View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1462_low_9 (Length: 247)

Name: NF1462_low_9
Description: NF1462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1462_low_9
NF1462_low_9
[»] chr1 (8 HSPs)
chr1 (1-236)||(24340664-24340893)
chr1 (1-236)||(24353029-24353258)
chr1 (51-173)||(24310513-24310635)
chr1 (58-175)||(24416082-24416199)
chr1 (51-236)||(24323063-24323249)
chr1 (57-180)||(24367471-24367591)
chr1 (114-177)||(24369801-24369864)
chr1 (204-236)||(24310663-24310695)
[»] chr5 (4 HSPs)
chr5 (53-188)||(42561960-42562092)
chr5 (108-173)||(9120117-9120182)
chr5 (108-158)||(179412-179462)
chr5 (59-99)||(29712160-29712200)
[»] chr4 (25 HSPs)
chr4 (63-176)||(48852993-48853103)
chr4 (108-176)||(7878737-7878805)
chr4 (115-176)||(7790441-7790502)
chr4 (115-176)||(7908663-7908724)
chr4 (59-172)||(48863573-48863683)
chr4 (59-172)||(49040795-49040905)
chr4 (52-175)||(49038518-49038638)
chr4 (120-176)||(7771761-7771817)
chr4 (108-176)||(7773464-7773532)
chr4 (108-176)||(45371713-45371781)
chr4 (121-173)||(50666682-50666734)
chr4 (114-172)||(48156072-48156130)
chr4 (114-176)||(48864395-48864457)
chr4 (115-176)||(7813838-7813899)
chr4 (114-170)||(48147358-48147414)
chr4 (114-173)||(49043810-49043869)
chr4 (115-176)||(7786825-7786886)
chr4 (115-176)||(7800998-7801059)
chr4 (120-172)||(7237386-7237438)
chr4 (114-176)||(45384531-45384593)
chr4 (110-164)||(47208233-47208287)
chr4 (115-165)||(48903316-48903366)
chr4 (115-176)||(7766003-7766064)
chr4 (124-173)||(37826632-37826681)
chr4 (115-163)||(48861649-48861697)
[»] chr3 (3 HSPs)
chr3 (51-172)||(11015134-11015252)
chr3 (51-172)||(11005571-11005689)
chr3 (115-172)||(11024146-11024203)
[»] chr6 (2 HSPs)
chr6 (114-170)||(21016181-21016237)
chr6 (121-161)||(14197337-14197377)
[»] chr8 (2 HSPs)
chr8 (115-177)||(15349244-15349306)
chr8 (114-163)||(4031578-4031627)
[»] chr7 (1 HSPs)
chr7 (114-176)||(48884184-48884246)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24340664 - 24340893
Alignment:
Q  1 ttgtagagattcctctcccagatgatcttgatgttgaccatcgttatacggattgtggtttatgggtatttagaggatttctaagtctatgggttatggt 100  Q
    |||||||||||||||||||||||||| ||||      |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24340664 ttgtagagattcctctcccagatgattttga------ccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggttatggt 24340757  T
Q  101 ggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataat 200  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340758 ggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataat 24340857  T
Q  201 gtgtcccttgtatgttgtacaacaagtggtgatatt 236  Q
    || |||||||||||||||||||||||||||||||||    
T  24340858 gtttcccttgtatgttgtacaacaagtggtgatatt 24340893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24353029 - 24353258
Alignment:
Q  1 ttgtagagattcctctcccagatgatcttgatgttgaccatcgttatacggattgtggtttatgggtatttagaggatttctaagtctatgggttatggt 100  Q
    |||||||||||||||||||||||||| ||||      |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24353029 ttgtagagattcctctcccagatgattttga------ccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggttatggt 24353122  T
Q  101 ggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataat 200  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24353123 ggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataat 24353222  T
Q  201 gtgtcccttgtatgttgtacaacaagtggtgatatt 236  Q
    || |||||||||||||||||||||||||||||||||    
T  24353223 gtttcccttgtatgttgtacaacaagtggtgatatt 24353258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 24310513 - 24310635
Alignment:
Q  51 gattgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagt 150  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||  |||||||||||||| ||||||||||||||||||||||    
T  24310513 gattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagt 24310612  T
Q  151 catcttggactaaaactcttgtt 173  Q
    | ||||||| |||||||||||||    
T  24310613 cttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 24416082 - 24416199
Alignment:
Q  58 gtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttg 157  Q
    ||||||||||||||||||||||||| |||||||||||| ||  |  | ||||||  |||||||||||||| |||||||||||||||| ||||||||||||    
T  24416082 gtttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttg 24416181  T
Q  158 gactaaaactcttgttct 175  Q
    ||||||||||||||||||    
T  24416182 gactaaaactcttgttct 24416199  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 24323063 - 24323249
Alignment:
Q  51 gattgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggta----atgaaagaatacaaagtg 146  Q
    |||| ||||||||||||||||||||||||||  |||||||||||| ||| |||   || ||  ||||||||||||||     ||||||||||||||||||    
T  24323063 gattatggtttatgggtatttagaggatttcccagtctatgggttttggaggacttgggtaaagttgatatatgggtgggtgatgaaagaatacaaagtg 24323162  T
Q  147 cagtcatcttggactaaaactcttgttcttactacttatgataccattcataatgtgtcccttgtatgttgtacaacaagtggtgatatt 236  Q
    |||||||||| ||||||||||||||||||   |  ||    ||||||||||   || ||||||||||||||||||| |||||||||||||    
T  24323163 cagtcatcttcgactaaaactcttgttct---tgatttgcttaccattcatggcgtttcccttgtatgttgtacaaaaagtggtgatatt 24323249  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 24367471 - 24367591
Alignment:
Q  57 ggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatctt 156  Q
    |||||||||||||||||||||||||| |||||||||||| ||  ||| ||| ||||  || |||||||||||||| |||||||||||||||| || ||||    
