaatacaccctttacacccatataaaattctgacacgtggcaacctggaccccacacaaatagaagataa 18034075  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  18034074 agtgtggttgtgagatg 18034058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 5257189 - 5257071
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||    
T  5257189 tagagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagat 5257090  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  5257089 aaagtgtggttgtgagatg 5257071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 33801665 - 33801545
Alignment:
Q  95 aatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaag 194  Q
    ||||||||| ||||| |||||||  |  |||||||||||||| ||||||||||| | |||||||||||| |||||||| |||| ||||||||||||||||    
T  33801665 aatagagtgatgatatatgtaccttcccatgtggcaatacactctttacacccacacaaaattctgacacgtggcaacttggatcccacacaaatagaag 33801566  T
Q  195 ataaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||||    
T  33801565 ataaagtgtggttgtgagatg 33801545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 25914903 - 25915002
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  25914903 agagtgatgatacatgtaccacctcatgtggcaatacaccatttacacccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 25915002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 22512472 - 22512381
Alignment:
Q  124 tgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    ||||||||||||| ||||||| ||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22512472 tgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataaagtgtggttgtgagatg 22512381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 38470765 - 38470659
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||| | |||| || |||||||||||| |||||||||||||||||||    
T  38470765 tgatacatgtaccacctcatatggcaatacaccctttacacccacataaaattctgatacgtggtaatctggaccccacataaatagaagataaagtgtg 38470666  T
Q  205 gttgtga 211  Q
     ||||||    
T  38470665 attgtga 38470659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 7617326 - 7617209
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||| ||||  ||||||||||||||  |||||||| | | |||||||||||||||| |||| | || |||||| ||||||||||||    
T  7617326 agagtgatgatacatgtatcaccccatgtggcaatacaccttttacaccaacacaaaattctgacatgtgacaacttagatcccacataaatagaagata 7617227  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  7617226 aagtgtggttgtgagatg 7617209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 39122254 - 39122369
Alignment:
Q  89 atatataatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaa 188  Q
    |||||| | |||||||||||||||||||||||  ||||| ||||| |   |||||| ||| | || ||||||||||||||||||||  ||||||||||||    
T  39122254 atatattaaagagtggtgatacatgtaccaccccatgtgacaatatatcatttacatccacacaagattctgacatgtggcaacctaaaccccacacaaa 39122353  T
Q  189 tagaagataaagtgtg 204  Q
    ||||||||||||||||    
T  39122354 tagaagataaagtgtg 39122369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 39122397 - 39122457
Alignment:
Q  155 attctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  39122397 attctgacatgtggcaacctaaaccccacacaaatagaagataaagtgtagttgtgagatg 39122457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 30622627 - 30622699
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  ||||||||||||||   ||||||||| | |||||| |||||||||||||    
T  30622627 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaattttgacatgtggcaa 30622699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 32473303 - 32473374
Alignment:
Q  100 agtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||| ||||  ||||||||||||||   ||||||||| | ||||||||||||||||||||    
T  32473303 agtggtgatacatgtac-acctccatgtggcaatacacctcttacacccacacaaaattctgacatgtggcaa 32473374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 54246055 - 54246172
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54246055 agagtgatgatacatgtaccaccccatgtggcaatacattctttacacccacataaaattctgacatgtggcaacctggaccccacacaaatagaagata 54246154  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  54246155 aagtgtggttgtgagatg 54246172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 46941247 - 46941129
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||    
T  46941247 tagagtgatgatacatgtaccaccccatgtggcaatacactctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagat 46941148  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  46941147 aaagtgtggttgtgagatg 46941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 53581766 - 53581882
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||| ||||||||| ||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  53581766 gagtgatgatacctgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 53581865  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  53581866 agtgtggttgtgagatg 53581882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 36150323 - 36150206
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| ||||||||||||||||||    
T  36150323 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 36150224  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  36150223 aagtgtggttgtgagatg 36150206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 42394326 - 42394443
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||    
T  42394326 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 42394425  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  42394426 aagtgtggttgtgagatg 42394443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 54237288 - 54237172
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||    
T  54237288 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaatattctgacacgtggcaatctggaccccacacaaatagaagataa 54237189  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  54237188 agtgtggttgtgagatg 54237172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 40809057 - 40808941
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  ||||||||||||||  |||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  40809057 gagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 40808958  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  40808957 agtgtggttgtgagatg 40808941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 52630022 - 52629904
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| || ||||||||||||| ||| |||||||||||    
T  52630022 tagagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtagcaacctggaccctacataaatagaagat 52629923  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  52629922 aaagtgtggttgtgagatg 52629904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 47190933 - 47191050
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||    |||||||||||||| ||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  47190933 agagtgatgatacatgtaccattccatgtggcaatacaccctttacacccacacaaaattctgacatgtggtaacttggaccccacacaaatagaagata 47191032  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  47191033 aagtgtggttgtgagatg 47191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 24688310 - 24688426
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  ||||||||||||||  ||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||||||    
T  24688310 gagtgatgatacatgtaccaccccatgtggcaatacaccatttacccccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 24688409  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  24688410 agtgtggttgtgagatg 24688426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 40480941 - 40480825
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||| ||||  ||| |||||||||| ||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||    
T  40480941 gagtgatgatacatgtatcaccccatgcggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggaccctacacaaatagaagataa 40480842  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  40480841 agtgtggttgtgagatg 40480825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 45126836 - 45126952
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||||||||||||||||||||   |||||||||||||| ||||||||||| ||||||||||| ||||||| || |||||||||||| |||||||| ||||    
T  45126836 gagtggtgatacatgtaccactccatgtggcaatacaccctttacacccacataaaattctggcatgtggtaatctggaccccacataaatagaaaataa 45126935  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  45126936 agtgtggttgtgagatg 45126952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 25413886 - 25413757
Alignment:
Q  88 tatatataat--agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacac 185  Q
    ||||||||||  |||||| ||||||||||||||||  || || |||||||| ||||||||||| | |||| ||||||| |||| ||||||||||||||||    
T  25413886 tatatataatccagagtgatgatacatgtaccaccccatatgacaatacaccctttacacccacacaaaactctgacacgtggtaacctggaccccacac 25413787  T
