View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1462_low_12 (Length: 206)
Name: NF1462_low_12
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1462_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 2326256 - 2326104
Alignment:
| Q |
33 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
132 |
Q |
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| T |
2326256 |
ttttgaacgagggcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
2326157 |
T |
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| Q |
133 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatg |
185 |
Q |
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| T |
2326156 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatg |
2326104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 2329988 - 2329823
Alignment:
| Q |
16 |
cagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgatagg |
115 |
Q |
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| T |
2329988 |
cagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgatagg |
2329889 |
T |
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| Q |
116 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
181 |
Q |
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| T |
2329888 |
accatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattg |
2329823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 2293099 - 2292934
Alignment:
| Q |
16 |
cagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgatagg |
115 |
Q |
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| T |
2293099 |
cagagaagatggatgagttttgaacgagaacatggtgggccagagtatggtcgttaatgaaaatggaaggtcgagaaccgatatggacagtgatgatagg |
2293000 |
T |
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| Q |
116 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
181 |
Q |
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| T |
2292999 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2292934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 2320405 - 2320254
Alignment:
| Q |
30 |
gagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcat |
129 |
Q |
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| T |
2320405 |
gagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttggcat |
2320306 |
T |
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| Q |
130 |
ggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
181 |
Q |
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| T |
2320305 |
ggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2320254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 2302704 - 2302558
Alignment:
| Q |
30 |
gagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcat |
129 |
Q |
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| T |
2302704 |
gagttttgaacgagaacatggtgggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagtgatgataggaccatgtttggcat |
2302605 |
T |
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| Q |
130 |
ggagagttttgagaaaaggttcaagttgggaaaatgattttcggagc |
176 |
Q |
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| T |
2302604 |
ggagagttttgagaaaaggttcaagttgggaggatggttttcggagc |
2302558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 2309416 - 2309265
Alignment:
| Q |
30 |
gagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcat |
129 |
Q |
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||||||||||||||| | ||||| ||||||||| ||||| |||| ||||||||||| || ||||||| | | |||||||||||||||||||||||| |
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| T |
2309416 |
gagttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatgatgataggaccatgtttggcat |
2309317 |
T |
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| Q |
130 |
ggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattg |
181 |
Q |
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| T |
2309316 |
ggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattg |
2309265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 2350288 - 2350125
Alignment:
| Q |
16 |
cagagaagacggaggagttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgatagg |
115 |
Q |
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||||||||| || |||||||||||||||||||||||||| |||| | ||||||||||| |||||||||||| | | | ||| || ||| |||||||||| |
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| T |
2350288 |
cagagaagatggctgagttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgatagg |
2350189 |
T |
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| Q |
116 |
accatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccat |
179 |
Q |
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| T |
2350188 |
accatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccat |
2350125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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