T  24367471 ggtttatgggtatttagaggatttctcagtctatgggttttga-gga-gag-atacactttatatatgggtaatggaagaatacaaagtgcattcgtctt 24367567  T
Q  157 ggactaaaactcttgttcttacta 180  Q
    ||||||||||||||||||| ||||    
T  24367568 ggactaaaactcttgttctaacta 24367591  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 24369801 - 24369864
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctta 177  Q
    |||||||||||||| ||| || | ||   |||||| ||||||||||||||||||||||||||||    
T  24369801 gttgatatatgggtgatggaatagtatggagtgcattcatcttggactaaaactcttgttctta 24369864  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 24310663 - 24310695
Alignment:
Q  204 tcccttgtatgttgtacaacaagtggtgatatt 236  Q
    ||||||||||||||||||| |||||||||||||    
T  24310663 tcccttgtatgttgtacaaaaagtggtgatatt 24310695  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 42562092 - 42561960
Alignment:
Q  53 ttgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtca 152  Q
    ||||||||| |||||||||||||||||||| ||||||||| || ||  ||| ||  ||   |||||||||||||| |||||||||||||||||||| |||    
T  42562092 ttgtggtttttgggtatttagaggatttctcagtctatggattttgagggacgataat---gttgatatatgggtgatgaaagaatacaaagtgcattca 42561996  T
Q  153 tcttggactaaaactcttgttcttactacttatgat 188  Q
    ||||||||||| | |||||||||| ||| |||||||    
T  42561995 tcttggactaagattcttgttcttcctatttatgat 42561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 9120117 - 9120182
Alignment:
Q  108 gatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 173  Q
    ||||| ||||| |||||||| |||||||||||||||||||| || |||||||  ||||||||||||    
T  9120117 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 179412 - 179462
Alignment:
Q  108 gatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttgg 158  Q
    ||||| ||||| |||||||| |||||||||||||||||||| |||||||||    
T  179412 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 29712200 - 29712160
Alignment:
Q  59 tttatgggtatttagaggatttctaagtctatgggttatgg 99  Q
    |||||||||||||||||||| ||| |||||||||| |||||    
T  29712200 tttatgggtatttagaggatgtctcagtctatgggatatgg 29712160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 48852993 - 48853103
Alignment:
Q  63 tgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggacta 162  Q
    ||||||||||||| |||||||||| ||||||| |||| ||||||   ||| ||||| |||||||| |||||||||||||||||||  || ||||||||||    
T  48852993 tgggtatttagagaatttctaagtatatgggtcatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 48853089  T
Q  163 aaactcttgttctt 176  Q
    | ||||||||||||    
T  48853090 agactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 7878737 - 7878805
Alignment:
Q  108 gatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| ||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  7878737 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7790441 - 7790502
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7908663 - 7908724
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctt 7908724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 48863573 - 48863683
Alignment:
Q  59 tttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttgg 158  Q
    |||||||||||||||||||| ||| ||||||||||||  || |||| |   || |||||| |||||||| ||| ||||||||  |||||| |||||||||    
T  48863573 tttatgggtatttagaggatctctcagtctatgggtttcgggggatca---taaggttgacatatgggtgatggaagaatacggagtgcattcatcttgg 48863669  T
Q  159 actaaaactcttgt 172  Q
    | ||||||||||||    
T  48863670 attaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 49040905 - 49040795
Alignment:
Q  59 tttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttgg 158  Q
    |||||||||||||| ||||||||| ||||||||||||  || |||| |   |||||||||||||||||| ||| |||||||   |||||| |||||||||    
T  49040905 tttatgggtatttaaaggatttctcagtctatgggtttcgggggatca---tacggttgatatatgggtgatggaagaatatggagtgcattcatcttgg 49040809  T
Q  159 actaaaactcttgt 172  Q
    | ||||| ||||||    
T  49040808 attaaaattcttgt 49040795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 49038638 - 49038518
Alignment:
Q  52 attgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagtc 151  Q
    ||||| |||||||||||||| ||| |||||| ||| |||||| ||||| |  ||    ||| ||||| |||||||| ||||||||||||||||| || ||    
T  49038638 attgttgtttatgggtatttcgagaatttctcagtgtatgggctatggagcgtgc---taccgttgaaatatgggtgatgaaagaatacaaagttcattc 49038542  T
Q  152 atcttggactaaaactcttgttct 175  Q
     ||||||||||| |||||||||||    
T  49038541 gtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 7771761 - 7771817
Alignment:
Q  120 atatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||||||| |||||||||||||||||||| || || |||||||||||||||||||||    
T  7771761 atatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctt 7771817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 7773532 - 7773464
Alignment:
Q  108 gatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| ||||| |||||||| |||||||||||||||||||| || ||||||| |||| |||||||||||    
T  7773532 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctt 7773464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 45371781 - 45371713
Alignment:
Q  108 gatacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||| ||| ||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttctt 45371713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  121 tatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 173  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 48156130 - 48156072