Q  186 aaatagaagataaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||||||||||||    
T  25413786 aaatagaagataaagtgtggttgtgagatg 25413757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 42100872 - 42100764
Alignment:
Q  107 atacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggt 206  Q
    ||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||    
T  42100872 atacatgtaccacctcatgtggcaatgcaccctttacacccacataaaattctgacacgtggcaacctgaactccacacaaataaaagataaaatgtggt 42100773  T
Q  207 tgtgagatg 215  Q
    |||||||||    
T  42100772 tgtgagatg 42100764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 1078411 - 1078312
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||| ||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  1078411 agagtgatgatacatgtaccacctcatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgaactccacacaaatagaagata 1078312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 29556866 - 29556956
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaat 189  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  29556866 agagtggtgatacatgtaccactacatgtggcaatacacaatttacacccatataaaa-tctgacatgtggcaacctgaaccccacacaaat 29556956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 27748746 - 27748639
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||||||  ||||||||||||||         | | | |||||||||||||||||||||||||||||||||||||||||||||||    
T  27748746 gagtggtgatacatgtaccaccccatgtggcaatacac---------cgacacaaaattctgacatgtggcaacctggaccccacacaaatagaagataa 27748656  T
Q  199 agtgtggttgtgagatg 215  Q
    ||| | |||||||||||    
T  27748655 agtattgttgtgagatg 27748639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 51249499 - 51249384
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    ||||||||||||||||   ||| || ||  ||||||| | |||||  |||| |||||||||||||||||||| ||||| ||||||||||||||||| |||    
T  51249499 agtggtgatacatgtatatcctcatatgataatacactccttacattcatacaaaattctgacatgtggcaatctggatcccacacaaatagaagagaaa 51249400  T
Q  200 gtgtggttgtgagatg 215  Q
    ||||||||||||||||    
T  51249399 gtgtggttgtgagatg 51249384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 11064629 - 11064746
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||   ||| |||| |||||||| | ||||||||| | |||||| |||||||||| || || ||||||||||||||||||||      
T  11064629 agagtggtgatacatgtacactcttgtgtgacaatacaccccttacacccacacaaaattttgacatgtggtaatctagaccccacacaaatagaagagt 11064728  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||| || |||||||    
T  11064729 aagtgtgattatgagatg 11064746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 4190172 - 4190245
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||   ||||||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  4190172 agagtggtgatacatgtatacccttatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 4190245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 53273645 - 53273708
Alignment:
Q  152 aaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||||| | |||| |||||||| |||||| ||||| |||||||||| |||||||||||||    
T  53273645 aaaattctgatacgtggtaacctggatcccacataaataaaagataaagtatggttgtgagatg 53273708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 9434316 - 9434244
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||   |  ||||||||||||||   ||||||||| | ||||||||||||||||||||    
T  9434316 gagtggtgatacatgtacactcccatgtggcaatacacctcttacacccacacaaaattctgacatgtggcaa 9434244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 19148957 - 19148882
Alignment:
Q  102 tggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctgga 177  Q
    |||||| ||||||||  ||  ||||||||||||||   ||||||||| | ||||||||||||| ||||||||||||    
T  19148957 tggtgacacatgtacacccccatgtggcaatacaccacttacacccacacaaaattctgacatatggcaacctgga 19148882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 45058632 - 45058584
Alignment:
Q  119 ccttatgtggcaatacacactttacacccatataaaattctgacatgtg 167  Q
    ||||| |||||||||||| ||| ||||||| |||||| |||||||||||    
T  45058632 ccttaggtggcaatacacccttgacacccacataaaaatctgacatgtg 45058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 11582961 - 11582842
Alignment:
Q  96 atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaaga 195  Q
    |||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  11582961 atagagtaatgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaaga 11582862  T
Q  196 taaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||    
T  11582861 taaagtgtggttgtgagatg 11582842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 36743388 - 36743507
Alignment:
Q  96 atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaaga 195  Q
    |||||||| ||||||||||||||||  ||||||||||||||  |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  36743388 atagagtgatgatacatgtaccaccccatgtggcaatacaccatttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaaga 36743487  T
Q  196 taaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||    
T  36743488 taaagtgtggttgtgagatg 36743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 2547188 - 2547072
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||| |||||||| |||| ||||||||||||||||||||    
T  2547188 gagtgatgatacatgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggatcccacacaaatagaagataa 2547089  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  2547088 agtgtggttgtgagatg 2547072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 29800862 - 29800974
Alignment:
Q  103 ggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtg 202  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  29800862 ggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagataaagtg 29800961  T
Q  203 tggttgtgagatg 215  Q
    |||||||||||||    
T  29800962 tggttgtgagatg 29800974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 30660649 - 30660766
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||| || | ||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  30660649 agagtgatgatacatgtatcatcctatgtggcaatacaccctttacatccacataaaattctgacacgtggcaacctggaccccacacaaatagaagata 30660748  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||||||||||| |||||    
T  30660749 aagtgtggttgtaagatg 30660766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 42197344 - 42197459
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    |||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  42197344 agtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattttgacacgtggcaatctggaccccacacaaatagaagataaa 42197443  T
Q  200 gtgtggttgtgagatg 215  Q
    ||||||||||||||||    
T  42197444 gtgtggttgtgagatg 42197459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 29705548 - 29705438
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  29705548 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccgcacaaatagaagataaagtgtg 29705449  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  29705448 gttgtgagatg 29705438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 20148953 - 20148836
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||| ||||    
T  20148953 agagtggtgatacatgtaccacaccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggatcccacataaatagatgata 20148854  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  20148853 aagtgtggttgtgagatg 20148836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 30912469 - 30912586
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  30912469 agagtgatgatacatgtaccaccccatgtggcaatacactctttacacccacacaaaattctgacacgtggcaacctagaccccacacaaatagaagata 30912568  T
Q  198 aagtgtggttgtgagatg 215  Q
    | ||| ||||||||||||    
T  30912569 aggtgcggttgtgagatg 30912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 9241744 - 9241628
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  ||||||||| |||| |||| |||||| | |||||||||||| |||||||||||||||||||| |||||||||||||    
T  9241744 gagtgatgatacatgtaccaccccatgtggcaacacaccctttgcacccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 9241645  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  9241644 agtgtggttgtgagatg 9241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 31384856 - 31384740
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||| ||||||||||  ||||||||||| || ||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  31384856 gagtgatgatatatgtaccaccccatgtggcaatataccctttacatccacataaaattctgacacgtagcaacctggaccccacacaaatagaagataa 31384757  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  31384756 agtgtggttgtgagatg 31384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 26125825 - 26125711
