View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14630_low_13 (Length: 253)
Name: NF14630_low_13
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14630_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 1357226 - 1357003
Alignment:
| Q |
15 |
cataggctagtttaaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataaggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357226 |
cataggctagtttaaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataaggg |
1357127 |
T |
|
| Q |
115 |
aagtttgatgagattaacaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattt |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357126 |
aagtttgatgagattaaaaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattt |
1357027 |
T |
|
| Q |
215 |
tgtgaaagaatcttggaaacctca |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1357026 |
tgtgaaagaatcttggaaacctca |
1357003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University