View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_high_5 (Length: 398)

Name: NF14630_high_5
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_high_5
NF14630_high_5
[»] chr4 (24 HSPs)
chr4 (87-198)||(43079161-43079272)
chr4 (87-192)||(43079921-43080026)
chr4 (87-132)||(199266-199311)
chr4 (87-132)||(388754-388799)
chr4 (87-128)||(33569721-33569762)
chr4 (87-128)||(2713887-2713928)
chr4 (87-132)||(12639966-12640011)
chr4 (87-128)||(18501740-18501781)
chr4 (87-132)||(25370432-25370477)
chr4 (91-128)||(33758131-33758168)
chr4 (87-132)||(35428240-35428285)
chr4 (87-132)||(39844897-39844942)
chr4 (87-132)||(55815826-55815871)
chr4 (94-142)||(199007-199055)
chr4 (94-132)||(20075533-20075571)
chr4 (94-132)||(20422139-20422177)
chr4 (94-132)||(36111256-36111294)
chr4 (94-132)||(52869455-52869493)
chr4 (94-132)||(55816490-55816528)
chr4 (87-128)||(31876789-31876830)
chr4 (87-132)||(40847678-40847723)
chr4 (87-132)||(48091135-48091180)
chr4 (87-132)||(52870156-52870201)
chr4 (16-44)||(9073444-9073472)
[»] chr3 (17 HSPs)
chr3 (87-128)||(38280302-38280343)
chr3 (87-132)||(3944896-3944941)
chr3 (94-140)||(38279417-38279463)
chr3 (87-125)||(42356234-42356272)
chr3 (87-128)||(23584927-23584968)
chr3 (87-128)||(23599750-23599791)
chr3 (87-132)||(25025175-25025220)
chr3 (94-135)||(44868655-44868696)
chr3 (94-135)||(55281843-55281884)
chr3 (94-132)||(25025804-25025842)
chr3 (87-132)||(32672167-32672212)
chr3 (87-132)||(37373966-37374011)
chr3 (87-124)||(49752973-49753010)
chr3 (91-132)||(50687748-50687789)
chr3 (91-128)||(53269392-53269429)
chr3 (87-127)||(41040572-41040612)
chr3 (87-135)||(48219272-48219320)
[»] chr2 (24 HSPs)
chr2 (87-132)||(33847874-33847919)
chr2 (87-163)||(9958712-9958788)
chr2 (87-132)||(4387000-4387045)
chr2 (87-132)||(9224267-9224312)
chr2 (94-132)||(3230134-3230172)
chr2 (87-132)||(7716672-7716717)
chr2 (91-132)||(16571123-16571164)
chr2 (87-128)||(20244215-20244256)
chr2 (87-132)||(28223789-28223834)
chr2 (91-132)||(43743842-43743883)
chr2 (89-132)||(8113340-8113383)
chr2 (94-132)||(6849296-6849334)
chr2 (94-132)||(10883295-10883333)
chr2 (94-132)||(28224428-28224466)
chr2 (87-132)||(6849582-6849627)
chr2 (87-132)||(7583833-7583878)
chr2 (91-132)||(12206793-12206834)
chr2 (94-135)||(16571763-16571804)
chr2 (87-132)||(18950535-18950580)
chr2 (87-132)||(32471940-32471985)
chr2 (91-132)||(33848501-33848542)
chr2 (91-132)||(40165878-40165919)
chr2 (94-130)||(16887591-16887627)
chr2 (95-135)||(40166880-40166920)
[»] chr1 (12 HSPs)
chr1 (87-132)||(7782731-7782776)
chr1 (342-380)||(31147342-31147380)
chr1 (87-128)||(48619475-48619516)
chr1 (87-132)||(1403041-1403086)
chr1 (87-128)||(49534440-49534481)
chr1 (87-131)||(8560157-8560201)
chr1 (94-132)||(42839709-42839747)
chr1 (87-128)||(6288248-6288289)
chr1 (115-192)||(13361632-13361709)
chr1 (87-132)||(29148941-29148986)
chr1 (91-132)||(42838942-42838983)
chr1 (88-128)||(27817048-27817088)
[»] chr8 (14 HSPs)
chr8 (87-132)||(7818475-7818520)
chr8 (87-132)||(33114228-33114273)
chr8 (87-140)||(41761800-41761853)
chr8 (87-132)||(11999120-11999165)
chr8 (87-132)||(16889196-16889241)
chr8 (91-132)||(35237264-35237305)
chr8 (87-140)||(37532577-37532630)
chr8 (87-132)||(39852155-39852200)
chr8 (94-140)||(37533309-37533355)
chr8 (94-132)||(43591015-43591053)
chr8 (87-140)||(41762510-41762563)
chr8 (87-132)||(43433812-43433857)
chr8 (88-132)||(4374447-4374491)
chr8 (97-137)||(38572233-38572273)
[»] chr5 (9 HSPs)
chr5 (87-132)||(3957501-3957546)
chr5 (87-132)||(39149471-39149516)
chr5 (87-132)||(4929546-4929591)
chr5 (95-137)||(25075032-25075074)
chr5 (95-137)||(25133001-25133043)
chr5 (87-125)||(26688096-26688134)
chr5 (87-125)||(26957827-26957865)
chr5 (116-188)||(26712334-26712406)
chr5 (116-188)||(26982072-26982144)
[»] chr7 (14 HSPs)
chr7 (87-135)||(42455922-42455970)
chr7 (89-132)||(33806607-33806650)
chr7 (87-128)||(85093-85134)
chr7 (87-132)||(36682836-36682881)
chr7 (91-131)||(23283883-23283923)
chr7 (94-132)||(19816272-19816310)
chr7 (94-132)||(24044083-24044121)
chr7 (94-132)||(34853399-34853437)
chr7 (94-132)||(36683504-36683542)
chr7 (94-132)||(42456556-42456594)
chr7 (87-132)||(27855567-27855612)
chr7 (91-132)||(34854036-34854077)
chr7 (97-129)||(12923952-12923984)
chr7 (92-132)||(22276116-22276156)
[»] scaffold0229 (1 HSPs)
scaffold0229 (87-132)||(15273-15318)
[»] chr6 (6 HSPs)
chr6 (91-132)||(13936680-13936721)
chr6 (87-132)||(33668222-33668267)
chr6 (87-132)||(5523886-5523931)
chr6 (87-132)||(30611385-30611430)
chr6 (90-135)||(33648200-33648245)
chr6 (87-127)||(32079020-32079060)
[»] scaffold0368 (1 HSPs)
scaffold0368 (91-132)||(11824-11865)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 43079161 - 43079272
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaatacagtataatcatgcactctca 186  Q
    |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||| |||||| | ||||||||||||| | ||| | ||||||||||||||    
T  43079161 gtggcatttcacatgggaaaggacaatctttttccacaatgggaaagttaattttatccattagatcaagtaaagaacatagtcttatcatgcactctca 43079260  T
Q  187 acactaaatttt 198  Q
    |||||| |||||    
T  43079261 acactatatttt 43079272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 43080026 - 43079921
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaatacagtataatcatgcactctca 186  Q
