View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1462_low_6 (Length: 290)
Name: NF1462_low_6
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1462_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 45550303 - 45550086
Alignment:
| Q |
28 |
cacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcc |
127 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45550303 |
cactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcc |
45550204 |
T |
|
| Q |
128 |
tgctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaacggaagtttccgannnnnnnaga |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
45550203 |
tgctgaggcatatactcttcccaattatcaaatcaaagacactgatccaagtggggaaggtgagtaagacaattcaac-gaagtttccgatttttttaga |
45550105 |
T |
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| Q |
228 |
ctcttcattatgtatcaat |
246 |
Q |
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||||||||||||||||||| |
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| T |
45550104 |
ctcttcattatgtatcaat |
45550086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 45549019 - 45548928
Alignment:
| Q |
17 |
agaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagtcatctgttg |
108 |
Q |
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| T |
45549019 |
agaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagccacctgttg |
45548928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 45545137 - 45545035
Alignment:
| Q |
23 |
aacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaatac |
122 |
Q |
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| T |
45545137 |
aacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtcaaaacctaccacagaaccaaaaatccagtcatatgttgctgacactgaatac |
45545038 |
T |
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| Q |
123 |
cct |
125 |
Q |
| |
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||| |
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| T |
45545037 |
cct |
45545035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 45549926 - 45549819
Alignment:
| Q |
28 |
cacttgaggaatctctagagagaatgaatgtgcatgatga---gccaaaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccc |
124 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||| |||| ||||||||| |
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| T |
45549926 |
cacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatctgttactgacactgaataccc |
45549827 |
T |
|
| Q |
125 |
tcctgctg |
132 |
Q |
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|||||||| |
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| T |
45549826 |
tcctgctg |
45549819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 45544230 - 45544125
Alignment:
| Q |
30 |
cttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccctc |
126 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| ||||| |||||||| ||| ||||||||||| ||| |||| ||||||||||||||| |
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| T |
45544230 |
cttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatcctaccactgaaacaaaaatccagccatttgttactgacattgaataccctt |
45544131 |
T |
|
| Q |
127 |
ctgctg |
132 |
Q |
| |
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|||||| |
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| T |
45544130 |
ctgctg |
45544125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 45549680 - 45549605
Alignment:
| Q |
130 |
ctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaac |
205 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||| | ||||||||| |
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| T |
45549680 |
ctgaggcatatactcttcccaattatcaaaccaaagacgctgattcaagtgggaaaggtgagtaggtcaattcaac |
45549605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 45550909 - 45550837
Alignment:
| Q |
132 |
gaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaa |
204 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| ||||||||| |||| | ||||||||| | |||||||| |
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| T |
45550909 |
gaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaa |
45550837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 45545685 - 45545621
Alignment:
| Q |
129 |
gctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagta |
193 |
Q |
| |
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||||||||||||||| |||||| ||| |||| |||||||||| ||||| || |||||||||||| |
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| T |
45545685 |
gctgaggcatatacttttcccacttaccaaaccaaagacactaatccaaatgaggaaggtgagta |
45545621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
| Q |
45 |
gagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatcca |
97 |
Q |
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|||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
19671100 |
gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca |
19671152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 36610142 - 36610184
Alignment:
| Q |
51 |
atgaatgtgcatgatgagccaaaacctaccacagaaccaaaaa |
93 |
Q |
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| T |
36610142 |
atgaatgtgcatgatgagcctaaacctacaacataaccaaaaa |
36610184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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