View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_low_3 (Length: 521)

Name: NF14630_low_3
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_low_3
NF14630_low_3
[»] chr5 (22 HSPs)
chr5 (9-161)||(40461894-40462046)
chr5 (293-447)||(40335843-40335997)
chr5 (298-410)||(40378347-40378459)
chr5 (80-156)||(40378759-40378835)
chr5 (181-267)||(40378582-40378673)
chr5 (448-501)||(40335571-40335624)
chr5 (25-123)||(21300940-21301035)
chr5 (327-389)||(12975326-12975387)
chr5 (298-386)||(34117569-34117654)
chr5 (9-147)||(137330-137465)
chr5 (300-380)||(2568608-2568689)
chr5 (300-380)||(14295457-14295537)
chr5 (324-379)||(36325986-36326041)
chr5 (349-391)||(30217082-30217124)
chr5 (310-355)||(7470592-7470636)
chr5 (298-390)||(18875310-18875402)
chr5 (334-391)||(18902781-18902837)
chr5 (300-431)||(9202733-9202867)
chr5 (298-370)||(18704085-18704156)
chr5 (324-380)||(18857439-18857494)
chr5 (311-391)||(26390818-26390897)
chr5 (336-438)||(41957430-41957534)
[»] chr8 (18 HSPs)
chr8 (25-147)||(18803026-18803145)
chr8 (25-128)||(15334106-15334206)
chr8 (25-128)||(15423202-15423302)
chr8 (25-128)||(15514475-15514575)
chr8 (29-147)||(14979725-14979843)
chr8 (336-391)||(9836882-9836937)
chr8 (336-391)||(11795079-11795134)
chr8 (342-391)||(8062322-8062371)
chr8 (301-385)||(8823427-8823511)
chr8 (309-368)||(4510988-4511047)
chr8 (324-391)||(6509331-6509397)
chr8 (349-438)||(11569436-11569527)
chr8 (336-391)||(28769367-28769422)
chr8 (298-367)||(12361141-12361210)
chr8 (319-391)||(8062495-8062566)
chr8 (312-391)||(31705047-31705127)
chr8 (308-391)||(34551079-34551162)
chr8 (342-386)||(41470344-41470388)
[»] chr6 (11 HSPs)
chr6 (300-391)||(33787773-33787864)
chr6 (29-144)||(12354278-12354393)
chr6 (61-123)||(2068866-2068928)
chr6 (25-147)||(14963655-14963772)
chr6 (303-391)||(24838771-24838859)
chr6 (300-391)||(24782010-24782101)
chr6 (298-431)||(6647338-6647471)
chr6 (300-370)||(4006665-4006735)
chr6 (308-391)||(281876-281959)
chr6 (312-391)||(10154184-10154263)
chr6 (300-367)||(29274281-29274348)
[»] chr4 (17 HSPs)
chr4 (24-123)||(4104363-4104459)
chr4 (299-391)||(18628571-18628663)
chr4 (298-391)||(30207599-30207691)
chr4 (308-380)||(2996532-2996604)
chr4 (300-411)||(17884019-17884131)
chr4 (298-391)||(49219088-49219181)
chr4 (336-447)||(23819076-23819189)
chr4 (300-343)||(34368828-34368872)
chr4 (9-128)||(35185485-35185602)
chr4 (300-391)||(52735073-52735164)
chr4 (308-380)||(10192243-10192315)
chr4 (300-388)||(54325068-54325156)
chr4 (342-391)||(56480341-56480390)
chr4 (336-388)||(1408327-1408379)
chr4 (311-370)||(3175913-3175972)
chr4 (300-411)||(43824235-43824346)
chr4 (308-387)||(49085948-49086027)
[»] chr7 (15 HSPs)
chr7 (61-123)||(20656579-20656641)
chr7 (25-128)||(48631239-48631339)
chr7 (300-391)||(30456478-30456569)
chr7 (336-409)||(6263373-6263446)
chr7 (302-400)||(28165044-28165142)
chr7 (309-391)||(38010674-38010756)
chr7 (336-386)||(18350740-18350790)
chr7 (300-377)||(27548214-27548291)
chr7 (324-370)||(44821935-44821980)
chr7 (308-380)||(1417223-1417295)
chr7 (300-356)||(35536058-35536114)
chr7 (308-391)||(22759145-22759228)
chr7 (300-391)||(27481322-27481413)
chr7 (298-349)||(39591537-39591588)
chr7 (300-379)||(47177587-47177666)
[»] scaffold0464 (1 HSPs)
scaffold0464 (25-128)||(3897-3997)
[»] chr1 (9 HSPs)
chr1 (298-370)||(49517019-49517091)
chr1 (11-147)||(1394086-1394220)
chr1 (300-391)||(7472263-7472353)
chr1 (324-379)||(25006074-25006128)
chr1 (314-372)||(6231863-6231921)
chr1 (342-447)||(35590863-35590969)
chr1 (312-380)||(4548684-4548752)
chr1 (336-400)||(4549561-4549625)
chr1 (298-385)||(7273973-7274060)
[»] chr2 (12 HSPs)
chr2 (298-388)||(10143121-10143211)
chr2 (336-400)||(35099618-35099682)
chr2 (309-379)||(11513858-11513928)
chr2 (336-379)||(18066115-18066158)
chr2 (336-379)||(18179280-18179323)
chr2 (309-391)||(22681213-22681295)
chr2 (349-391)||(11488277-11488319)
chr2 (336-370)||(15377752-15377786)
chr2 (300-391)||(656805-656896)
chr2 (335-379)||(16353847-16353891)
chr2 (308-391)||(18962066-18962149)
chr2 (336-400)||(43205296-43205360)
[»] chr3 (8 HSPs)
chr3 (324-447)||(37273107-37273234)
chr3 (342-423)||(39602204-39602287)
chr3 (308-389)||(1125796-1125878)
chr3 (313-390)||(2201092-2201169)
chr3 (308-369)||(23530234-23530296)
chr3 (341-391)||(24158531-24158581)
chr3 (300-387)||(24887315-24887402)
chr3 (336-380)||(52618990-52619034)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 40461894 - 40462046
Alignment:
Q  9 aatatctaagtattttctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgtt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40461894 aatatctaagtattttctagtgatgttgcttcaatgatcctcaaggaaatatcttgactcggatgaatatttaccatctcttgttgattctaaatttgtt 40461993  T
Q  109 ggctggaaagaagaataaaataaataagataatgattagcaatatcaagccct 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40461994 ggctggaaagaagaataaaataaataagataatgattagcaatatcaagccct 40462046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 40335997 - 40335843
Alignment:
Q  293 cgtaggttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatt 392  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  40335997 cgtatgttatttctttgacaaaagataaaataagccaaattgtttttcatataagttataagctgctttcataagctatcttggaaagcttatggaaatt 40335898  T
Q  393 tgttgaaacaacttatgaaatgtcataagctctttccataaactctaccgaacag 447  Q
    || ||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  40335897 tgctgaaacaacttatgaaaagtcacaagctctttccataaactctaccaaacag 40335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 298 - 410
