View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1462_low_2 (Length: 482)
Name: NF1462_low_2
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1462_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 29201017 - 29201391
Alignment:
| Q |
4 |
gctggtggtcctaccggactgtccaagcccaagcctgattcaatcagcaacactctacccttctcctcgacagttgcagtaacagttcaagtttcattgc |
103 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
29201017 |
gctggcggtcctaccggactgtccaagcccaagcttgattcaatcagcagcactctacccttctcctcgactgttgcaggcacagttcaagttttattgc |
29201116 |
T |
|
| Q |
104 |
atagtgatacaataaagaggcctttatcaagtgatgggcgtaatagtataatgcctggagccaaaaataattgtgctgatgtcctggcgaatgggggcca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29201117 |
atagtgatacaataaagaggcctttatcaagtgatgggcgtaatagtataatgcctggagccaaaaataattgtgctgttgtcctggcgaatgggggcca |
29201216 |
T |
|
| Q |
204 |
aaaaacattggcctctgatgttactctcttgcttatgtgaatttgagcacccaactgtcttctattatttgcaggcttcatatcgtgtaaaattgacaag |
303 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29201217 |
aaaaacattggcttctgatgttactctcttgcttctgtgaatttgagcacccaactgtcttctattatttgcaggcttcatatcgtgtaaaattgacaat |
29201316 |
T |
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| Q |
304 |
atctgctccaagagttgctcaaaaggaagggacacaaattttacataaagtataatttttaacatccgagacttc |
378 |
Q |
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| T |
29201317 |
atctgctccaagagttgctcaaaaggaagggacacaaattttacataaagtataatttttaacatccgagacttc |
29201391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 29201418 - 29201454
Alignment:
| Q |
379 |
aactatcttgacttgaggattctgtttctttggttca |
415 |
Q |
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| T |
29201418 |
aactatcttgacttgaggatgctgtttctttggttca |
29201454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 39656712 - 39656491
Alignment:
| Q |
4 |
gctggtggtcctaccggactgtccaagcccaagcctgattcaatcagcaacactctacccttctcctcgacagttgcagtaacagttcaagtttcattgc |
103 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||| ||||||||||||||||||| |
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| T |
39656712 |
gctggcggtccaaccggactatccaagcccaagcctgattcaatcagcagcactctacctttctcctcggctgttgcaggcacagttcaagtttcattgc |
39656613 |
T |
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| Q |
104 |
atagtgatacaataaagaggcctttatcaagtgatgggcgtaatagtataatgcctggagccaaaaataattgtgctgatgtcctggcgaatgggggcca |
203 |
Q |
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| T |
39656612 |
agagtgatacaatgaagaggcctttgtcaagtgatgggcgtcatagtataatgcctggagccaaaaataattgtgtggatgtcctggcgaatgtgggcga |
39656513 |
T |
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| Q |
204 |
aaaaacattggcctctgatgtt |
225 |
Q |
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||||||| |||| ||||||||| |
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| T |
39656512 |
aaaaacactggcttctgatgtt |
39656491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 6322745 - 6322836
Alignment:
| Q |
268 |
ttatttgcaggcttcatatcgtgtaaaattgacaagatctgctccaagagttgctcaaaaggaagggacacaaattttacataaagtataat |
359 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
6322745 |
ttatttgcaggcttcatatcgtgtaaaagtgacaagatctgctccaagagttgctcaaaaggaaggggcacaaattttacagaaagtataat |
6322836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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