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 172  Q
    ||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||||||    
T  48156130 gttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 48864395 - 48864457
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| |||||||| |||||||||||||||||||| || ||||||||||| | ||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttctt 48864457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7813838 - 7813899
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| ||||||||  ||||||||||||||||||| || ||||||| ||||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 48147414 - 48147358
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactctt 170  Q
    ||||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||    
T  48147414 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 49043869 - 49043810
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 173  Q
    ||||| |||||||| |||||||||||||||||||| || || |||||||| |||||||||    
T  49043869 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7786825 - 7786886
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| |||||||| |||||||||||||| ||||| | |||||||| ||| ||||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7800998 - 7801059
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| ||||||||  ||||||| ||||||||||| || ||||||| ||||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctt 7801059  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 7237438 - 7237386
Alignment:
Q  120 atatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 172  Q
    |||||||| ||||||||||||||| |||| || | ||||||||||||||||||    
T  7237438 atatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 45384593 - 45384531
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| |||||||| ||||||||||| |||||||| || |||||||| || |||| |||||||    
T  45384593 gttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttctt 45384531  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 47208233 - 47208287
Alignment:
Q  110 tacggttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaa 164  Q
    |||| |||| ||| |||| ||||||||||||||||| || |||||||||||||||    
T  47208233 tacgcttgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaaa 47208287  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 48903316 - 48903366
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaa 165  Q
    |||| |||||||| |||||||||||||||||||| |  |||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 7766003 - 7766064
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    |||| |||||||| |||||||||||||||||| | || || |||||||| || |||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  124 gggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 173  Q
    |||| ||||||||||||||| |||| || ||||||||||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 48861649 - 48861697
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaa 163  Q
    |||| ||||||||||| ||||||||||||||||| |  |||||||||||    
T  48861649 ttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 11015252 - 11015134
Alignment:
Q  51 gattgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagt 150  Q
    ||||||| ||| ||| ||||| ||| ||||||||||||||||| ||||| |||||  || || ||||| |||||||| |||||||||||||||||||| |    
T  11015252 gattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg--ga-acagttgaaatatgggttatgaaagaatacaaagtgcatt 11015156  T
Q  151 catcttggactaaaactcttgt 172  Q
    | ||||||  ||||||||||||    
T  11015155 cgtcttgggttaaaactcttgt 11015134  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 11005689 - 11005571
Alignment:
Q  51 gattgtggtttatgggtatttagaggatttctaagtctatgggttatggtggatgaggatacggttgatatatgggtaatgaaagaatacaaagtgcagt 150  Q
    ||||||| ||| ||| ||||| ||| |||||| |||||||||| ||||| ||||||    ||  |||| |||||||| |||||||||||||||||||| |    
T  11005689 gattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaa---acaattgaaatatgggttatgaaagaatacaaagtgcatt 11005593  T
Q  151 catcttggactaaaactcttgt 172  Q
    | |||||||||||  |||||||    
T  11005592 cgtcttggactaaggctcttgt 11005571  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 172  Q
    |||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 21016181 - 21016237
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactctt 170  Q
    ||||| |||||||| ||||||||||||||||| || || ||||||||||| ||||||    
T  21016181 gttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  121 tatgggtaatgaaagaatacaaagtgcagtcatcttggact 161  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 15349244 - 15349306
Alignment:
Q  115 ttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctta 177  Q
    |||| |||||||| |||||||||||||||||| | || |||||||| || | |||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctta 15349306  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 4031627 - 4031578
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaa 163  Q
    ||||| |||||||| ||||||||||||||| |||| || |||||||||||    
T  4031627 gttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaa 4031578  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 48884184 - 48884246
Alignment:
Q  114 gttgatatatgggtaatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctt 176  Q
    ||||| |||| ||| ||||||||||||||||||||    ||||||||||| ||||||||||||    
T  48884184 gttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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