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    |||||||||| ||||||||||  |||||||||||||| ||||||||||  |||||||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  26125825 agtggtgatatatgtaccaccccatgtggcaatacaccctttacacccgcataaaattctgacacgtggcaatctgga-cccacataaatagaagataaa 26125727  T
Q  200 gtgtggttgtgagatg 215  Q
    ||||||||||||||||    
T  26125726 gtgtggttgtgagatg 26125711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 2165877 - 2165987
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    |||||||||||||| |  ||||| |||||||| ||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  2165877 tgatacatgtaccatcccatgtgacaatacaccctttacacccacacaaaattctgacacgtggcaacctgaaccccacacaaatagaagataaagtgtg 2165976  T
Q  205 gttgtgagatg 215  Q
    ||| |||||||    
T  2165977 gttatgagatg 2165987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 45397509 - 45397392
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||  ||||||||| |||| ||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  45397509 tagagtgatgatacatgtaccaccc-atgtggcaacacaccctttacacccacacaaaattctgacacgtggcaatctggagcccacacaaatagaagat 45397411  T
Q  197 aaagtgtggttgtgagatg 215  Q
    ||| |||||||||||||||    
T  45397410 aaattgtggttgtgagatg 45397392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 3743963 - 3743847
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||| ||||||||||  |||| ||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||| ||| |||||||||||||    
T  3743963 gagtgatgatatatgtaccaccccatgtagcaatacaccctttacacccacataaaattctgacacgtggcaatctgaaccctacataaatagaagataa 3743864  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  3743863 agtgtggttgtgagatg 3743847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 1375735 - 1375619
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||||| |||||| |||||||  ||||||||||| | || ||||| ||| ||||||| ||| || ||||||||||||||||||    
T  1375735 agagtggtgatacatgtaccaccctatgtgacaatacattctttacacccacacaagattctaacacgtggcaatctgaactccacacaaatagaagata 1375636  T
Q  198 aagtgtggttgtgagat 214  Q
    |||||| ||||||||||    
T  1375635 aagtgtagttgtgagat 1375619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 42295386 - 42295271
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||| |||||||| | |||||||||||| || ||||||| ||| | ||||||||||||||||||||| |||| |||||| |||||||||||||    
T  42295386 gagtgatgataaatgtaccatcctatgtggcaatataccctttacatccacacaaaattctgacatgtggcaacttgga-cccacataaatagaagataa 42295288  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  42295287 agtgtggttgtgagatg 42295271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 5755067 - 5754979
Alignment:
Q  127 ggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  5755067 ggcaatacaccctttacacccacacaaaattctaacacgtggcaacttggatcccacataaatagaagataaagtgtggttgtgagatg 5754979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 40528542 - 40528657
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||||||||||||||| |  ||| ||||| ||||| |   |||||| ||| | |||||| ||||||||| |||| || ||||||||||||||||||| ||    
T  40528542 gagtggtgatacatgtgcaccctcatgtgacaatatatcatttacatccacacaaaattatgacatgtgacaacttgaaccccacacaaatagaagagaa 40528641  T
Q  199 agtgtggttgtgagat 214  Q
    ||||||||||||||||    
T  40528642 agtgtggttgtgagat 40528657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 35181710 - 35181636
Alignment:
Q  97 tagagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||| ||||| ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  35181710 tagagtggtgatacatgtac-accttcatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 35181636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 34304980 - 34304908
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||| |||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  34304980 agagtggtgatacatgtac-accccatgtggcaatacacctcttacacccaaacaaaatcctgacatgtggcaa 34304908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 18066653 - 18066698
Alignment:
Q  126 tggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||   ||||||||| ||||||||||||||||||||||    
T  18066653 tggcaatacacctcttacacccacataaaattctgacatgtggcaa 18066698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 10678060 - 10678132
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  |||||||||||||    ||||||||| | ||||| ||||||||||||||    
T  10678060 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccacacaaaatcctgacatgtggcaa 10678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 24000917 - 24001036
Alignment:
Q  96 atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaaga 195  Q
    |||||||  ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  24000917 atagagtaatgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaaga 24001016  T
Q  196 taaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||    
T  24001017 taaagtgtggttgtgagatg 24001036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 42538345 - 42538455
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  42538345 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 42538444  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  42538445 gttgtgagatg 42538455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 5810831 - 5810948
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||    
T  5810831 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacatgtggcaacttggaccccacacaaatagaagata 5810930  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  5810931 aagtgtggttgtgagatg 5810948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 41861868 - 41861753
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||||||||||||||||||||   |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  41861868 gagtggtgatacatgtaccactccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccatacaaatagaagataa 41861769  T
Q  199 agtgtggttgtgagat 214  Q
    ||||||||||||||||    
T  41861768 agtgtggttgtgagat 41861753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 27393174 - 27393284
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||  |||||||||||||  ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  27393174 tgatacatgtaccaccccatgtggcaatacatcctttacacccacataaaattctgacatgaggcaacctggaccccacataaatagaagataaagtgtg 27393273  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  27393274 gttgtgagatg 27393284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 16180264 - 16180381
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  ||||||||||||||  |||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  16180264 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 16180363  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  16180364 aagtgtggttgtgagatg 16180381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 26898310 - 26898426
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||||||||||||||||||| | |||||||||||||||  |||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  26898310 gagtggtgatacatgtaccatcctatgtggcaatacaccttttacacccacataaaattctgacacgtggtaacctggaccccacacaaatagaatataa 26898409  T
Q  199 agtgtggttgtgagatg 215  Q
    ||||||||||| |||||    
T  26898410 agtgtggttgtaagatg 26898426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 44416840 - 44416958
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||| ||||||||||||||  |||||| ||| | ||| |||||||| |||||||| |||||||||||||||||||||||    
T  44416840 tagagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaatttctgacacgtggcaacttggaccccacacaaatagaagat 44416939  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  44416940 aaagtgtggttgtgagatg 44416958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 44326371 - 44326254
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||| ||||    
T  44326371 agagtggtgatacatgtaccacaccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggatcccacataaatagatgata 44326272  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  44326271 aagtgtggttgtgagatg 44326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 5015583 - 5015471
Alignment:
Q  103 ggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtg 202  Q
    ||||||||||||||||||  ||||||||||||||  ||||||| || | |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  5015583 ggtgatacatgtaccaccccatgtggcaatacaccttttacactcacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataaagtg 5015484  T
Q  203 tggttgtgagatg 215  Q
    |||||||||||||    
T  5015483 tggttgtgagatg 5015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43343532 - 43343648
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||| ||||||||||||||  |||||| ||| | ||| |||||||| |||||||| |||||||||||||||||||||||||    
T  43343532 gagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaatttctgacacgtggcaacttggaccccacacaaatagaagataa 43343631  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  43343632 agtgtggttgtgagatg 43343648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 32029731 - 32029841