    |||||||||||||||||||||| ||||||||| | ||||||| ||| |||||||||||||||| |||||||||| || ||| | ||||||  ||||||||    
T  43080026 gtggcatttcacatgggaaaggacaatccttttctaccatggaaaagttaatttcatccatcagatcaagtaaataacacaatctaatcagacactctca 43079927  T
Q  187 acacta 192  Q
    ||||||    
T  43079926 acacta 43079921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 199311 - 199266
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  199311 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 199266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 388754 - 388799
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  388754 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 388799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 33569721 - 33569762
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  33569721 gtggcatttcacatgggaaaggtcaatcctttcccaccatgg 33569762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 2713928 - 2713887
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  2713928 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 2713887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 12639966 - 12640011
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||    
T  12639966 gtggcatttcacatgggaaaggttaatccttttccaccatgggaaa 12640011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 18501740 - 18501781
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  18501740 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 18501781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 25370477 - 25370432
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||    
T  25370477 gtggcattttacatgggaaaggttaatcctttcccaccatgggaaa 25370432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 33758168 - 33758131
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33758168 catttcacatgggaaaggtcaatcctttcccaccatgg 33758131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 35428285 - 35428240
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||    
T  35428285 gtggcatttcagatgggaaaggttaatcctttcccaccatgggaaa 35428240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 39844897 - 39844942
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||    
T  39844897 gtggcatttcacatgggaaaggggaatcctttcccaccataggaaa 39844942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 55815826 - 55815871
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  55815826 gtggcatttcacatgggaaaggttaatcctttcccactatgggaaa 55815871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 199007 - 199055
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaattaatttca 142  Q
    |||||||||||||||  |||||||||||||||||||||| |||| ||||    
T  199007 ttcacatgggaaaggttaatcctttcccaccatgggaaagttaaattca 199055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 20075533 - 20075571
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  20075533 ttcacatgggaaaggttaatcctttcccaccatgggaaa 20075571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 20422139 - 20422177
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  20422139 ttcacatgggaaaggttaatcctttcccaccatgggaaa 20422177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36111294 - 36111256
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  36111294 ttcacatgggaaaggttaatcctttcccaccatgggaaa 36111256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 52869455 - 52869493
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  52869455 ttcacatgggaaaggtgaatcctttcccaccatgggaaa 52869493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 55816528 - 55816490
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  55816528 ttcacatgggaaaggttaatcctttcccaccatgggaaa 55816490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 31876789 - 31876830
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  |||||||| |||||||||    
T  31876789 gtggcatttcacatgggaaaggttaatccttttccaccatgg 31876830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 40847678 - 40847723
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||| |||||  ||||||||||||||||| ||||    
T  40847678 gtggcatttcacatggaaaaggttaatcctttcccaccatgagaaa 40847723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 48091180 - 48091135
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||| ||||||||||  |||| |||||||||||||||||    
T  48091180 gtggcatttcatatgggaaaggttaatcttttcccaccatgggaaa 48091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 52870201 - 52870156
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||| ||| |||||||||    
T  52870201 gtggcatttcacatgggaaaggtgaatccttttccatcatgggaaa 52870156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 9073472 - 9073444
Alignment:
Q  16 atagggtggaaaaaataatagtctaaatt 44  Q
    |||||||||||||||||||||||||||||    
T  9073472 atagggtggaaaaaataatagtctaaatt 9073444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 38280343 - 38280302
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38280343 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 38280302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 3944896 - 3944941
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  3944896 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 3944941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 38279417 - 38279463
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaattaattt 140  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||    