Target Start/End: Complemental strand, 40378459 - 40378347
Alignment:
Q  298 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg 397  Q
    ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40378459 gttatctctttaacgaaagataaaacaagccaaactgtatttcatataagttataagctgctatcataaactaacttggagagattatggaaatttgttg 40378360  T
Q  398 aaacaacttatga 410  Q
    |||||||||||||    
T  40378359 aaacaacttatga 40378347  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 40378835 - 40378759
Alignment:
Q  80 taccatctcttgttgattctaaatttgttggctggaaagaagaataaaataaataagataatgattagcaatatcaa 156  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  40378835 taccatctcttgctgattctaaatttgttggctggaaagaagaaaaaaataagtaagacaatgattagcaatatcaa 40378759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 40378673 - 40378582
Alignment:
Q  181 gtcgaggaacaaaggaacaagatacaaacaaaagaacaaaatacgacattatatgtcca-----agctatgtactaaaacataaaagcaaaa 267  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||     ||||||| ||||||||||||||||||||    
T  40378673 gtcgaggaacaaagtaacaagatacaaacaaaagaacaaaatacaacattatatgtccaactccagctatggactaaaacataaaagcaaaa 40378582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 40335624 - 40335571
Alignment:
Q  448 gtggtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagt 501  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  40335624 gtggtataatagtaacaaggctcaccaaggtgcaggggatgatatgatgacagt 40335571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 21300940 - 21301035
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaa 123  Q
    |||||||||||||||||||||||||| | |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||    
T  21300940 ctagtgatgttgcttcaatgatcctccaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaa 21301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 12975326 - 12975387
Alignment:
Q  327 tcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaa 389  Q
    |||||||||||| |||||||| |||||||||  ||||||||||| ||||||||| ||||||||    
T  12975326 tcaaattgtttt-catataagctataagctgtgttcataagctatcttggagagcttatggaa 12975387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 34117654 - 34117569
Alignment:
Q  298 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatg 386  Q
    ||||||||||||||||||||||||| |||  |   |  ||| |||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  34117654 gttatttctttaacaaaagataaaataaggta---ttatttacatataagctataagttgctttcataagctatcttggagagcttatg 34117569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 137465 - 137330
Alignment:
Q  9 aatatctaagtattttctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgtt 108  Q
    ||||||||| ||||  ||| |||||||||||||||||||||| | |   || |||||||  ||||||| | |||||||||||||   |||||||||||||    
T  137465 aatatctaaatattccctaatgatgttgcttcaatgatcctcgaggcggtagctagacttcgatgaatgtctaccatctcttgt---ttctaaatttgtt 137369  T
Q  109 ggctggaaagaagaa-taaaataaataagataatgattag 147  Q
    || | ||| ||||||  |||||||| |||| |||||||||    
T  137368 gg-ttgaatgaagaagaaaaataaagaagacaatgattag 137330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 2568608 - 2568689
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||||| |||||| | ||||||||| || |||||||||||| |||||| |||||| || |||||||||||| | |||||||    
T  2568608 tatttctataacaagatataaaacaaagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagag 2568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 14295457 - 14295537
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||||| ||||||||||||||| || |||||| |||||| |||||||| ||||||||| |||| ||||||| | |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgtttt-catataagctataagctgttttcgtaagctatcctggagag 14295537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 36325986 - 36326041
Alignment:
Q  324 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    ||||||| ||||||||  ||||||||||||| ||||||| ||||||| ||||||||    
T  36325986 aagtcaatttgttttttgtataagttataagttgctttcgtaagctatcttggaga 36326041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 30217082 - 30217124
Alignment:
Q  349 tataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  30217082 tataagctgctttcataagctatcctggagagcttatggaaat 30217124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 7470636 - 7470592
Alignment:
Q  310 acaaaagataaaacaagtcaaattgtttttcatataagttataagc 355  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||    
T  7470636 acaaaagataaaaaaagtcaaatt-attttcatataagttataagc 7470592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 18875310 - 18875402
Alignment:
Q  298 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaa 390  Q
    ||||||||| || ||||||| |||| || ||||||||| ||| |||| ||||||||||||| ||| ||||| || | ||||||| |||||||||    
T  18875310 gttatttctatatcaaaagacaaaataaagtcaaattgattt-catacaagttataagctgttttaataagatatcctggagagcttatggaaa 18875402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 18902781 - 18902837
Alignment:
Q  334 gtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||||| |||||||||| |||||||||||  |||| ||| ||||||||||    
T  18902781 gtttttcatataagctataagctgc-ttcataagctattttggggagcttatggaaat 18902837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 431
Target Start/End: Complemental strand, 9202867 - 9202733
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttg-ttg 397  Q
    ||||||| || |||||||||||| || || |||||||||| ||||||||  |||||||| ||||||||| || |||| |||  ||||| ||||  | | |    