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  32029731 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataaagtgtg 32029830  T
Q  205 gttgtgagatg 215  Q
    ||||| |||||    
T  32029831 gttgttagatg 32029841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 4638106 - 4638223
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||||| || ||| |||||||| ||||||| ||||| || ||||||||| |||| ||||| ||||||||||||||||||||||    
T  4638106 agagtggtgatacatgtaccaccctacgtgacaatacaccctttacatccatacaagattctgacacgtggtaacctagaccccacacaaatagaagata 4638205  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||| |||||||||||||    
T  4638206 aagtatggttgtgagatg 4638223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 42973049 - 42972928
Alignment:
Q  94 taatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaa 193  Q
    |||||||||  |||||||||||| | | |||||||||||||||  |||||||||| | |||||||||||| |||||||| ||||||||||||||||||||    
T  42973049 taatagagtaatgatacatgtactatcctatgtggcaatacaccatttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaa 42972950  T
Q  194 gataaagtgtggttgtgagatg 215  Q
    |||||| |||||||||||||||    
T  42972949 gataaaatgtggttgtgagatg 42972928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 10573941 - 10573825
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||||||  ||||| ||||| |  ||||||||||| |||||||||||| ||||||||| || ||||||||| |||||||||||||    
T  10573941 gagtggtgatacatgtaccaccgcatgtgacaatatatcctttacacccacataaaattctgatatgtggcaatcttgaccccacataaatagaagataa 10573842  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  10573841 agtgtggttgtgagatg 10573825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 45326213 - 45326096
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||||||  ||||| ||||||||  |||||||||| |||||||||||||| |||| |  |||||||||||| ||||||||||||    
T  45326213 agagtggtgatacatgtaccaccccatgtgacaatacaccatttacacccacataaaattctgacaggtggtagtctggaccccacataaatagaagata 45326114  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||| ||||||||||    
T  45326113 aagtgtgattgtgagatg 45326096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 43317635 - 43317519
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||  |||| ||||||||||||| | ||||||||| | |||||||||||||||||||| || ||||||||||||||||||||  |    
T  43317635 gagtggtgatacatgtacacccttgtgtggcaatacaccccttacacccacacaaaattctgacatgtggcaatctagaccccacacaaatagaagagta 43317536  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||| ||||||||||    
T  43317535 agtgtgattgtgagatg 43317519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 35069914 - 35069797
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| |||||||||||||| | |||||||||||| |  ||||||| | | | |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  35069914 agagtgatgatacatgtaccatcctatgtggcaatatatcctttacatctacacaaaattctgacacgtggcaacttggacctcacataaatagaagata 35069815  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  35069814 aagtgtggttgtgagatg 35069797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 38160511 - 38160603
Alignment:
Q  123 atgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||||||||| | ||||||||| | |||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  38160511 atgtggcaatacaccccttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataaagtgtagttgtgagatg 38160603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 5194139 - 5194255
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||| |||||||||||||  |||| ||||||||||||  | ||||||||| | |||||| ||||||||||||| || ||||||||||||||||||||  |    
T  5194139 gagtagtgatacatgtacacccttgtgtggcaatacaacccttacacccacacaaaattttgacatgtggcaatctagaccccacacaaatagaagagta 5194238  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||| ||||||||||    
T  5194239 agtgtgattgtgagatg 5194255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 47279631 - 47279744
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||| |  || || |||||||| ||||| ||||| |||||||||||| |||||| || ||||| || | | ||||||||||||    
T  47279631 agagtggtgatacatgtaccatcccatctgacaatacaccctttatacccacataaaattctgatatgtggtaatctggatcctatataaatagaagata 47279730  T
Q  198 aagtgtggttgtga 211  Q
    ||||||||||||||    
T  47279731 aagtgtggttgtga 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 9216487 - 9216377
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||| || |||||||  ||||| ||||||||  |||||| ||| | |||||||||||||| |||||| |  ||||||||||||||||||||||| ||||    
T  9216487 tgatatatataccaccccatgtgacaatacaccttttacatccacacaaaattctgacatgcggcaacttaaaccccacacaaatagaagataaaatgtg 9216388  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  9216387 gttgtgagatg 9216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 24280504 - 24280620
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||  | ||| |||  |||||||   |||||| |  | |||||||||| || ||||||| |||||||||||||||||||||| ||    
T  24280504 gagtggtgatacatgtacacctttacgtgataatacacctcttacactcgcacaaaattctgatatatggcaacttggaccccacacaaatagaagagaa 24280603  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||| ||||||||||    
T  24280604 agtgtgattgtgagatg 24280620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 40237113 - 40237039
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  40237113 tagagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 40237039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 31408540 - 31408613
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||  ||  ||||| ||||||||   ||||||||| ||||||| ||||||||||||||    
T  31408540 agagtggtgatacatgtacacccccatgtgacaatacacctcttacacccacataaaatcctgacatgtggcaa 31408613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 31513480 - 31513407
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||  ||||||||||||||||||   ||||| | | | ||||| ||||||||||||||    
T  31513480 agagtggtgatacatgtacacccttatgtggcaatacacctcttacatctacacaaaatcctgacatgtggcaa 31513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 23989431 - 23989546
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||    
T  23989431 gagtggtgatacatgtaccaccctatatggcaatacaccctttacacccacacaagattctgacatgtggcaacctggaccccacacaaatagaagataa 23989530  T
Q  199 agtgtggttgtgagat 214  Q
    ||||||||||||||||    
T  23989531 agtgtggttgtgagat 23989546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 5489968 - 5489852
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  5489968 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 5489869  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  5489868 agtgtggttgtgagatg 5489852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 48498870 - 48498986
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  48498870 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 48498969  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  48498970 agtgtggttgtgagatg 48498986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43570994 - 43571110
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  43570994 gagtgatgatatatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 43571093  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  43571094 agtgtggttgtgagatg 43571110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 37814969 - 37814858
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    |||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  37814969 agtggtgatacatgtaccaccccatgtggcaatacaccctttacatccatataaaattctgacacgtggcaatctggaccccacataaatagaagataaa 37814870  T
Q  200 gtgtggttgtga 211  Q
    ||||||||||||    
T  37814869 gtgtggttgtga 37814858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 4401522 - 4401404
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||| ||||||   |||||||||||||||||||||||    
T  4401522 tagagtgatgatacatgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcatattggaccccacacaaatagaagat 4401423  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  4401422 aaagtgtggttgtgagatg 4401404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 7448018 - 7447901
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||    |||||||||||||| ||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||    
T  7448018 agagtgatgatacatgtaccattccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 7447919  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  7447918 aagtgtggttgtgagatg 7447901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 24769406 - 24769519
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||| ||| | |||||||||||| |||||||| ||||||||||||||||||||||||    