T  38279417 ttcacatgggaaaggtgaatcctttcccaccatgggaaagttaattt 38279463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 42356234 - 42356272
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccacca 125  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42356234 gtggcatttcacatgggaaaggtcaatcctttcccacca 42356272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 23584968 - 23584927
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  23584968 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 23584927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 23599791 - 23599750
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  23599791 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 23599750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 25025175 - 25025220
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||    
T  25025175 gtggcatttcacatgggaaaggttaatcctttcccatcatgggaaa 25025220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 44868696 - 44868655
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  44868696 ttcacatgggaaaggttaatcctttcccaccatgggaaaatt 44868655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 55281843 - 55281884
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  55281843 ttcacatgggaaaggttaatcctttcccaccatgggaaaatt 55281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 25025842 - 25025804
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  25025842 ttcacatgggaaaggttaatcctttcccaccatgggaaa 25025804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 32672167 - 32672212
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||    
T  32672167 gtggcattttacatgggaaaggttaatcctttcccaacatgggaaa 32672212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 37373966 - 37374011
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||||||||||||  |||| |||||||||||||||||    
T  37373966 gtggcattttacatgggaaaggttaatcttttcccaccatgggaaa 37374011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 49753010 - 49752973
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccacc 124  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  49753010 gtggcatttcacatgggaaaggttaatcctttcccacc 49752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 50687789 - 50687748
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||| ||||||||||||||||||    
T  50687789 catttcacatgggaaaggttaattctttcccaccatgggaaa 50687748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 53269429 - 53269392
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  53269429 catttcacatgggaaaggttaatcctttcccaccatgg 53269392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 41040572 - 41040612
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatg 127  Q
    ||||||||||||||||||||||  ||||||||| |||||||    
T  41040572 gtggcatttcacatgggaaaggtgaatcctttctcaccatg 41040612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 48219320 - 48219272
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    ||||||||| ||||||||||||  ||| ||||| |||||||||||||||    
T  48219320 gtggcattttacatgggaaaggttaattctttctcaccatgggaaaatt 48219272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 33847874 - 33847919
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  33847874 gtggcatttcacatgggaaaggccaatccttttccaccatgggaaa 33847919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 9958788 - 9958712
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaa 163  Q
    ||||||||| |||||||||||  |||||||||||||||||  |||| |||||||||||||||| ||  |||||||||    
T  9958788 gtggcatttaacatgggaaagatcaatcctttcccaccataagaaagttaatttcatccatcagatttagtaaagaa 9958712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 4387045 - 4387000
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  4387045 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 4387000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 9224267 - 9224312
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  9224267 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 9224312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 3230172 - 3230134
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  3230172 ttcacatgggaaaggccaatccttttccaccatgggaaa 3230134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 7716672 - 7716717
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||    
T  7716672 gtggcatttcacatgggaaatgttaatcctttcccaccatgggaaa 7716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 16571123 - 16571164
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  16571123 catttcacatgggaaaggttaatcctttcccaccatgggaaa 16571164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 20244256 - 20244215
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  20244256 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 20244215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 28223789 - 28223834
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||    
T  28223789 gtggcatttcacatgggaaaggttaatcctttcccaccataggaaa 28223834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 43743883 - 43743842
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  43743883 catttcacatgggaaaggtgaatcctttcccaccatgggaaa 43743842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 8113383 - 8113340
Alignment:
Q  89 ggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||  |||||||| |||||||||||||    