T  9202867 tatttctgtagcaaaagataaaataaagttaaattgtttt-catataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctgg 9202769  T
Q  398 aaacaacttatga--aatgtcataagctctttccat 431  Q
    ||||| |||||||  ||||||||||||| |||||||    
T  9202768 aaacagcttatgaacaatgtcataagctgtttccat 9202733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 18704156 - 18704085
Alignment:
Q  298 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagcta 370  Q
    ||||||||| ||||||||||||||  |||||||  | ||||| ||||||| |||||| || ||||||||||||    
T  18704156 gttatttctataacaaaagataaataaagtcaagctattttt-atataagctataagttgttttcataagcta 18704085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 18857494 - 18857439
Alignment:
Q  324 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||||  |||||||||    
T  18857494 aagtcaaattgtttttc-tataatctataagctgttttcataagctgtcttggagag 18857439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 26390897 - 26390818
Alignment:
Q  311 caaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||| |||| ||| |||||| |||||||| |||||| || |||| |||| || | ||||||| ||||||||||    
T  26390897 caaaagataaaataagttaaactgtttt-catataagctataagatggtttcctaagttatcctggagagcttatggaaat 26390818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 438
Target Start/End: Complemental strand, 41957534 - 41957430
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcataagctctttccataa 433  Q
    ||||||| |||||||||||||| |||||||||||| | | ||||  ||||| ||||  | || ||||||||||| || |||||||||||| ||||| |||    
T  41957534 ttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaa 41957435  T
Q  434 actct 438  Q
     ||||    
T  41957434 gctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 18803145 - 18803026
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    |||||||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||     
T  18803145 ctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaaa 18803049  T
Q  125 aaaataaataagataatgattag 147  Q
    |||| ||| ||||||||||||||    
T  18803048 aaaaaaaaaaagataatgattag 18803026  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 15334206 - 15334106
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    |||||||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||     
T  15334206 ctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaaa 15334110  T
Q  125 aaaa 128  Q
    ||||    
T  15334109 aaaa 15334106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 15423302 - 15423202
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    |||||||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||     
T  15423302 ctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaaa 15423206  T
Q  125 aaaa 128  Q
    ||||    
T  15423205 aaaa 15423202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 15514575 - 15514475
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    |||||||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||     
T  15514575 ctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaaa 15514479  T
Q  125 aaaa 128  Q
    ||||    
T  15514478 aaaa 15514475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 14979725 - 14979843
Alignment:
Q  29 tgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctgga---aagaagaata 125  Q
    |||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |   |||||||| |    
T  14979725 tgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaagaaga 14979821  T
Q  126 aaataaataagataatgattag 147  Q
    ||| |||||||| |||||||||    
T  14979822 aaaaaaataagacaatgattag 14979843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 9836937 - 9836882
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||| || ||| |||||||||||| ||||||||| ||||||||||    
T  9836937 ttttcatataagttacaacctgttttcataagctatcttggagagcttatggaaat 9836882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 11795079 - 11795134
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||||||||||||| ||||||||||||   ||||||| ||||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatggaaat 11795134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 8062322 - 8062371
Alignment:
Q  342 tataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatggaaat 8062371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 8823511 - 8823427
Alignment:
Q  301 atttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattat 385  Q
    |||||| |||||||||||||||||| |||| |||||| || || |||||||||| || ||||||||||||| ||||| ||| ||||    
T  8823511 atttctataacaaaagataaaacaaagtcagattgttctt-atgtaagttataatctactttcataagctatcttggcgagcttat 8823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 4510988 - 4511047
Alignment:
Q  309 aacaaaagat-aaaacaagtcaaattgtttttcatataagttataagctgctttcataagc 368  Q
    |||||||||| |||| |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  4510988 aacaaaagattaaaaaaagtcaaatt-tttctcatataagttataagctgttttcataagc 4511047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 6509397 - 6509331
Alignment:
Q  324 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||| ||| ||||||| ||||||||| |||||||||||| | ||||||| |||| |||||    
T  6509397 aagtcaaattgtattt-atataagctataagctgttttcataagctatcctggagagcttattgaaat 6509331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 11569527 - 11569436
Alignment:
Q  349 tataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatg-aaatgtcataagctctttccataaactct 438  Q
    ||||||||| |||||||||||| | |||||||||| || ||||  | || |||||||||||| | |||||||||||| ||||||||| ||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 28769422 - 28769367
