View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_high_2 (Length: 535)

Name: NF14630_high_2
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_high_2
NF14630_high_2
[»] chr3 (4 HSPs)
chr3 (17-371)||(33460876-33461226)
chr3 (378-530)||(33462192-33462345)
chr3 (52-231)||(7320876-7321055)
chr3 (73-167)||(43444750-43444845)
[»] chr8 (2 HSPs)
chr8 (39-348)||(23589064-23589365)
chr8 (29-400)||(12561333-12561696)
[»] chr1 (4 HSPs)
chr1 (52-258)||(2886766-2886968)
chr1 (75-158)||(16824856-16824939)
chr1 (73-128)||(15258241-15258296)
chr1 (279-375)||(16825041-16825137)
[»] chr4 (4 HSPs)
chr4 (30-167)||(10819696-10819833)
chr4 (180-258)||(41941869-41941943)
chr4 (280-329)||(19156957-19157006)
chr4 (70-158)||(19156760-19156848)
[»] chr2 (2 HSPs)
chr2 (29-228)||(4652905-4653104)
chr2 (64-158)||(6571820-6571914)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 33460876 - 33461226
Alignment:
Q  17 atcatgtaagtcgtgaaggatttcctctgtgggttaagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaatagga 116  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33460876 atcatgtaagtcgtgaaggattttctctttgggtgaagagcaacaggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaatagga 33460975  T
Q  117 agatcattgtgataacaaagccaaagaaagtgttggagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33460976 agatcattgtgataacaaagccaaagaaagtgttggagttttgttggtactcgaagatggcagagccaattcatgttacaattagcattccaatctttat 33461075  T
Q  217 tttgtttaagaagcccgtatatagtatccactcgagcaagtaagtatatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactcc 316  Q
    ||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33461076 tttgtttaaaaagcccgtatatagtatccactcgagc----aagtatatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactcc 33461171  T
Q  317 aagttattaggtgccggaagctcgtgaatataatcaataatgtcaagtggtatca 371  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  33461172 aagttattaggtgccggaagctggtgaatataaccaataatgtcaagtggtatca 33461226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 378 - 530
Target Start/End: Original strand, 33462192 - 33462345
Alignment:
Q  378 caaagccttacaagttccacctatcatcatagagcatgtccctcaaacatatatctgaatcactaatattaacaaagaaaatg--ataaatattacaaaa 475  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||  |||| ||||||||||    
T  33462192 caaagccttacaagttccacctaccatcatacaacatgtccctcaagcatatatctgaatcactaatgttaacaaagaaaatgatataagtattacaaaa 33462291  T
Q  476 acatggnnnnnnncgaaatacacgaaagtgtaattaagtgcatttgctacctatg 530  Q
    || |||       |||||||||||||||||||||| |||||||||||||||||||    
T  33462292 acttgg-aaaaaacgaaatacacgaaagtgtaattcagtgcatttgctacctatg 33462345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 231
Target Start/End: Complemental strand, 7321055 - 7320876
Alignment:
Q  52 aagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagccaaagaaagtgttg 151  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||| |||    |||||||||||||| |||| ||| ||||||| || |||||||||||    
T  7321055 aagagcaacaggtgcagcttggagaagctaccatgttgcaatgatgccgatgaacattaataggaagagcattatgaaaacaaagtcatagaaagtgttg 7320956  T
Q  152 gagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttattttgtttaagaagcc 231  Q
    |||||||| | |||||  |||    || || ||||||||||||||||   ||||||||||| ||||||||| ||||||||    
T  7320955 gagttttgctcgtactttaaggcatcaaagtcaattcatgttacaattcacattccaatctctattttgttgaagaagcc 7320876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 43444845 - 43444750
Alignment:
Q  73 gagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagcca-aagaaagtgttggagttttgttggtact 167  Q
    |||||| |||||||||||||||||| ||||   |||||||||| |||  ||| ||| |||||||||| || ||| |||| |||||||| |||||||    
T  43444845 gagaagctaccatgttgcaatgatgccgaccaacattaatagggagagaattatgaaaacaaagccataaaaaaatgtttgagttttggtggtact 43444750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 39 - 348