T  8113383 ggcatttcacatgggaaaggttaatccttttccaccatgggaaa 8113340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 6849296 - 6849334
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  6849296 ttcacatgggaaaggttaatcctttcccaccatgggaaa 6849334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 10883295 - 10883333
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  10883295 ttcacatgggaaaggttaatcctttcccaccatgggaaa 10883333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 28224466 - 28224428
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  28224466 ttcacatgggaaaggttaatcctttcccaccatgggaaa 28224428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 6849627 - 6849582
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| |||||| |||||  ||||||||||||||||||||||    
T  6849627 gtggcattttacatggaaaaggttaatcctttcccaccatgggaaa 6849582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 7583878 - 7583833
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||| ||||||||    
T  7583878 gtggcatttcacatgggaaaggttaatcttttcccactatgggaaa 7583833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 12206793 - 12206834
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  12206793 catttcacatgggaaaggttaatcctttcccaccatgagaaa 12206834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 16571804 - 16571763
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    |||||||||||||||  |||||||||||| ||||||||||||    
T  16571804 ttcacatgggaaaggttaatcctttcccatcatgggaaaatt 16571763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 18950580 - 18950535
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||| |||| |||||  ||||||||||||||||||||||    
T  18950580 gtggcatttcatatggaaaaggttaatcctttcccaccatgggaaa 18950535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 32471940 - 32471985
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||    
T  32471940 gtggcatttaacatgggaaaggtggatcctttcccaccatgggaaa 32471985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 33848542 - 33848501
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||||| ||||| ||||||| |||||||||    
T  33848542 catttcacatgggaaaggtcaatcttttcccatcatgggaaa 33848501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 40165878 - 40165919
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  40165878 catttcacatgggaaagaccaatcattttccaccatgggaaa 40165919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 16887591 - 16887627
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatggga 130  Q
    |||||||||||||||  ||||||||||||||||||||    
T  16887591 ttcacatgggaaaggttaatcctttcccaccatggga 16887627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 40166920 - 40166880
Alignment:
Q  95 tcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    |||||| |||||||  |||||||||||||||||||||||||    
T  40166920 tcacataggaaaggttaatcctttcccaccatgggaaaatt 40166880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 7782776 - 7782731
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  7782776 gtggcatttcacatgggaaaggccaatcctttcctaccatgggaaa 7782731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 31147380 - 31147342
Alignment:
Q  342 tgcagactttggtggcaagaagctttcactgtacctggt 380  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31147380 tgcagactttggtggcaagaagctttcactgtacctggt 31147342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 48619475 - 48619516
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  48619475 gtggcatttcacatgggaaaggccaattctttcccaccatgg 48619516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 1403041 - 1403086
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||    
T  1403041 gtggcatttcacatggaaaaggttaatcctttcccaccatgggaaa 1403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 49534481 - 49534440
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  49534481 gtggcatttcacatgggaaaggttaatcctttcccaccatgg 49534440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 8560157 - 8560201
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaa 131  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||    
T  8560157 gtggcatttcacatgggaaaggttaatccttttccaccatgggaa 8560201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 42839709 - 42839747
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  42839709 ttcacatgggaaaggttaatcctttcccaccatgggaaa 42839747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 6288289 - 6288248
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||| ||||||||    
T  6288289 gtggcatttcacatgggaaaggttaatcctttctcaccatgg 6288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 13361632 - 13361709
Alignment:
Q  115 ctttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaatacagtataatcatgcactctcaacacta 192  Q
    |||||||||||||||||| ||||||| | ||| || ||||||||||||| |||   | ||||||  ||||||||||||    
T  13361632 ctttcccaccatgggaaagttaatttgaaccaccagatcaagtaaagaacacacatttatcatggtctctcaacacta 13361709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 29148941 - 29148986
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||| ||||||||  ||||||||||||||||||||||    
T  29148941 gtggcatttaacacgggaaaggttaatcctttcccaccatgggaaa 29148986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 42838942 - 42838983
