View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14630_low_15 (Length: 239)
Name: NF14630_low_15
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14630_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 679651 - 679874
Alignment:
| Q |
1 |
tactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679651 |
tactttctaacggaaggattccacaacaaataagaaccagcttttagcattcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctc |
679750 |
T |
|
| Q |
101 |
aaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679751 |
aaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc |
679850 |
T |
|
| Q |
201 |
caagttgttccaagaggttatcat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
679851 |
caagttgttccaagaggttatcat |
679874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 747569 - 747792
Alignment:
| Q |
1 |
tactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
747569 |
tactttctaatggaaggattccacaacaaatatgaaccagcttttagcatgcagcaaaagatgccatcgcaagatcacattacgtccacaaagttacctc |
747668 |
T |
|
| Q |
101 |
aaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc |
200 |
Q |
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| T |
747669 |
gaattgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgaggggattggagaaacatactcaactaactcagc |
747768 |
T |
|
| Q |
201 |
caagttgttccaagaggttatcat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
747769 |
caagttgttccaagaggttatcat |
747792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 9595073 - 9595293
Alignment:
| Q |
4 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaa |
103 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||| || || | || ||||| ||||||||||||||||||| ||||||||| | ||| || | |
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| T |
9595073 |
tttctaatggaagggttccacaaaacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcacaatacgtccacgtatttagatccat |
9595172 |
T |
|
| Q |
104 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaa |
203 |
Q |
| |
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|||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || |||| ||| |||||||||||||||| |||||| |||||||| |
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| T |
9595173 |
ttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggagaatcatatagaactaaatcagccaa |
9595272 |
T |
|
| Q |
204 |
gttgttccaagaggttatcat |
224 |
Q |
| |
|
||||||| ||||| |||||| |
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| T |
9595273 |
gttgttcatagaggctatcat |
9595293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 9566320 - 9566432
Alignment:
| Q |
55 |
caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag |
154 |
Q |
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|||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| ||||||| |
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| T |
9566320 |
caaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaag |
9566419 |
T |
|
| Q |
155 |
ttgataaaatcga |
167 |
Q |
| |
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| ||||||||||| |
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| T |
9566420 |
tagataaaatcga |
9566432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
| Q |
4 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacg |
84 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||| | || |||||||||||||||||||||| ||||| |
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|
| T |
2635294 |
tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg |
2635214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 2491648 - 2491494
Alignment:
| Q |
55 |
caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag |
154 |
Q |
| |
|
|||||||||||||| ||| ||||| |||| || ||| ||| || | |||| ||| || |||||||||||||||| || ||||||| ||||||||||| |
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| T |
2491648 |
caaaagatgccatcacaatagcaccttaccaacataaatttatgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaag |
2491549 |
T |
|
| Q |
155 |
ttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgtt |
209 |
Q |
| |
|
| || |||| |||||| ||||| ||||||| | ||| |||||| |||||||||| |
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|
| T |
2491548 |
tagaaaaaagcgagggtattggggaatcatgatgaaccaactcacccaagttgtt |
2491494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 2659674 - 2659752
Alignment:
| Q |
104 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatc |
182 |
Q |
| |
|
|||| ||| |||||||| |||||||||||| |||||||||||||||||||| || ||||| || |||||||||||||| |
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|
| T |
2659674 |
ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaagggattggagaatc |
2659752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 9562507 - 9562601
Alignment:
| Q |
104 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactca |
198 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | |||||||||| |||||| || ||| |||||| |
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|
| T |
9562507 |
ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactca |
9562601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 2476159 - 2476075
Alignment:
| Q |
114 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactca |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| || || | || |||||||| ||||||||| |||||||||| |
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|
| T |
2476159 |
attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactca |
2476075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
| Q |
114 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
186 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| |||||||||||||||||| |
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|
| T |
2630843 |
attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac |
2630771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 2474725 - 2474651
Alignment:
| Q |
4 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
79 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| ||||||||||||||| |||||||||| |
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|
| T |
2474725 |
tttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca |
2474651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 755176 - 755246
Alignment:
| Q |
113 |
tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca |
183 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| |||||| |
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|
| T |
755176 |
tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca |
755246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
| Q |
116 |
taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
186 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||||||||| |
|
|
| T |
2644902 |
taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac |
2644972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 7324862 - 7324932
Alignment:
| Q |
7 |
ctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagca |
77 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| ||||||| |||| |||||||| |||||||| |
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|
| T |
7324862 |
ctaatggaagggttccacaaataataagaaccaactttgagcatgcccaaaaaaatgccatcacaagagca |
7324932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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