View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1462_low_4 (Length: 366)

Name: NF1462_low_4
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1462_low_4
NF1462_low_4
[»] chr2 (9 HSPs)
chr2 (3-351)||(821416-821764)
chr2 (229-349)||(973652-973772)
chr2 (218-349)||(410562-410693)
chr2 (120-197)||(957656-957733)
chr2 (316-350)||(957809-957843)
chr2 (304-348)||(1400098-1400142)
chr2 (308-349)||(965166-965207)
chr2 (5-65)||(962423-962483)
chr2 (304-348)||(1403819-1403863)
[»] chr3 (1 HSPs)
chr3 (113-348)||(45810009-45810243)
[»] chr1 (2 HSPs)
chr1 (216-346)||(48675085-48675215)
chr1 (197-346)||(22068491-22068639)
[»] chr6 (2 HSPs)
chr6 (5-66)||(10114621-10114682)
chr6 (197-348)||(10116363-10116510)
[»] chr7 (1 HSPs)
chr7 (223-349)||(12105592-12105718)
[»] chr5 (1 HSPs)
chr5 (188-240)||(36199516-36199569)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 821764 - 821416
Alignment:
Q  3 aaaatagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttagga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821764 aaaatagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttagga 821665  T
Q  103 cgactttcataacagcacatatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatactta 202  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821664 cgactttcataacagcacatatttcataaaaccaccaaatcgaacagtttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatactta 821565  T
Q  203 cataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgc 302  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  821564 cataatcgtatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgc 821465  T
Q  303 tccagattgtcatagtttctaaaactctcgcattcttcagaataaatat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  821464 tccagattgtcatagtttctaaaactctcgcattcttcagaataaatat 821416  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 973652 - 973772
Alignment:
Q  229 tgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttctaaaact 328  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||| |||||||    
T  973652 tgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagtttgtaaaact 973751  T
Q  329 ctcgcattcttcagaataaat 349  Q
    || || |||| ||||||||||    
T  973752 cttgcgttctccagaataaat 973772  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 410693 - 410562
Alignment:
Q  218 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatag 317  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || | | ||||| ||||||| | |||| |||||||    
T  410693 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 410594  T
Q  318 tttctaaaactctcgcattcttcagaataaat 349  Q
    ||  ||||||||| |||||||| |||||||||    
T  410593 ttcgtaaaactcttgcattctttagaataaat 410562  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 957656 - 957733
Alignment:
Q  120 catatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataat 197  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||  |||| |||||| || |||||||  ||||||||    
T  957656 catagttcatcaaaccactaaatccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaaataat 957733  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 957809 - 957843
Alignment:
Q  316 agtttctaaaactctcgcattcttcagaataaata 350  Q
    |||||||||||||||||||||||||||||||||||    
T  957809 agtttctaaaactctcgcattcttcagaataaata 957843  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 1400142 - 1400098
Alignment:
Q  304 ccagattgtcatagtttctaaaactctcgcattcttcagaataaa 348  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||    
T  1400142 ccagattggcatagtttctaaaactcttgcattctgcagaataaa 1400098  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 965166 - 965207
Alignment:
Q  308 attgtcatagtttctaaaactctcgcattcttcagaataaat 349  Q
    |||| |||||||||||||||||| ||||||| ||||||||||    
T  965166 attgacatagtttctaaaactcttgcattctccagaataaat 965207  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 962423 - 962483
Alignment:
Q  5 aatagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaa 65  Q
    |||||||||||||||| | | ||||||||||| ||||||||| |  | |||||||||||||    
T  962423 aatagaaatagaagaggagttaaaagatttcaatactcataacttccgtgcattaaataaa 962483  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 1403863 - 1403819
Alignment:
Q  304 ccagattgtcatagtttctaaaactctcgcattcttcagaataaa 348  Q
    |||||||| |||||||||||||||||| ||||| | |||||||||    
T  1403863 ccagattgacatagtttctaaaactcttgcattatccagaataaa 1403819  T

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Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 113 - 348
Target Start/End: Original strand, 45810009 - 45810243
Alignment:
Q  113 aacagcacatatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatacttacataatcata 212  Q
    ||||||||| | ||||||||||  ||||||| |||||||||| ||||||||  |||| |||||| ||||||||||  |||||| |||||||||| |||||    
T  45810009 aacagcacacagttcatcaaacagccaaatccaacaatttcaaggtagaagctaatgaaacaaaggagagaatagagaaaatactacttacata-tcata 45810107  T
Q  213 tatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgt 312  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||| |  ||||||||| | |  ||||  || ||| ||| |||||    
T  45810108 tatgttatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgt 45810207  T
Q  313 catagtttctaaaactctcgcattcttcagaataaa 348  Q
    |||||||||||||||| | |||||||||||||||||    
T  45810208 catagtttctaaaacttttgcattcttcagaataaa 45810243  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 48675085 - 48675215
Alignment:
Q  216 gttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcat 315  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||  ||||||   |||||||||| |  ||| |  |||| |||||| ||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  316 agtttctaaaactctcgcattcttcagaata 346  Q
    ||||| ||||||| | ||||| || ||||||    
T  48675185 agtttgtaaaacttttgcattatttagaata 48675215  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 22068639 - 22068491
Alignment:
Q  197 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 296  Q
    |||||||||| || || ||| ||||| |||| | |||||| |||||||| ||||||| ||||||||| ||| |||   ||||||||||||  ||||| |     
T  22068639 tacttacatagtc-taaatgctatcactaaactaaaagttcacatgttgtagaagcctttgggcatgcagacaattttctttctatttcaggttgttcac 22068541  T
Q  297 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaata 346  Q
    |  ||||||| ||| ||||  ||||||||  ||||| |||||||| ||||    
T  22068540 ttctgctccaaattatcatgatttctaaatttctcgaattcttcaaaata 22068491  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 10114621 - 10114682
Alignment:
Q  5 aatagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaa 66  Q
    |||||||||||||||| | ||||||||||||||||||||||||||  |||||||||| ||||    
T  10114621 aatagaaatagaagaggagtgaaaagatttcactactcataagtcttttgcattaaaaaaaa 10114682  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 10116363 - 10116510
Alignment:
Q  197 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 296  Q
    |||||||||||||||||||||| | |||    |||||||| |||||||| |||||||||||| ||||  |||||    |||||||||| | |  ||||      
T  10116363 tacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcc 10116458  T
Q  297 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaa 348  Q
     |   | |||||||| ||||||||||||||||||||||||||  ||||||||    
T  10116459 cgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaa 10116510  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 12105718 - 12105592
Alignment:
Q  223 ataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttct 322  Q
    ||||| |||||||||||||||||||||||| ||||  || |  | |||||| |||||||||||| | |||||   |  || |||||||| |||| |||||    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  323 aaaactctcgcattcttcagaataaat 349  Q
    |||||| | | ||||||||||||||||    
T  12105618 aaaactgttgaattcttcagaataaat 12105592  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 36199569 - 36199516
Alignment:
Q  188 gaaaaataatacttacata-atcatatatgttatcaataaaatgaaagttgaca 240  Q
    ||||| || |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  36199569 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgaca 36199516  T

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