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  42838942 catttcacatggtaaaggttaatcctttcccaccatgggaaa 42838983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 27817088 - 27817048
Alignment:
Q  88 tggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  27817088 tggcatttcacatgggtaaggttaatcctttcccaccatgg 27817048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 7818475 - 7818520
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7818475 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 7818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 33114273 - 33114228
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  33114273 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 33114228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 41761800 - 41761853
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaattt 140  Q
    ||||||||||||||||||||||  |||||||||||||||||||| | |||||||    
T  41761800 gtggcatttcacatgggaaaggttaatcctttcccaccatgggacagttaattt 41761853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 11999165 - 11999120
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  11999165 gtggcatttcacatgggaaaggttaatcatttcccaccatgggaaa 11999120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 16889196 - 16889241
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  16889196 gtggcatttcacatgggaaaggttaatcttttcccaccatgggaaa 16889241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 35237264 - 35237305
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  35237264 catttcacatgggaaaggttaatcctttcccaccatgggaaa 35237305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 37532577 - 37532630
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaattt 140  Q
    ||||||||||||||||||||||  |||||||||||||||||  | |||||||||    
T  37532577 gtggcatttcacatgggaaaggttaatcctttcccaccatgaaacaattaattt 37532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 39852155 - 39852200
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||    
T  39852155 gtggcatttcaaatgggaaaggttaatcctttcccaccatgggaaa 39852200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 37533355 - 37533309
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaaattaattt 140  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||    
T  37533355 ttcacatgggaaaggttaatcctttcccaccataggacaattaattt 37533309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 43591015 - 43591053
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  43591015 ttcacatgggaaaggttaatcctttcccaccatgggaaa 43591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 41762563 - 41762510
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaattaattt 140  Q
    |||||||||||||||||||||   |||| ||||||||||||||| | |||||||    
T  41762563 gtggcatttcacatgggaaagtttaatcttttcccaccatgggacagttaattt 41762510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 43433812 - 43433857
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||| ||||||||||||  |||| |||||||||||||||||    
T  43433812 gtggcatttaacatgggaaaggggaatcatttcccaccatgggaaa 43433857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 4374447 - 4374491
Alignment:
Q  88 tggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||||    
T  4374447 tggcatttcacatgagaaaggtcaatcttttcccaccataggaaa 4374491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 38572233 - 38572273
Alignment:
Q  97 acatgggaaaggccaatcctttcccaccatgggaaaattaa 137  Q
    |||||||||||| ||||| ||||||||||||||||| ||||    
T  38572233 acatgggaaaggtcaatcttttcccaccatgggaaagttaa 38572273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 3957501 - 3957546
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  3957501 gtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 3957546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 39149516 - 39149471
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  39149516 gtggcatttcacatgggaaaggtgaatcctttcccaccatgggaaa 39149471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 4929591 - 4929546
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||    
T  4929591 gtggcatttcacatgggaaaggttaatccttttccaccatgggaaa 4929546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 25075074 - 25075032
Alignment:
Q  95 tcacatgggaaaggccaatcctttcccaccatgggaaaattaa 137  Q
    ||||||||||||||  |||||||||||||||||||||| ||||    
T  25075074 tcacatgggaaaggttaatcctttcccaccatgggaaagttaa 25075032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 25133043 - 25133001
Alignment:
Q  95 tcacatgggaaaggccaatcctttcccaccatgggaaaattaa 137  Q
    ||||||||||||||  |||||||||||||||||||||| ||||    
T  25133043 tcacatgggaaaggttaatcctttcccaccatgggaaagttaa 25133001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 26688134 - 26688096
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccacca 125  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  26688134 gtggcatttcacatgggaaaggttaatcctttcccacca 26688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 26957865 - 26957827
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccacca 125  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  26957865 gtggcatttcacatgggaaaggttaatcctttcccacca 26957827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 26712406 - 26712334
Alignment:
Q  116 tttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaatacagtataatcatgcactctcaac 188  Q
    |||||||||||||||||  |||||| | |||||| ||||||||||||| ||  | | |||||||||| |||||    
