View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_high_1 (Length: 643)

Name: NF14630_high_1
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_high_1
NF14630_high_1
[»] chr6 (9 HSPs)
chr6 (11-347)||(34616032-34616368)
chr6 (11-347)||(34743469-34743805)
chr6 (429-628)||(34616452-34616650)
chr6 (429-628)||(34743889-34744087)
chr6 (11-331)||(11544864-11545153)
chr6 (126-333)||(34759329-34759536)
chr6 (475-622)||(11547046-11547191)
chr6 (471-620)||(34761452-34761603)
chr6 (11-86)||(34758580-34758655)
[»] chr5 (1 HSPs)
chr5 (555-601)||(42332746-42332792)
[»] scaffold0060 (1 HSPs)
scaffold0060 (555-602)||(62050-62097)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 34616032 - 34616368
Alignment:
Q  11 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34616032 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca 34616131  T
Q  111 ttcgtgaaatacaaactaagattaattttgatgagtaaaactccttttattttaacaaaaacaactagtaaccaagtttttaaaaggtggccgaagttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  34616132 ttcgtgaaatacaaactaagattaattttgatgagtaaaactccttttattttaacaaaaacaactaataaccaaatttttaaaaggtggccgaagtttg 34616231  T
Q  211 attcagatatatgcctttatcaactgtgttaagtcccatgaggacgaatagttgttaaatttgtttgtatcgaattaatttataacatagactaacttaa 310  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34616232 aatcagatatatgcctttatcaactgtgttaagtctcatgaggatgaatagttgttaaatttgtttgtatcgaattaatttatagcatagactaacttaa 34616331  T
Q  311 aagatttaatatagtaatgtagtctagagatttgtac 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  34616332 aagatttaatatagtaatgtagtctagagatttgtac 34616368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 34743469 - 34743805
Alignment:
Q  11 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743469 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca 34743568  T
Q  111 ttcgtgaaatacaaactaagattaattttgatgagtaaaactccttttattttaacaaaaacaactagtaaccaagtttttaaaaggtggccgaagttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  34743569 ttcgtgaaatacaaactaagattaattttgatgagtaaaactccttttattttaacaaaaacaactaataaccaaatttttaaaaggtggccgaagtttg 34743668  T
Q  211 attcagatatatgcctttatcaactgtgttaagtcccatgaggacgaatagttgttaaatttgtttgtatcgaattaatttataacatagactaacttaa 310  Q
    | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34743669 aatcagatatatgcctttatcaactgtgttaagtctcatgaggatgaatagttgttaaatttgtttgtatcgaattaatttatagcatagactaacttaa 34743768  T
Q  311 aagatttaatatagtaatgtagtctagagatttgtac 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  34743769 aagatttaatatagtaatgtagtctagagatttgtac 34743805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 429 - 628
Target Start/End: Original strand, 34616452 - 34616650
Alignment:
Q  429 caacttattgtttatgcaatgctcgagagattagttgcgcgtagaggatatctgatttacactaaactgattgtttattcaataataagagttattttat 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34616452 caacttattgtttatgcaatgctcgagagattagttgcgcgtagaggatatctgatttacactaaactgattgtttattcaataataagagttattttat 34616551  T
Q  529 acctcaattaaataagnnnnnnnnngttaacaaatcaaaatgagattaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacaccatgttca 628  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34616552 acctcaattaaataag-ttttttttgttaacaaatcaaaatgagattaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacaccatgttca 34616650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 429 - 628
Target Start/End: Original strand, 34743889 - 34744087
Alignment:
Q  429 caacttattgtttatgcaatgctcgagagattagttgcgcgtagaggatatctgatttacactaaactgattgtttattcaataataagagttattttat 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743889 caacttattgtttatgcaatgctcgagagattagttgcgcgtagaggatatctgatttacactaaactgattgtttattcaataataagagttattttat 34743988  T
Q  529 acctcaattaaataagnnnnnnnnngttaacaaatcaaaatgagattaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacaccatgttca 628  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743989 acctcaattaaataag-ttttttttgttaacaaatcaaaatgagattaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacaccatgttca 34744087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 11 - 331