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||| |||||| ||||||||| ||||||||||||  |||||||| ||||||||||    
T  28769422 ttttcttataagctataagctgttttcataagctattttggagagtttatggaaat 28769367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 12361141 - 12361210
Alignment:
Q  298 gttatttctttaacaaaagataaaac-aagtcaaattgtttttcatataagttataagctgctttcataag 367  Q
    ||||||||| |||  ||||||||||  ||||||||||||||| |||||||| ||||||||| |||||||||    
T  12361141 gttatttctataaataaagataaaatgaagtcaaattgtttt-catataagctataagctgttttcataag 12361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 8062495 - 8062566
Alignment:
Q  319 aaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||| ||||||||||||||| |||||||| |||||| || | |||||||||| ||| ||||| ||||| ||||    
T  8062495 aaaaaaagtcaaattgtttt-catataagctataagatgttctcataagctatcttagagagtttatgaaaat 8062566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 31705047 - 31705127
Alignment:
Q  312 aaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||| || ||||||||   ||||||||||| ||||||||| |||||||||||  | | ||||| ||||||||||    
T  31705047 aaaagataaaatcatgtcaaattacgtttcatataagctataagctgttttcataagctgtccttgagagtttatggaaat 31705127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 34551079 - 34551162
Alignment:
Q  308 taacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||| | |||||||||||||||| ||| ||||||||||| || |||| |||| || | ||||||| ||||| ||||    
T  34551079 taacaaaagataacatcaagtcaaattgtttt-catttaagttataagttgttttcttaagttatcctggagagcttatgaaaat 34551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 41470388 - 41470344
Alignment:
Q  342 tataagttataagctgctttcataagctaacttggagagattatg 386  Q
    |||||||| ||||||| |||||||||||| |||| ||||||||||    
T  41470388 tataagttgtaagctgttttcataagctatcttgaagagattatg 41470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 33787864 - 33787773
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| |||||||| ||||||||| ||||||||| ||| |||||||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  33787864 tatttctataacaaaatataaaacaaagtcaaattgattt-catataagttataagctgttttcataagttatcttggagagcttatggaaat 33787773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 12354278 - 12354393
Alignment:
Q  29 tgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaa-taaa 127  Q
    |||||||||||||||||||||||| |   || ||| ||||  |||||| | ||| ||||||||||| |||||||||||||||||| |||||||||  |||    
T  12354278 tgatgttgcttcaatgatcctcaacgcggtagctaaactcatatgaatgtctac-atctcttgttgtttctaaatttgttggctgaaaagaagaagaaaa 12354376  T
Q  128 ataaataagataatgat 144  Q
    |||||||||| ||||||    
T  12354377 ataaataagacaatgat 12354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 2068866 - 2068928
Alignment:
Q  61 ctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaa 123  Q
    |||||||  ||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  2068866 ctagactaagatgaatgtctaccatctcttgctgattctaaatttgttggctggaaagaagaa 2068928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 14963772 - 14963655
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    ||||||||||||||||| ||||| |||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||       
T  14963772 ctagtgatgttgcttcagtgatcatcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaag--g 14963678  T
Q  125 aaaataaataagataatgattag 147  Q
    |||| ||||||||||||||||||    
T  14963677 aaaaaaaataagataatgattag 14963655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 24838859 - 24838771
Alignment:
Q  303 ttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||||||||||| | | |||| |||| |||||||| ||||||||| |||||||||||| | ||||||| |||| |||||    
T  24838859 ttctttaacaaaagataaaacaaagactaattatttt-catataagctataagctgatttcataagctatcatggagagcttatagaaat 24838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 24782010 - 24782101
Alignment:
Q  300 tatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||| |||| ||| | | ||||| ||||| ||||    
T  24782010 tatttctataacaaaagataaaatcaaatcaaattgtttt-catataagttataagctactttaataaactatccttgagagcttatgaaaat 24782101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 431
Target Start/End: Original strand, 6647338 - 6647471
Alignment:
Q  298 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg 397  Q
    ||||||||| |||||||| |||| | ||||||||||  |||  ||||| ||||||| ||| |||||||||||| ||| ||||| ||||| ||||  ||||    
T  6647338 gttatttctataacaaaaaataata-aagtcaaattacttta-atataggttataatctgttttcataagctatcttagagagcttatgaaaataagttg 6647435  T
Q  398 -aaacaacttatgaa-atgtcataagctctttccat 431  Q
     ||||| |||||||| |||||||||||| |||||||    
T  6647436 aaaacatcttatgaacatgtcataagctatttccat 6647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 4006665 - 4006735
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 370  Q
    ||||||| ||||||| ||||||| || |||||||||||||| ||||||| |||||| || ||||||||||||    
T  4006665 tatttctataacaaatgataaaataaagtcaaattgttttt-atataagctataagttgttttcataagcta 4006735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 281959 - 281876
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||| || ||||| ||||||| |||||||| |||||||||  ||||||||||| | | ||||| | ||||||||    
T  281959 taacaaaagataaaataaagtcaacttgtttt-catataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 10154184 - 10154263
Alignment:
Q  312 aaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||| |||||||| |||| | || | || ||||||||||    