Target Start/End: Complemental strand, 23589365 - 23589064
Alignment:
Q  39 tcctctgtgggttaagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagcc 138  Q
    |||||| ||||| ||||||||  ||||| | ||||||||| |||||||||||||||||| ||||   |||||||||| ||| |||||||| |||||||||    
T  23589365 tcctctatgggtgaagagcaacgggtgcggcttggagaagctaccatgttgcaatgatgccgacgaacattaatagggagagcattgtgaaaacaaagcc 23589266  T
Q  139 aaagaaagtgttggagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttattttgtttaagaagcccgtatat 238  Q
    | ||||||||||| ||||||| |||||||  |||  | || ||||||||||||||| |||   ||||||||||| ||||||||| || |||||     ||    
T  23589265 atagaaagtgttgaagttttgctggtactttaaggcgccaaagccaattcatgttaaaattcacattccaatctatattttgttgaataagcc----aat 23589170  T
Q  239 agtatccactcgagcaagtaagtatatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccggaagct 338  Q
    ||||||||||    |||| |||||||| ||   ||||  |||| |||||||||||||||||| || || ||||  |||||||||||||| || |||||||    
T  23589169 agtatccact----caagcaagtatattcaactttctttacattcttccaagtccatgcatcttggagtcgtacatccaagttattaggagctggaagct 23589074  T
Q  339 cgtgaatata 348  Q
      ||||||||    
T  23589073 gatgaatata 23589064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 29 - 400
Target Start/End: Complemental strand, 12561696 - 12561333
Alignment:
Q  29 gtgaaggatttcctctgtgggttaagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtga 128  Q
    |||||| || |||||  ||||| ||||||||| ||||||| ||||||||| |||||| || |||||||| |||||  ||||||||   ||| |||| |||    
T  12561696 gtgaagaatatcctccatgggtgaagagcaatgggtgcagcttggagaagctaccattttacaatgatgccgacaaacattaatatagagagcattatga 12561597  T
Q  129 taacaaagccaaagaaagtgttggagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttattttgtttaagaa 228  Q
     |||||||||| ||||||||||||| ||||| |||||||  |||  | || |||||||||||||||||||   ||||||||||| ||||||||| |||||    
T  12561596 aaacaaagccatagaaagtgttggatttttgctggtactttaaggcgtcaaagccaattcatgttacaattcacattccaatctctattttgttgaagaa 12561497  T
Q  229 gcccgtatatagtatccactcgagcaagtaagtatatgcactcttctcgacatgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggt 328  Q
    |||     ||| |||| ||||||||    |||||||| |||  ||||   ||||| ||||||||||| |||| ||| | ||||  ||||||||||||||     
T  12561496 gcc----aataatatctactcgagc----aagtatattcacctttctttgcatgcctccaagtccatacatcttgatgtcgtacttccaagttattagga 12561405  T
Q  329 gccggaagctcgtgaatataatcaataatgtcaagtggtatcatggttgcaaagccttacaagttccaccta 400  Q
    || |||||||  |||||||||  || ||| ||   ||||||||| |  ||||| |||| |||||||||||||    
T  12561404 gctggaagctgatgaatataacgaacaatatcggttggtatcatagcggcaaatccttgcaagttccaccta 12561333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 52 - 258
Target Start/End: Complemental strand, 2886968 - 2886766
Alignment:
Q  52 aagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagccaaagaaagtgttg 151  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| || | |||||||||    
T  2886968 aagagcaacgggtgcagcttggagaagctaccatgttgcaatgatgtcgacatgcattaatagggagaacattatgaaaacaaagtcatataaagtgttg 2886869  T
Q  152 gagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttattttgtttaagaagcccgtatatagtatccactcga 251  Q
    |||||| ||||||| |  ||| || || || || |||||||||||||   |||| |||||| ||||||||| | ||||||     |||||||||||||||    
T  2886868 gagtttggttggtattttaaggtgccaaagtcagttcatgttacaattcacatttcaatctctattttgttgatgaagcc----aatagtatccactcga 2886773  T
Q  252 gcaagta 258  Q
    |||||||    
T  2886772 gcaagta 2886766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 16824856 - 16824939
Alignment:
Q  75 gaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagccaaagaaagtgttggagtttt 158  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||| |||| ||| |||||| ||| ||||||||||||| ||||    