T  24769406 agagtgatgatacatgtaccaccccatgtggcaatacactctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 24769505  T
Q  198 aagtgtggttgtga 211  Q
    ||||||||||||||    
T  24769506 aagtgtggttgtga 24769519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 2497464 - 2497586
Alignment:
Q  93 ataatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaataga 192  Q
    |||||||||||||||||||||||||||   |||||||||||||| ||||| ||||| |||||||||||||| ||| ||| ||||| |||||| |||||||    
T  2497464 ataatagagtggtgatacatgtaccacaccatgtggcaatacaccctttatacccacataaaattctgacacgtgacaatctggatcccacataaataga 2497563  T
Q  193 agataaagtgtggttgtgagatg 215  Q
     ||||||||||||||||||||||    
T  2497564 tgataaagtgtggttgtgagatg 2497586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 750212 - 750329
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| |||||||||||||| |  |||||||||||||| ||||||||||| | |||||||||||| |||| ||| ||||||||||||||||||||||||    
T  750212 agagtgatgatacatgtaccatcccatgtggcaatacaccctttacacccacacaaaattctgacacgtggtaacatggaccccacacaaatagaagata 750311  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||||||||| |||||||    
T  750312 aagtgtggttttgagatg 750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 50448166 - 50448284
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| |||||||| |||| |||||| |||||||||||    
T  50448166 tagagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacatggaacccacaaaaatagaagat 50448265  T
Q  197 aaagtgtggttgtgagatg 215  Q
    ||| ||||||||| |||||    
T  50448266 aaaatgtggttgtaagatg 50448284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 4888238 - 4888120
Alignment:
Q  95 aatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaag 194  Q
    ||||||||| ||||||||||||||||  ||||||||||| |  ||||||| ||| | |||||||||| |  ||||||  ||||| ||||||||||||||     
T  4888238 aatagagtgatgatacatgtaccaccc-atgtggcaatatatcctttacatccacacaaaattctgatacatggcaatttggacaccacacaaatagaaa 4888140  T
Q  195 ataaagtgtggttgtgagat 214  Q
    ||||||||||||||||||||    
T  4888139 ataaagtgtggttgtgagat 4888120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 44112870 - 44112797
Alignment:
Q  98 agagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||| ||||| ||||||||||||||   ||||||||| | ||||||||||||||||||||    
T  44112870 agagtggtgatacatgtac-accttcatgtggcaatacacctcttacacccacacaaaattctgacatgtggcaa 44112797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 47748463 - 47748513
Alignment:
Q  119 ccttatgtggcaatacacactttacacccatataaaattctgacatgtggc 169  Q
    ||||| |||||||||||| ||| |||||||||||||| |||||||||||||    
T  47748463 ccttaggtggcaatacacccttgacacccatataaaaatctgacatgtggc 47748513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 35000021 - 35000093
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  |||||||||||||    ||||||||||| ||||| ||||||||||||||    
T  35000021 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccatacaaaatcctgacatgtggcaa 35000093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 35003487 - 35003414
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||| ||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  35003487 agagtggtgatacatgcacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 35003414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 45706017 - 45705945
Alignment:
Q  99 gagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||| ||||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  45706017 gagtggtgatacatgtac-acctccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 45705945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 9698247 - 9698357
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  9698247 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 9698346  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  9698347 gttgtgagatg 9698357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 21293583 - 21293697
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||    
T  21293583 tagagtggtgatacatgtaccacctcatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggaccccacataaatagaagat 21293682  T
Q  197 aaagtgtggttgtga 211  Q
    |||||||||||||||    
T  21293683 aaagtgtggttgtga 21293697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 26669916 - 26670033
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||| ||||||| ||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||    
T  26669916 agagcggtgatatatgtaccacctcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 26670015  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  26670016 aagtgtggttgtgagatg 26670033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 7292935 - 7292823
Alignment:
Q  103 ggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtg 202  Q
    ||||||||||||||||||  |||||||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7292935 ggtgatacatgtaccaccccatgtggcaatacaccctttacacacaaacaaaattctgacacgtggcaacctggaccccacacaaatagaagataaagtg 7292836  T
Q  203 tggttgtgagatg 215  Q
    |||||||||||||    
T  7292835 tggttgtgagatg 7292823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 13743130 - 13743245
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||    
T  13743130 agtggtgatacatgtaccaccctatgtggcaatatatcctttacacccacacaagattctgacacgtggcaacctggaccccacacaaatagaagataaa 13743229  T
Q  200 gtgtggttgtgagatg 215  Q
    ||||||||||||||||    
T  13743230 gtgtggttgtgagatg 13743245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 13748630 - 13748745
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||    
T  13748630 agtggtgatacatgtaccaccctatgtggcaatatatcctttacacccacacaagattctgacacgtggcaacctggaccccacacaaatagaagataaa 13748729  T
Q  200 gtgtggttgtgagatg 215  Q
    ||||||||||||||||    
T  13748730 gtgtggttgtgagatg 13748745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 3213593 - 3213480
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  3213593 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggaccccacataaatagaagata 3213494  T
Q  198 aagtgtggttgtga 211  Q
    |||| |||||||||    
T  3213493 aagtatggttgtga 3213480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 21280122 - 21280005
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  ||||||||||| || ||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||    
T  21280122 agagtgatgatacatgtaccaccccatgtggcaatataccctttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 21280023  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  21280022 aagtgtggttgtgagatg 21280005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 7367735 - 7367625
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||| ||||||||||    
T  7367735 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggatcccacataaatagaaaataaagtgtg 7367636  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  7367635 gttgtgagatg 7367625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 26466992 - 26466875
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| |||||||| ||||||| |||||||||||||||  |||||||||||| ||||| |||| | ||||||||||| |||||| ||||||||||||||    
T  26466992 agagtgatgatacatttaccaccctatgtggcaatacaccttttacacccatacaaaatcctgatacgtggcaacctgaaccccaaacaaatagaagata 26466893  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  26466892 aagtgtggttgtgagatg 26466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 30736174 - 30736058
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||||||||||| |  |||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||||||||| |||||||||||||    
T  30736174 gagtgatgatacatgtaccatcccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 30736075  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||| ||||||||||    
T  30736074 agtgtgattgtgagatg 30736058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 24203889 - 24204011
Alignment:
Q  93 ataatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaataga 192  Q
    ||||| ||||| |||||||||||||||   ||||| |||||||| ||||||| ||| | |||||||||||| |||||||| |||||||||||||||||||    
T  24203889 ataattgagtgatgatacatgtaccactccatgtgacaatacaccctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaataga 24203988  T
Q  193 agataaagtgtggttgtgagatg 215  Q
    | |||||||||||||||||||||    
T  24203989 atataaagtgtggttgtgagatg 24204011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 7273242 - 7273359
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| |||| |||||||||||  |||||| ||||||| ||||||||||| | |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  7273242 agagtgatgatgcatgtaccaccccatgtggtaatacactctttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagata 7273341  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||| ||||||||||    