T  26712406 tttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaacaccatcttatcatgcactgtcaac 26712334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 26982144 - 26982072
Alignment:
Q  116 tttcccaccatgggaaaattaatttcatccatcaaatcaagtaaagaatacagtataatcatgcactctcaac 188  Q
    |||||||||||||||||  |||||| | |||||| ||||||||||||| ||  | | |||||||||| |||||    
T  26982144 tttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaacaccatcttatcatgcactgtcaac 26982072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 42455922 - 42455970
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  42455922 gtggcatttcacatgggaaaggttaatcctttcccaccacgggaaaatt 42455970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 33806650 - 33806607
Alignment:
Q  89 ggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  33806650 ggcatttcacatgggaaaggtcaatcctttcccaccattggaaa 33806607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 85134 - 85093
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgg 128  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  85134 gtggcatttcacatgggaaaggtgaatcctttcccaccatgg 85093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 36682836 - 36682881
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  36682836 gtggcatttcacatgggaaaggttaatcatttcccaccatgggaaa 36682881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 23283923 - 23283883
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaa 131  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  23283923 catttcacatgggaaaggggaatcctttcccaccatgggaa 23283883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 19816272 - 19816310
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  19816272 ttcacatgggaaaggttaatcctttcccaccatgggaaa 19816310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 24044121 - 24044083
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  24044121 ttcacatgggaaaggttaatcctttcccaccatgggaaa 24044083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 34853399 - 34853437
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  34853399 ttcacatgggaaaggttaatcctttcccaccatgggaaa 34853437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36683542 - 36683504
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  36683542 ttcacatgggaaaggttaatcctttcccaccatgggaaa 36683504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 42456594 - 42456556
Alignment:
Q  94 ttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  42456594 ttcacatgggaaaggttaatcctttcccaccatgggaaa 42456556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 27855567 - 27855612
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||||||| ||||    
T  27855567 gtggcatttcacatgggaaaggttaatcatttcccaccatgagaaa 27855612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 34854077 - 34854036
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  |||||||||||||||| |||||    
T  34854077 catttcacatgggaaaggttaatcctttcccaccataggaaa 34854036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 12923952 - 12923984
Alignment:
Q  97 acatgggaaaggccaatcctttcccaccatggg 129  Q
    |||||||||||| ||||||||||||||||||||    
T  12923952 acatgggaaagggcaatcctttcccaccatggg 12923984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 22276156 - 22276116
Alignment:
Q  92 atttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  22276156 attttacatgggaaaggttaatcctttcccaccatgggaaa 22276116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 15318 - 15273
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||    
T  15318 gtggcatttcacatggaaaaggttaatcctttcccaccatgggaaa 15273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 13936721 - 13936680
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  13936721 catttcacatgggaaaggttaatcctttcccaccatgggaaa 13936680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 33668222 - 33668267
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  33668222 gtggcatttcacatgggaaaggttaatcatttcccaccatgggaaa 33668267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 5523931 - 5523886
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||||||||||  |||| ||||||||||| |||||    
T  5523931 gtggcatttcacatgggaaaggttaatcttttcccaccattggaaa 5523886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30611430 - 30611385
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    ||||||||||||||| |||| |  ||||||||||||||||||||||    
T  30611430 gtggcatttcacatgagaaatgttaatcctttcccaccatgggaaa 30611385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 33648245 - 33648200
Alignment:
Q  90 gcatttcacatgggaaaggccaatcctttcccaccatgggaaaatt 135  Q
    ||||||||||||||||||| |||| ||||| |||||| ||||||||    
T  33648245 gcatttcacatgggaaaggtcaattctttcacaccataggaaaatt 33648200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 32079020 - 32079060
Alignment:
Q  87 gtggcatttcacatgggaaaggccaatcctttcccaccatg 127  Q
    ||||||||||||||||||||||  |||||||| ||||||||    
T  32079020 gtggcatttcacatgggaaaggtgaatccttttccaccatg 32079060  T

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Target: scaffold0368 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 11865 - 11824
Alignment:
Q  91 catttcacatgggaaaggccaatcctttcccaccatgggaaa 132  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  11865 catttcacatggtaaaggttaatcctttcccaccatgggaaa 11824  T

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