View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14630_low_11 (Length: 307)
Name: NF14630_low_11
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14630_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 43843481 - 43843781
Alignment:
| Q |
1 |
tacaccatttaaaattttattttgctgctatcagtaagtgttccaaaattgataacgatgtttactttccctgaaaatctttaagcaatgatgaaataat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43843481 |
tacaccatttaaaaaattattttgctgctatcagtaagtgttccaaaattgataacgatgtttacttcccctgaaaatctttaagcaatgatgaaataat |
43843580 |
T |
|
| Q |
101 |
aaagttcccatgtttttacaatacctactctaggccctagatttttcacataaaactaaaaatgtcacaccctaacactccattaacttttgtacctcaa |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43843581 |
aaagttcccgagtttttacaatacctactctaggccctagatttttcacataaaactaaaaatgtcacaccctaacactccattaacttttgtacctcaa |
43843680 |
T |
|
| Q |
201 |
acagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccgttaccttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43843681 |
acagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccgttaccttt |
43843780 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
43843781 |
g |
43843781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 18219791 - 18219683
Alignment:
| Q |
193 |
tacctcaaacagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccg |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
18219791 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccg |
18219692 |
T |
|
| Q |
293 |
ttacctttg |
301 |
Q |
| |
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||||||||| |
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|
| T |
18219691 |
ttacctttg |
18219683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 18145870 - 18145978
Alignment:
| Q |
193 |
tacctcaaacagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccg |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||| |
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| T |
18145870 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagtttgccg |
18145969 |
T |
|
| Q |
293 |
ttacctttg |
301 |
Q |
| |
|
||||||||| |
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|
| T |
18145970 |
ttacctttg |
18145978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 19862900 - 19862789
Alignment:
| Q |
190 |
ttgtacctcaaacagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagtttt |
289 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19862900 |
ttgtacctcaaccagcgttgtcaagagttcatccatcgcagatctttgatccttttcgtagctttcaacccaaagtttgacagcatgaggaataagtttg |
19862801 |
T |
|
| Q |
290 |
ccgttacctttg |
301 |
Q |
| |
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|| ||| ||||| |
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|
| T |
19862800 |
ccattatctttg |
19862789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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