T  7273342 aagtgtgattgtgagatg 7273359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 30014534 - 30014419
Alignment:
Q  100 agtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaa 199  Q
    |||| ||||||||||| ||||  |||||||||||||| ||||||| ||| | |||||||||||| |||| ||| ||||||||| | ||||||||||||||    
T  30014534 agtgatgatacatgtatcaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggtaacttggaccccatataaatagaagataaa 30014435  T
Q  200 gtgtggttgtgagatg 215  Q
    || |||||||||||||    
T  30014434 gtatggttgtgagatg 30014419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 27441735 - 27441662
Alignment:
Q  98 agagtggtgatacatgtac-caccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||| ||||  ||||||||||||||   ||||||||| ||||||| ||||||||||||||    
T  27441735 agagtggtgatacatgtacacaccc-atgtggcaatacacctcttacacccacataaaatcctgacatgtggcaa 27441662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 33242595 - 33242523
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  33242595 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 33242523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 33254118 - 33254034
Alignment:
Q  88 tatatata-atagagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||| ||||||||||||||||||||| ||||  ||||||||||||||  |||| ||||| | ||||| | ||||||||||||    
T  33254118 tatatatatatagagtggtgatacatgtac-acctccatgtggcaatacaccttttatacccacacaaaatccggacatgtggcaa 33254034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 27893750 - 27893866
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||    
T  27893750 gagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagataa 27893849  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  27893850 agtgtggttgtgagatg 27893866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 27550502 - 27550385
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  27550502 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccacataaatagaagata 27550403  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||||||||||| |||||    
T  27550402 aagtgtggttgtaagatg 27550385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 23036174 - 23036056
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||| ||||||||||||||||  ||||||||| |||  ||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||    
T  23036174 tagagtgatgatacatgtaccaccccatgtggcaacacatcctttacacccacacaaaattctgacacgtggcaacctggaccccacataaatagaagat 23036075  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  23036074 aaagtgtggttgtgagatg 23036056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 27864757 - 27864640
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||||| || ||| |||||||| |||||||| |||    
T  27864757 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacatccacataaaattctgacatgtggtaatctgaaccccacataaatagaaaata 27864658  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  27864657 aagtgtggttgtgagatg 27864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 55966253 - 55966370
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||| |||||||||||||| ||||||| || ||||||||| ||||||||||||    
T  55966253 agagtggtgatacatgtaccactccatgtggcaatacaccctttacacccacataaaattctgacaggtggcaatctagaccccacataaatagaagata 55966352  T
Q  198 aagtgtggttgtgagatg 215  Q
    || |||||||||||||||    
T  55966353 aattgtggttgtgagatg 55966370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43514594 - 43514710
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||||    
T  43514594 gagtgatgatacatgtaccaccccatgtggcaatacactctttacatccacaaaaaattctgacacgtggcaacctagaccccacacaaatagaagataa 43514693  T
Q  199 agtgtggttgtgagatg 215  Q
     ||||||||||||||||    
T  43514694 ggtgtggttgtgagatg 43514710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 1771173 - 1771290
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||| | |||||||| ||||||||||| ||||||||||||    
T  1771173 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgagacgtggcaacttggaccccacataaatagaagata 1771272  T
Q  198 aagtgtggttgtgagatg 215  Q
    || |||||||||||||||    
T  1771273 aaatgtggttgtgagatg 1771290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 28982729 - 28982846
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  ||||||||||||||  |||||| ||| | |||||||||||| |||||||| ||||||||||||||||||||||||    
T  28982729 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 28982828  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||| ||||||||||||    
T  28982829 aagtgcggttgtgagatg 28982846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 48463361 - 48463474
Alignment:
Q  102 tggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagt 201  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||| |||||||    
T  48463361 tggtgatacatgtaccactctatgtggcaatacaccctttacacccacataaaattctgacatgtggtaatctgaaccccacataaatagaaaataaagt 48463460  T
Q  202 gtggttgtgagatg 215  Q
     |||||||||||||    
T  48463461 atggttgtgagatg 48463474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 23204686 - 23204798
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||| |||||| |  ||||||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23204686 gagtgatgatacacgtaccatcccatgtggcaatatatcctttacacccacataaaattctgacatgtggcaacctggaccccacataaatagaagataa 23204785  T
Q  199 agtgtggttgtga 211  Q
    |||||||||||||    
T  23204786 agtgtggttgtga 23204798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 33703333 - 33703217
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  || ||||||||||| ||||||||||| | |||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  33703333 gagtgatgatacatgtaccaccccatatggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggatcccgcacaaatagaagataa 33703234  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  33703233 agtgtggttgtgagatg 33703217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 35017924 - 35017808
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||   |||||| ||| | |||||||||||| |||||||| |||||||||||||||||||||||||    
T  35017924 gagtgatgatacatgtaccaccccatgtggcaatacatcttttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataa 35017825  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  35017824 agtgtggttgtgagatg 35017808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 31681096 - 31680978
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||||||||||||||| || |  |||||||||||||| ||||||||| | |||||||||||||| ||||||| ||  |||||||| |||||||||||    
T  31681096 tagagtggtgatacatgtagcatcccatgtggcaatacaccctttacacctacataaaattctgacacgtggcaatctaaaccccacataaatagaagat 31680997  T
Q  197 aaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||    
T  31680996 aaagtgtggttgtgagatg 31680978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 43735935 - 43735818
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  | |||||||||||| ||||||| ||| |||||||||||||| ||| |||| |||| |||||||||||||||||||    
T  43735935 agagtgatgatacatgtaccaccccacgtggcaatacaccctttacatccacataaaattctgacacgtgacaacttggatcccacacaaatagaagata 43735836  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||| ||||||||||    
T  43735835 aagtgtgattgtgagatg 43735818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43949709 - 43949825
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||| ||||||| |||||||||||| ||||||   |||| ||| ||||||||||||||||    
T  43949709 gagtgatgatacatgtaccaccctatttggcaatacaccctttatacccatacaaaattctgacacgtggcatattggatcccgcacaaatagaagataa 43949808  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  43949809 agtgtggttgtgagatg 43949825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 28988665 - 28988549
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||  ||| ||||| |||||||| | |||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |    
T  28988665 agagtggtgatacatgtacaccctcatgtgacaatacaccccttac-ctcatacaaaattctgacatatggcaacctggaccccacacaaatagaagaga 28988567  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||||||||| |||||||    
T  28988566 aagtgtggttatgagatg 28988549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 25051885 - 25051769
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  | |||||||||||   |||||| ||| | |||||||||||| |||||||| ||||||||||| |||||||||||||    
T  25051885 gagtgatgatacatgtaccaccccacgtggcaatacatcatttacatccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataa 25051786  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||| ||||||||||    
T  25051785 agtgtgattgtgagatg 25051769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 41327449 - 41327567
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    |||||| |||||||||||||  | | || ||||||||||| | |||||| || | |||||||| ||||||||||||||||||||||||||||| |||||     