Target Start/End: Original strand, 11544864 - 11545153
Alignment:
Q  11 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                ||||    
T  11544864 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgcta----------------tcca 11544947  T
Q  111 ttcgtgaaatacaaactaagattaattttgatgagtaaaactccttttattttaacaaaaacaactagtaaccaagtttttaaaaggtggccgaagttta 210  Q
    ||||||||||||||||||||               |||||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||||||     
T  11544948 ttcgtgaaatacaaactaag---------------taaaactccttttattttaacaaaaacaatgaataaccaagtttttaaaaggtggccaaagtttg 11545032  T
Q  211 attcagatatatgcctttatcaactgtgttaagtcccatgaggacgaatagttgttaaatttgtttgtatcgaattaatttataacatagactaacttaa 310  Q
    | |  |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  11545033 aatgggatatatgcctttatcaactgtgttaagtctcatgaggacgaataattgttaagtttgtttgtatcgaattaatttatagcatagactaacttaa 11545132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 126 - 333
Target Start/End: Original strand, 34759329 - 34759536
Alignment:
Q  126 ctaagattaattttgatgagtaaaactccttttattttaacaaaaacaactagtaaccaagtttttaaaaggtggccgaagtttaattcagatatatgcc 225  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | || ||||||||||    
T  34759329 ctaagattaattttgatgaataaaactccttttattttaacaaaaacaacgaataaccaagtttttaaaaggtggccgaagtttgaatcggatatatgcc 34759428  T
Q  226 tttatcaactgtgttaagtcccatgaggacgaatagttgttaaatttgtttgtatcgaattaatttataacatagactaacttaaaagatttaatatagt 325  Q
    |||||||||| ||||||||| | ||||||||||||  |||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||    
T  34759429 tttatcaactctgttaagtctcctgaggacgaataactgttaagtttgtttgtatcgaattaatttatagcatagagtaacttaaaagatttaatattgt 34759528  T
Q  326 aatgtagt 333  Q
    ||||||||    
T  34759529 aatgtagt 34759536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 475 - 622
Target Start/End: Original strand, 11547046 - 11547191
Alignment:
Q  475 gatatctgatttacactaaactgattgtttattcaataataa-gagttattttatacctcaattaaataagnnnnnnnnngttaacaaatcaaaatgaga 573  Q
    |||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||          ||||||||||||||||||     
T  11547046 gatacctggtttacactaaaccgattgtttattcaataataaagagttattttatacctcaattaaataagttttttt---ttaacaaatcaaaatgagt 11547142  T
Q  574 ttaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacacca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11547143 ttaaaaacaaccttggatgtttccacccgtgcaaaaaggaggaacacca 11547191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 471 - 620
Target Start/End: Original strand, 34761452 - 34761603
Alignment:
Q  471 agaggatatctgatttacactaaactgattgtttattcaataat-aagagttattttatacctcaattaaataag-nnnnnnnnngttaacaaatcaaaa 568  Q
    |||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||    
T  34761452 agaggatacctggtttacactaaaccgattgtttattcaataataaagagttattttatacctcaattaaataagtttttttttttttaacaaatcaaaa 34761551  T
Q  569 tgagattaaaaacaaccttggatgtttccacccgtgcaaagaggaggaacac 620  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||||    
T  34761552 tgagattaaaaacaaccttcgatgtttccacctgtgcaaaaaggaggaacac 34761603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 34758580 - 34758655
Alignment:
Q  11 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaat 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34758580 tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaat 34758655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 42332746 - 42332792
Alignment:
Q  555 ttaacaaatcaaaatgagattaaaaacaaccttggatgtttccaccc 601  Q
    |||||||||||||||||||||||||||| || | |||||||||||||    
T  42332746 ttaacaaatcaaaatgagattaaaaacacccatcgatgtttccaccc 42332792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 602
Target Start/End: Original strand, 62050 - 62097
Alignment:
Q  555 ttaacaaatcaaaatgagattaaaaacaaccttggatgtttccacccg 602  Q
    ||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  62050 ttaacaaatcaaaatgatattataaacaaccttcgatgttttcacccg 62097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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