T  16824856 gaagctaccatgttgcaatgatgccgacatgcattaatagggagagcattatgaaaacaaacccatagaaagtgttggattttt 16824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 15258296 - 15258241
Alignment:
Q  73 gagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtga 128  Q
    |||||| || ||||||||||||||||||||||||||| |||| || ||||||||||    
T  15258296 gagaagctatcatgttgcaatgatgtcgacatgcattgatagaaaaatcattgtga 15258241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 16825041 - 16825137
Alignment:
Q  279 catgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtgccggaagctcgtgaatataatcaataatgtcaagtggtatcatggt 375  Q
    ||||| |||||||||| ||||| ||||  ||||  ||||| |||||||| || |||||||  |||||||||| || ||||||   ||||||||||||    
T  16825041 catgcctccaagtccacgcatcttgaaatcgtacatccaaattattaggagctggaagctgatgaatataatgaacaatgtcggttggtatcatggt 16825137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 10819833 - 10819696
Alignment:
Q  30 tgaaggatttcctctgtgggttaagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgat 129  Q
    ||||| || |||||| ||||| |||||||||  |||||  ||||||||| |||||||||||||||||| ||||  ||||||||||| ||| ||||||||     
T  10819833 tgaagaatatcctctatgggtgaagagcaatgtgtgcaacttggagaagctaccatgttgcaatgatgccgacgggcattaatagggagagcattgtgaa 10819734  T
Q  130 aacaaagccaaagaaagtgttggagttttgttggtact 167  Q
    |||||||| | ||||||||||| ||||||| |||||||    
T  10819733 aacaaagctatagaaagtgttgaagttttgctggtact 10819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 41941943 - 41941869
Alignment:
Q  180 agccaattcatgttacaatcagcattccaatctttattttgtttaagaagcccgtatatagtatccactcgagcaagta 258  Q
    |||||||| |||||||||| | ||||||||||| ||||||||| ||||||||     ||||||||||||||||||||||    
T  41941943 agccaattaatgttacaattaacattccaatctctattttgttgaagaagcc----aatagtatccactcgagcaagta 41941869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 19156957 - 19157006
Alignment:
Q  280 atgcttccaagtccatgcatcgtgaagccgtaactccaagttattaggtg 329  Q
    ||||||||||||||||||||| ||||| ||||| | ||||||||||||||    
T  19156957 atgcttccaagtccatgcatcttgaaggcgtaaattcaagttattaggtg 19157006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 19156760 - 19156848
Alignment:
Q  70 ttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagccaaagaaagtgttggagtttt 158  Q
    ||||||||| || ||||||  |||||||||||    |||||||| ||||| |||| ||| || |||| ||||||||||||| |||||||    
T  19156760 ttggagaagctatcatgttaaaatgatgtcgaaggccattaataagaagagcattttgaaaagaaagtcaaagaaagtgttagagtttt 19156848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 4653104 - 4652905
Alignment:
Q  29 gtgaaggatttcctctgtgggttaagagcaataggtgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtga 128  Q
    |||||| || |||||| ||| | |||||||| |||||||| ||||||||| ||||||||||||||||||  |||   |||||||||| ||| |||| |||    
T  4653104 gtgaagaatatcctctatggctgaagagcaacaggtgcagcttggagaagctaccatgttgcaatgatgctgacggacattaatagggagagcattatga 4653005  T
Q  129 taacaaagccaaagaaagtgttggagttttgttggtactcgaagatggcagagccaattcatgttacaatcagcattccaatctttattttgtttaagaa 228  Q
     ||||||| || ||||||||||| ||||||  |||||||  |||  | || ||||||||||| |||||||   ||||||||||| ||| ||||| |||||    
T  4653004 aaacaaagtcatagaaagtgttgaagttttactggtactttaaggcgccaaagccaattcatattacaattcacattccaatctctatgttgttcaagaa 4652905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 6571820 - 6571914
Alignment:
Q  64 tgcagtttggagaagttaccatgttgcaatgatgtcgacatgcattaataggaagatcattgtgataacaaagccaaagaaagtgttggagtttt 158  Q
    ||||||||||||||| |||||| ||||||||||| ||||  ||||||||||| ||| |||| ||| ||||||  || ||||||||||||| ||||    
T  6571820 tgcagtttggagaagctaccatattgcaatgatgccgacgggcattaatagggagagcattatgaaaacaaaatcatagaaagtgttggattttt 6571914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University