T  10154184 aaaagataaaataaagtcaaactgtttt-catataagttataagctactttcataggctagcatgaaaagcttatggaaat 10154263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 29274348 - 29274281
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataag 367  Q
    ||||||| || |||||||||||| || ||||||||||||| |||||||| ||||| ||| |||||||||    
T  29274348 tatttctatagcaaaagataaaataaagtcaaattgtttt-catataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 4104459 - 4104363
Alignment:
Q  24 tctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaa 123  Q
    ||||||||||||||||||||||||||||| |   |  |||||||| ||||||| | ||||||||||||||   ||||||||||||||||| |||||||||    
T  4104459 tctagtgatgttgcttcaatgatcctcaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaaatttgttggctgaaaagaagaa 4104363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 391
Target Start/End: Complemental strand, 18628663 - 18628571
Alignment:
Q  299 ttatttctttaacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||||||  |||| | ||||||| ||||||| ||||||||||||| ||| ||||||||| || ||||||||| ||||||||||    
T  18628663 ttatttctttaacaaaaggaaaaatatagtcaaactgttttt-atataagttataaactgttttcataagttatcttggagagcttatggaaat 18628571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 391
Target Start/End: Complemental strand, 30207691 - 30207599
Alignment:
Q  298 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||| |||| |||||||| |||||| || ||||| |||||| |||||||| |||||| || |||||||||||| ||| ||||||||||||||||    
T  30207691 gttagttctataacaaaaaataaaataaatcaaactgtttt-catataagctataagttgttttcataagctaccttagagagattatggaaat 30207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 2996532 - 2996604
Alignment:
Q  308 taacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||||||| || |||||||||||| |||||||||    
T  2996532 taacataagataaaatacagtcaaattgttttt-atataagttataagttgttttcataagctatcttggagag 2996604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 17884019 - 17884131
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg- 397  Q
    ||||||| ||||||||||||||| || || |||||||||||  |||||||||| || || ||||||||||||  |||||||| ||||| ||||| | ||     
T  17884019 tatttctataacaaaagataaaataaagttaaattgtttttg-tataagttatcagttgttttcataagctatattggagagcttatgaaaattagctga 17884117  T
Q  398 aaacaacttatgaa 411  Q
    ||||||||||||||    
T  17884118 aaacaacttatgaa 17884131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 391
Target Start/End: Original strand, 49219088 - 49219181
Alignment:
Q  298 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||| |||||||| |||||| || |||||||| |||| |||||||| |||||| || |||||||| ||| |||  |||||||||||||||    
T  49219088 gttatttctataacaaaatataaaataaagtcaaattatttt-catataagctataagttgttttcataaactatcttaaagagattatggaaat 49219181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 23819076 - 23819189
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcataagctctttccataa 433  Q
    ||||||||||||||||||  || |||||||||||| |||| |||| |||| |||||  | || ||||||||||| || |||||||||||| ||| | |||    
T  23819076 ttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaa 23819175  T
Q  434 actctaccgaacag 447  Q
    ||||| || |||||    
T  23819176 actcttccaaacag 23819189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 34368828 - 34368872
Alignment:
Q  300 tatttctttaacaaaagataaaac-aagtcaaattgtttttcata 343  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  34368828 tatttctataacaaaagataaaacaaagtcaaattgtttttcata 34368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 35185602 - 35185485
Alignment:
Q  9 aatatctaagtattttctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgtt 108  Q
    ||||||||| ||||  |||||||||||||||| |||||| || | |   || |||||||| |||||||   ||||||||| | ||  |||||||||||||    
T  35185602 aatatctaaatattccctagtgatgttgcttcgatgatcatcgaggcggtagctagactccgatgaatgcctaccatctcctttt--ttctaaatttgtt 35185505  T
Q  109 ggctggaaagaagaataaaa 128  Q
    ||||| ||||||||| ||||    
T  35185504 ggctgaaaagaagaagaaaa 35185485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 52735073 - 52735164
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| ||||||||||||||| || ||||||||  ||| ||||||||||||| | || |||| ||||||| |||| |||| ||||||||||    
T  52735073 tatttctgtaacaaaagataaaataaagtcaaattacttt-catataagttatatgttgttttcgtaagctatcttgaagagcttatggaaat 52735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 10192243 - 10192315
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    |||||||||||| || || ||||||||||||| ||||||||||||||| || ||||| |||||| | |||||||    
T  10192243 taacaaaagatagaataaagtcaaattgtttt-catataagttataagttgttttcaaaagctatcctggagag 10192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 54325156 - 54325068
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgga 388  Q
    ||||||| | ||||||||||||| || |||||| |||||| |||||||| ||||||||  ||||| |||||| | ||||||| |||||||    
T  54325156 tatttctattacaaaagataaaataaagtcaaactgtttt-catataagctataagctattttcaaaagctatcatggagagtttatgga 54325068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 56480341 - 56480390
Alignment:
Q  342 tataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||| ||||    
T  56480341 tataagttataagctgttttcataaactatcttggagagcttatgaaaat 56480390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 1408379 - 1408327
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatgga 388  Q
    ||||| |||||  |||||| ||||||||||||||||||| ||||| |||||||    
T  1408379 ttttcgtataatctataagttgctttcataagctaacttcgagagtttatgga 1408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 3175913 - 3175972