T  41327449 tagagtagtgatacatgtacatcttaatctggcaatacaccccttacactcacaaaaaattctaacatgtggcaacctggaccccacacaaattgaagag 41327548  T
Q  197 aaagtgtggttgtgagatg 215  Q
    ||||||||| |||||||||    
T  41327549 aaagtgtggatgtgagatg 41327567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 45490225 - 45490337
Alignment:
Q  103 ggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtg 202  Q
    |||||||||||||  ||| |||||||||||| |   |||||||||| | || ||||||||| ||||||||||||| |||  |||||||||||||||||||    
T  45490225 ggtgatacatgtagtaccctatgtggcaatatatcatttacacccacacaagattctgacacgtggcaacctggatcccgtacaaatagaagataaagtg 45490324  T
Q  203 tggttgtgagatg 215  Q
    |||||||||||||    
T  45490325 tggttgtgagatg 45490337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 51512173 - 51512281
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  | |||||||||||   || | ||||| | |||||||||||| |||||||||||||||||||||||||| |||||||    
T  51512173 gagtgatgatacatgtaccaccccacgtggcaatacatctttaatacccacacaaaattctgacacgtggcaacctggaccccacacaaataaaagataa 51512272  T
Q  199 agtgtggtt 207  Q
    |||||||||    
T  51512273 agtgtggtt 51512281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 21687199 - 21687082
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||| |||||||| | ||||||||||||||  |||||||  || | |||||||||||| ||||||||||| || ||| ||||||||||||||    
T  21687199 agagtgatgatatatgtaccaacctatgtggcaatacattctttacattcacacaaaattctgacacgtggcaacctgaactccagacaaatagaagata 21687100  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||| ||||| |||||||    
T  21687099 aagtatggttatgagatg 21687082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 41848158 - 41848047
Alignment:
Q  104 gtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgt 203  Q
    |||||||||||||  ||  |||||||||||||| | ||||| |||   |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||    
T  41848158 gtgatacatgtacacccccatgtggcaatacaccccttacatccacgcaaaattctgacatgtgacaatctgaaccccacacaaatagaagagaaagtgt 41848059  T
Q  204 ggttgtgagatg 215  Q
    ||||||| ||||    
T  41848058 ggttgtgcgatg 41848047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 56215804 - 56215920
Alignment:
Q  97 tagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagat 196  Q
    ||||||||||||||||||||  |   ||||||| ||||||   ||||||||| | ||||||||||||| | ||||||| |||||||||||||||| |||     
T  56215804 tagagtggtgatacatgtacaccaccatgtggccatacacctcttacacccacacaaaattctgacatatagcaacctagaccccacacaaatag-agag 56215902  T
Q  197 aaagtgtggttgtgagat 214  Q
    ||||||||||||||||||    
T  56215903 aaagtgtggttgtgagat 56215920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 39631269 - 39631177
Alignment:
Q  123 atgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    ||||| |||||||  ||||||||||| | |||||||||||| ||| ||   || |||||||||||||||||||||||||||||||||||||||    
T  39631269 atgtgacaatacatcctttacacccacacaaaattctgacacgtgacatattgaaccccacacaaatagaagataaagtgtggttgtgagatg 39631177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 41878592 - 41878482
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||||||||||||||||||||| |       |||||| ||||||||| | | |||||||||||| ||| ||| ||||||||||||||||||||||| |    
T  41878592 agagtggtgatacatgtaccacctga-------atacactctttacaccaacacaaaattctgacacgtgacaatctggaccccacacaaatagaagaga 41878500  T
Q  198 aagtgtggttgtgagatg 215  Q
    | || |||||||||||||    
T  41878499 aggtttggttgtgagatg 41878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 12497142 - 12497032
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||| ||||||  ||||| ||||||||  |||||||||| | |||||||| ||| |||||||  || ||| ||||||||||||||||||||||||    
T  12497142 tgatacatgcaccaccccatgtgacaatacacgttttacacccacacaaaattctaacacgtggcaaattgaacctcacacaaatagaagataaagtgtg 12497043  T
Q  205 gttgtgagatg 215  Q
     |||| |||||    
T  12497042 attgtaagatg 12497032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 27316617 - 27316737
Alignment:
Q  96 atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaa-ttctgacatgtggcaacctggaccccacacaaatagaag 194  Q
    |||||||| |||||||| || || |  ||||| |||||||| ||||||| ||| | |||| |||||||| |||||||| ||||| ||| | |||||||||    
T  27316617 atagagtgatgatacatttatcatcccatgtgacaatacaccctttacatccacacaaaaattctgacacgtggcaacttggactccaaataaatagaag 27316716  T
Q  195 ataaagtgtggttgtgagatg 215  Q
    ||||||||||||| |||||||    
T  27316717 ataaagtgtggttatgagatg 27316737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 46412389 - 46412491
Alignment:
Q  111 atgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtg 210  Q
    |||||||||| ||| || ||||| ||  |||||| | | | |||||||||||| |||||||  |  |||||||| |||||||||||||||||||||||||    
T  46412389 atgtaccaccctatatgacaatatactttttacatctacacaaaattctgacacgtggcaatttaaaccccacataaatagaagataaagtgtggttgtg 46412488  T
Q  211 aga 213  Q
    |||    
T  46412489 aga 46412491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 19880147 - 19880074
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  19880147 agagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 19880074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 55272284 - 55272356
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  55272284 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 55272356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 3756156 - 3756232
Alignment:
Q  95 aatagagtggtgatacatgtaccaccttatgtggcaatacacact-ttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||||||   |  ||||||||||||| ||| ||||||||| |||||||  |||||||||||||    
T  3756156 aatagagtggtgatacatgtacactcccatgtggcaataca-actcttacacccacataaaatcatgacatgtggcaa 3756232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 4764631 - 4764750
Alignment:
Q  96 atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaaga 195  Q
    |||||||| ||||||||||||||||| ||||||||||||||  |||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  4764631 atagagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaaga 4764730  T
Q  196 taaagtgtggttgtgagatg 215  Q
    ||||||||||||||||||||    
T  4764731 taaagtgtggttgtgagatg 4764750  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 19047350 - 19047233
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||    
T  19047350 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 19047251  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  19047250 aagtgtggttgtgagatg 19047233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 30838825 - 30838708
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  ||||||||||||||  |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||    
T  30838825 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacacctacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 30838726  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  30838725 aagtgtggttgtgagatg 30838708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 43490308 - 43490425
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| || |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||    
T  43490308 agagtgatgctacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacataaatagaagata 43490407  T
Q  198 aagtgtggttgtgagatg 215  Q
    |||||||||| |||||||    
T  43490408 aagtgtggttatgagatg 43490425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 42849754 - 42849882
Alignment:
Q  87 atatatata-atagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacac 185  Q
    ||||||||| ||| |||| ||||||||||||||||  |||||||||||||| ||||||||||| | |||||||||||| |||||||| ||||||||||||    
T  42849754 atatatatatatatagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacac 42849853  T
Q  186 aaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||| |||||||||||||||||||||    
T  42849854 aaatagaa-ataaagtgtggttgtgagatg 42849882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 1750606 - 1750490
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||  |||||||||  ||||||||| |||| |||||||| || | |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  1750606 gagtgatgatatttgtaccaccccatgtggcaacacaccctttacactcacacaaaattctgacacgtggcaatctggaccccacacaaatagaagataa 1750507  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  1750506 agtgtggttgtgagatg 1750490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 16096940 - 16096824
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctgga-ccccacacaaatagaagata 197  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||||||||| | |||||||||||| |||||||| | || ||||||| || |||||||||    
T  16096940 gagtgatgatacatgtaccacatcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttagacccccacataagtagaagata 16096841  T
Q  198 aagtgtggttgtgagat 214  Q
    |||||||||||||||||    