Alignment:
Q  311 caaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 370  Q
    |||||||||||| || ||||||||||||| ||  |||||||||||||| ||||||||||||    
T  3175913 caaaagataaaataaagtcaaattgtttt-caagtaagttataagctgttttcataagcta 3175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 43824235 - 43824346
Alignment:
Q  300 tatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-a 398  Q
    |||||||||| ||||||||||   || ||||||| |||| |||||||||||||||||  |||| |||| || | |||| || ||||||||||  | || |    
T  43824235 tatttctttagcaaaagataattaaaatcaaattctttt-catataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaa 43824333  T
Q  399 aacaacttatgaa 411  Q
    |||||||||||||    
T  43824334 aacaacttatgaa 43824346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 49085948 - 49086027
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgg 387  Q
    ||||||||||||||| || |||||| | |||| |||| |||||||||| || |||||||||||| ||| ||||| ||||||    
T  49085948 taacaaaagataaaataatgtcaaactatttt-catacaagttataagttgttttcataagctaccttagagagcttatgg 49086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 20656641 - 20656579
Alignment:
Q  61 ctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaa 123  Q
    |||||||  ||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  20656641 ctagacttagatgaatgtctaccatctcttgctgattctaaatttgttggctggaaagaagaa 20656579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 48631339 - 48631239
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    ||||||||||||||||||||||||| || |   |  |||||||| ||||||| | ||||||||||||||   ||||| ||||||||||| |||||||||     
T  48631339 ctagtgatgttgcttcaatgatcctgaaggcggtggctagactcagatgaatgtctaccatctcttgtt---tctaagtttgttggctgaaaagaagaag 48631243  T
Q  125 aaaa 128  Q
    ||||    
T  48631242 aaaa 48631239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 30456569 - 30456478
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||  |||||||||||||| || ||||||||||||| |||||||||||||||  | |||||||| ||| ||||||||| ||||| ||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgtttt-catataagttataagtggttttcataaactatcttggagagcttatgaaaat 30456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 409
Target Start/End: Complemental strand, 6263446 - 6263373
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaacaacttatg 409  Q
    |||||||||||||||||||||| ||||||||||||   |||||||  |||||||||  | | ||||||||||||    
T  6263446 ttttcatataagttataagctgatttcataagctattatggagagcatatggaaataagctaaaacaacttatg 6263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 28165044 - 28165142
Alignment:
Q  302 tttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 400  Q
    ||||| |||||||||||||||  ||||||||||| |||| ||||||| ||||| |||  || |||||||| | ||||||| ||||||||||  |||||||    
T  28165044 tttctataacaaaagataaaatgaagtcaaattg-ttttaatataagctataaactgtctttataagctatcatggagagcttatggaaataagttgaaa 28165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 38010674 - 38010756
Alignment:
Q  309 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||||||| |||||||| ||| | | ||||  ||||||||||    
T  38010674 aacaaaagataaaacaaagccaaattgtttt-catataagctataagctgttttcataatctatcctagagaacttatggaaat 38010756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 18350790 - 18350740
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatg 386  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||| |||||    
T  18350790 ttttcgtataagttataagctgttttcataagctatcatggagagcttatg 18350740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 377
Target Start/End: Original strand, 27548214 - 27548291
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttgga 377  Q
    |||||| ||| |||||||||||| || ||| ||||||||| ||| |||| ||||||||| |||||||||||| ||||||    
T  27548214 tatttccttagcaaaagataaaataaagtctaattgtttt-catttaagctataagctgttttcataagctatcttgga 27548291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 370
Target Start/End: Original strand, 44821935 - 44821980
Alignment:
Q  324 aagtcaaattgtttttcatataagttataagctgctttcataagcta 370  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||    
T  44821935 aagtcaaattgtttttg-tataagttataagctgttttcataagcta 44821980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 1417223 - 1417295
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||||||||||||| || ||||||||||||| ||||||||  ||||| || |||||||||||| | |||||||    
T  1417223 taacaaaagataaaataaagtcaaattgtttt-catataagcaataagttgttttcataagctagcatggagag 1417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 35536058 - 35536114
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagct 356  Q
    ||||||| ||||| ||||||||| || ||||||||||||| |||||||||||||||||    
T  35536058 tatttctataacataagataaaataaagtcaaattgtttt-catataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 22759145 - 22759228
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||| || |  |||||||||| |||||||| || |||||| |||||||||||| |  |||||| ||||||||||    
T  22759145 taacaaaagataaaataaaggaaaattgtttt-catataagctaaaagctgatttcataagctatccaggagagcttatggaaat 22759228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 27481413 - 27481322
Alignment:
Q  300 tatttctttaacaaaagataaaac-aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| ||||||| |||||||| |||||||| |||||  |||||||| |||||| |  |||||||||||| | |||| || ||||||||||    
T  27481413 tatttctataacaaaggataaaacgaagtcaaactgtttc-catataagctataagttattttcataagctatcatggatagcttatggaaat 27481322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 39591588 - 39591537
Alignment:
Q  298 gttatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagtt 349  Q
    ||||||||| |||||||||||||||  ||||||||||| ||||||||||||||    
T  39591588 gttatttctataacaaaagataaaataaagtcaaattg-ttttcatataagtt 39591537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 47177587 - 47177666
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    ||||||| || ||||| | ||||||| || |||||||||| |||||||| ||||||||| ||||| |||||| ||||||||    
T  47177587 tatttctatatcaaaatacaaaacaaagttaaattgtttt-catataagctataagctgttttcaaaagctatcttggaga 47177666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 3997 - 3897
Alignment:
Q  25 ctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttggctggaaagaagaat 124  Q
    |||||||||||||||||||| ||||||| |   |  |||||||| ||||||| | ||| ||||||||||   ||||||||||||||||| |||||||||     
T  3997 ctagtgatgttgcttcaatggtcctcaaggcggtggctagactcagatgaatgtctactatctcttgtt---tctaaatttgttggctgaaaagaagaag 3901  T
Q  125 aaaa 128  Q
    ||||    
T  3900 aaaa 3897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 49517019 - 49517091
Alignment:
Q  298 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 370  Q
    ||||||||| ||||||||||||||| || ||||||||||||| ||| |||| ||||||||| ||||||||||||    
T  49517019 gttatttctataacaaaagataaaataaagtcaaattgtttt-catttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 1394220 - 1394086
Alignment:
Q  11 tatctaagtattttctagtgatgttgcttcaatgatcctcaaagaaatatctagactcggatgaatatttaccatctcttgttgattctaaatttgttgg 110  Q
    ||||||| ||||  || ||| |||||||| |||||||||| | |   || ||||||||  |||||| | ||||||||||||||   ||||||||||||||    
T  1394220 tatctaaatattccctggtggtgttgctttaatgatcctcgaggcggtagctagactcctatgaatgtctaccatctcttgtt---tctaaatttgttgg 1394124  T
Q  111 ctggaaagaagaa-taaaataaataagataatgattag 147  Q
    ||| ||| |||||  ||||||||||||| |||||||||    
T  1394123 ctgaaaacaagaagaaaaataaataagacaatgattag 1394086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 7472263 - 7472353
Alignment:
Q  300 tatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| |||||||||||| || |||| |||||||||||  |||||  ||||||||| || ||||||||| ||||||||| ||||| ||||    
T  7472263 tatttctataacaaaagatataataagttaaattgttttt-gtataatctataagctgtttccataagctatcttggagagcttatgaaaat 7472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 25006128 - 25006074
Alignment:
Q  324 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    ||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||    
T  25006128 aagtcaaattgtttt-catataagctataagttgttttcataagctatcttggaga 25006074  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 6231921 - 6231863
Alignment:
Q  314 aagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaac 372  Q
    ||||||||  |||||||| ||||||||||||||  ||||||||| |||| |||||||||    
T  6231921 aagataaataaagtcaaactgtttttcatataatctataagctgttttcgtaagctaac 6231863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 447
Target Start/End: Complemental strand, 35590969 - 35590863
Alignment:
Q  342 tataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatgaaatgtcataagctctttccataaactctac 440  Q
    |||||| ||||||  | |||||||||||| | ||||||| ||||||||||  | || |||||||| ||||| || |||| ||| ||||||||| ||||||    
T  35590969 tataagctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaacaactgatgaactgccatatgctgtttccataagctctac 35590870  T
Q  441 cgaacag 447  Q
    | |||||    
T  35590869 caaacag 35590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 4548684 - 4548752
Alignment:
Q  312 aaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    ||||||||||| || |||||| ||||||| ||| |||| |||||||| |||||||||||| |||||||||    
T  4548684 aaaagataaaataaagtcaaactgttttt-atacaagtcataagctgttttcataagctatcttggagag 4548752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 4549625 - 4549561
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 400  Q
    |||||||| ||| |||||| || |||||||||| | | ||||||| |||| ||||||||||||||    
T  4549625 ttttcatacaagctataagatgttttcataagcaatcctggagagcttattgaaatttgttgaaa 4549561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 7274060 - 7273973
Alignment:
Q  298 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattat 385  Q
    ||||||| | ||||||||||| ||| || ||||||||||||| |||| ||||||||||||| || ||||| ||| |||| |||| ||||    
T  7274060 gttatttttataacaaaagatgaaataaagtcaaattgtttt-catacaagttataagctgtttccataaactaccttgaagagcttat 7273973  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 10143121 - 10143211
Alignment:
Q  298 gttatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgga 388  Q
    ||||||||| |||||||||||||||  |||||||| ||||||| ||||||| |||||| |  |||||||||||| | ||||||| |||||||    
T  10143121 gttatttctataacaaaagataaaattaagtcaaactgttttt-atataagctataagtttttttcataagctatcatggagagtttatgga 10143211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 35099682 - 35099618
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 400  Q
    |||||||  |||||||||||||||||||||||||| | | ||||| ||||||||||  |||||||    
T  35099682 ttttcattaaagttataagctgctttcataagctatccttgagagcttatggaaatcggttgaaa 35099618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 11513858 - 11513928
Alignment:
Q  309 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    |||||||||||||| || ||||||||||||| |||||||| |||||| || |||||||||||| | ||||||    
T  11513858 aacaaaagataaaataaagtcaaattgtttt-catataagctataagttgttttcataagctatcatggaga 11513928  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 18066115 - 18066158