T  16096840 aagtgtggttgtgagat 16096824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43335671 - 43335787
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  ||||||||||| ||  |||||| ||| | |||||||||||| ||||||||||||| |||||| |||||||||||||    
T  43335671 gagtgatgatacatgtaccaccccatgtggcaatataccttttacatccacacaaaattctgacacgtggcaacctggatcccacataaatagaagataa 43335770  T
Q  199 agtgtggttgtgagatg 215  Q
    ||||| |||||||||||    
T  43335771 agtgtagttgtgagatg 43335787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 13780676 - 13780759
Alignment:
Q  132 tacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  13780676 tacaccctttacacctatacaaaattctgacatgtggcaacctggaccccacataaatagaagagaaagtgtggttgtgagatg 13780759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 12302167 - 12302277
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||||| ||||  |||||||||||||  ||||||| ||| | ||||||||||||  ||| ||||||||||||||| |||||||||||||||||||    
T  12302167 tgatacatgtatcaccccatgtggcaatacatcctttacatccacacaaaattctgacacatggtaacctggaccccacataaatagaagataaagtgtg 12302266  T
Q  205 gttgtgagatg 215  Q
    |||||||||||    
T  12302267 gttgtgagatg 12302277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 34817683 - 34817800
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||  ||  |||||||||| | | | ||||||||||| |||||||||||||||||||||||||| |||  |||||||||||| |    
T  34817683 agagtgatgatacatgtacacccccatgtggcaatgctccccttacacccatacaaaattctgacatgtggcaacctggatcccgtacaaatagaagaga 34817782  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  34817783 aagtgtggttgtgagatg 34817800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 42026937 - 42026845
Alignment:
Q  123 atgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||||||||| | ||||||||| | ||||||||||||| | ||||||| |||||||||||||||||| | ||||||| |||||||||||    
T  42026937 atgtggcaatacaccccttacacccacacaaaattctgacatcttgcaacctagaccccacacaaatagaaaagaaagtgtagttgtgagatg 42026845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 8896544 - 8896607
Alignment:
Q  152 aaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtggttgtgagatg 215  Q
    |||||||||||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||||    
T  8896544 aaaattctgacatgtggcaacctgaacctcacacaaatagaaaagaaagtgtgattgtgagatg 8896607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 39149197 - 39149316
Alignment:
Q  94 taatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaa 193  Q
    |||||||||| ||||||||||||||||  |||||| |||||||  |||||||||| | |||||| ||| | |||| ||  | ||||| ||||||||| ||    
T  39149197 taatagagtgatgatacatgtaccaccc-atgtggtaatacaccttttacacccacacaaaattatgagacgtggtaatttagaccc-acacaaataaaa 39149294  T
Q  194 gataaagtgtggttgtgagatg 215  Q
    |||||||||| |||||| ||||    
T  39149295 gataaagtgtagttgtgggatg 39149316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 34895648 - 34895721
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  34895648 agagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 34895721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 11825562 - 11825634
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| ||||||||||||||    
T  11825562 gagtggtgatacatgtacatccccatgtggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 11825634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 16804160 - 16804088
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  || ||| || ||||||||   ||||||||| | ||||||||||||||||||||    
T  16804160 gagtggtgatacatgtacacccctatatgacaatacacctcttacacccacacaaaattctgacatgtggcaa 16804088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 16843442 - 16843370
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  || ||| || ||||||||   ||||||||| | ||||||||||||||||||||    
T  16843442 gagtggtgatacatgtacacccctatatgacaatacacctcttacacccacacaaaattctgacatgtggcaa 16843370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 43114749 - 43114677
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||| ||||||||||||||   ||||||||| | ||||| |||||| |||||||    
T  43114749 gagtggtgatacatgtacaccctcatgtggcaatacacctcttacacccacacaaaatcctgacaagtggcaa 43114677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 6518401 - 6518474
Alignment:
Q  98 agagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||| ||||  ||||| ||||||||  |||||||||| | ||||| ||||||||||||||    
T  6518401 agagtggtgatacatgtac-acctccatgtgtcaatacaccttttacacccacacaaaatcctgacatgtggcaa 6518474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 18491907 - 18491825
Alignment:
Q  89 atatataatagagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||| || |||||||||||||||||||  ||  ||||||||||||||   ||||||||| | ||||| || |||||||||||    
T  18491907 atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctaacatgtggcaa 18491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 4299328 - 4299400
Alignment:
Q  99 gagtggtgatacatgtaccacctt-atgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||| |||||| |||||||||||||    ||||||||| | ||||| ||||||||||||||    
T  4299328 gagtggtgatacatgta-caccttcatgtggcaatacatctcttacacccacacaaaatcctgacatgtggcaa 4299400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 41281881 - 41281954
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    |||||||||||||||||||  ||  || |||||||||||   ||||||||| | ||||| ||||||||||||||    
T  41281881 agagtggtgatacatgtacacccccatatggcaatacacctcttacacccacacaaaatcctgacatgtggcaa 41281954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 966742 - 966814
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||  ||  |||||| |||||||   ||||||||| | ||||| ||||||||||||||    
T  966742 gagtggtgatacatgtacatccccatgtggaaatacacctcttacacccacacaaaatcctgacatgtggcaa 966814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 878 - 761
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||| ||||||| ||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||    
T  878 agagcggtgatatatgtaccacctcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 779  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  778 aagtgtggttgtgagatg 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 112848 - 112731
Alignment:
Q  98 agagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagata 197  Q
    |||||| ||||||||||||||||  |||||||||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||    
T  112848 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 112749  T
Q  198 aagtgtggttgtgagatg 215  Q
    ||||||||||||||||||    
T  112748 aagtgtggttgtgagatg 112731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 14097 - 14212
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||| ||| | |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  14097 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgga-cccacacaaatagaagataa 14195  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  14196 agtgtggttgtgagatg 14212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 24425 - 24540
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||| ||| | |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  24425 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgga-cccacacaaatagaagataa 24523  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  24524 agtgtggttgtgagatg 24540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 11443 - 11327
Alignment:
Q  99 gagtggtgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataa 198  Q
    ||||| |||||||||||||| |  ||||||||||||||  |||||||| | | |||||||||||| || ||||| |||||||||||  ||||||||||||    
T  11443 gagtgatgatacatgtaccatcccatgtggcaatacactatttacacctacacaaaattctgacacgtagcaacttggaccccacatcaatagaagataa 11344  T
Q  199 agtgtggttgtgagatg 215  Q
    |||||||||||||||||    
T  11343 agtgtggttgtgagatg 11327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 23335 - 23445
Alignment:
Q  105 tgatacatgtaccaccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaacctggaccccacacaaatagaagataaagtgtg 204  Q
    ||||||||| ||||||  ||||| ||||||||  |||||||||| | |||||||| ||| |||||||  || ||| ||||||||||||||||||||||||    
T  23335 tgatacatgcaccaccccatgtgacaatacacgttttacacccacacaaaattctaacacgtggcaaattgaacctcacacaaatagaagataaagtgtg 23434  T
Q  205 gttgtgagatg 215  Q
     |||| |||||    
T  23435 attgtaagatg 23445  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 45626 - 45699
Alignment:
Q  98 agagtggtgatacatgtac-caccttatgtggcaatacacactttacacccatataaaattctgacatgtggcaa 171  Q
    ||||||||||||||||||| ||||  ||||||||||||||   ||||||||| ||||||| ||||||||||||||    
T  45626 agagtggtgatacatgtacacaccc-atgtggcaatacacctcttacacccacataaaatcctgacatgtggcaa 45699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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