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  18066115 ttttcatataagctataagctgttttcataagctatcttggaga 18066158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 18179323 - 18179280
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    |||||||||||| |||||||||||||||||||||| | ||||||    
T  18179323 ttttcatataagctataagctgctttcataagctatcctggaga 18179280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 391
Target Start/End: Complemental strand, 22681295 - 22681213
Alignment:
Q  309 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||||||| |||||||| ||| | | ||||  ||||||||||    
T  22681295 aacaaaagataaaacaaagccaaattgtttt-catataagctataagctgttttcataatctatcctagagaacttatggaaat 22681213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 11488277 - 11488319
Alignment:
Q  349 tataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  11488277 tataagctgctttcataagctatcctggagagattatgcaaat 11488319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 15377752 - 15377786
Alignment:
Q  336 ttttcatataagttataagctgctttcataagcta 370  Q
    |||||||||||||||||||||| ||||||||||||    
T  15377752 ttttcatataagttataagctgttttcataagcta 15377786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 656896 - 656805
Alignment:
Q  300 tatttctttaacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||| ||||||||||||||| | | |||||||||||| | |||||| | |||| || |||||||||||| |||| |||| ||||| ||||    
T  656896 tatttctataacaaaagataaaatataatcaaattgtttt-cgtataagctgtaagttgatttcataagctatcttgcagagcttatgaaaat 656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 16353847 - 16353891
Alignment:
Q  335 tttttcatataagttataagctgctttcataagctaacttggaga 379  Q
    ||||||||||||| ||||||||| ||| |||||||| ||||||||    
T  16353847 tttttcatataagctataagctgtttttataagctatcttggaga 16353891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 18962149 - 18962066
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    ||||||||||||||| || || ||| |||||| |||||||| ||||| ||  |||||||||||| | |||||||| |||||||||    
T  18962149 taacaaaagataaaataaagttaaactgtttt-catataagctataaactattttcataagctatcatggagagactatggaaat 18962066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 400
Target Start/End: Original strand, 43205296 - 43205360
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 400  Q
    |||||||||||| ||||| ||| |||||||||||| |  |||||| ||||||||||  |||||||    
T  43205296 ttttcatataagatataatctgttttcataagctatcacggagagcttatggaaataagttgaaa 43205360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 37273107 - 37273234
Alignment:
Q  324 aagtcaaattgtttttcatataagttataag---ctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcat 418  Q
    |||||||||||||||| ||||||| |||||    ||| |||||||||||| ||||||||  ||||||||||  |||| ||||||||||| || |||||||    
T  37273107 aagtcaaattgttttt-atataagatataataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcat 37273205  T
Q  419 aagctctttccataaactctaccgaacag 447  Q
    ||| | ||||||||| |||| || |||||    
T  37273206 aagttgtttccataagctctcccaaacag 37273234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 39602287 - 39602204
Alignment:
Q  342 tataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatgaa-atgtcataagct 423  Q
    |||||||||||||||| |||||||||||| ||| ||||  ||||| ||||  |||| |||||| ||||||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagct 39602204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 1125878 - 1125796
Alignment:
Q  308 taacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaa 389  Q
    |||| |||||||||| ||| ||||| ||||||||||||||| |||||  || |||| |||| || ||||||||| ||||||||    
T  1125878 taactaaagataaaatcaattcaaactgtttttcatataagctataacttgttttcttaagttatcttggagagcttatggaa 1125796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 2201092 - 2201169
Alignment:
Q  313 aaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaa 390  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||||| |||||| ||||| |||||| || ||| |||||    
T  2201092 aaagataaaacaaagtcaaactgtttt-catataagctataagctgttttcattagctatcttggatagtttaaggaaa 2201169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 23530296 - 23530234
Alignment:
Q  308 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagct 369  Q
    ||||||||||||||| || |||||||| ||||||||||||  |||||| || |||||||||||    
T  23530296 taacaaaagataaaataaagtcaaattatttttcatataaagtataagttgttttcataagct 23530234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 24158581 - 24158531
Alignment:
Q  341 atataagttataagctgctttcataagctaacttggagagattatggaaat 391  Q
    |||||||| |||||||| |||||||||||| | ||||||| ||||||||||    
T  24158581 atataagtaataagctgttttcataagctatcctggagagcttatggaaat 24158531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 24887402 - 24887315
Alignment:
Q  300 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgg 387  Q
    ||||||| |||||| |||||||| || |||||| ||| || |||||||| || |||||| |||||||||||| | ||||||| ||||||    
T  24887402 tatttctataacaatagataaaataaagtcaaactgtatt-catataagctaaaagctgttttcataagctatcctggagagcttatgg 24887315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 52618990 - 52619034
Alignment:
Q  336 ttttcatataagttataagctgctttcataagctaacttggagag 380  Q
    |||||||||||||||||||||| ||||| |||||| |||| ||||    
T  52618990 ttttcatataagttataagctgttttcacaagctatcttgaagag 52619034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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