View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_low_4 (Length: 492)

Name: NF14630_low_4
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_low_4
NF14630_low_4
[»] chr4 (10 HSPs)
chr4 (1-478)||(39082178-39082655)
chr4 (1-457)||(39087853-39088309)
chr4 (1-468)||(39091233-39091700)
chr4 (79-479)||(39070773-39071173)
chr4 (241-431)||(39097556-39097746)
chr4 (254-302)||(7615241-7615289)
chr4 (366-463)||(39080265-39080362)
chr4 (263-302)||(7637055-7637094)
chr4 (264-302)||(7656227-7656265)
chr4 (367-432)||(39075094-39075159)
[»] scaffold0190 (2 HSPs)
scaffold0190 (263-399)||(4356-4492)
scaffold0190 (122-163)||(4589-4630)
[»] chr8 (3 HSPs)
chr8 (263-333)||(15745030-15745100)
chr8 (311-362)||(15196291-15196342)
chr8 (110-163)||(15744880-15744933)
[»] chr7 (1 HSPs)
chr7 (254-307)||(8936172-8936225)
[»] chr3 (1 HSPs)
chr3 (263-296)||(40147454-40147487)
[»] chr6 (1 HSPs)
chr6 (263-299)||(6500493-6500529)


Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 39082655 - 39082178
Alignment:
Q  1 ataggagttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082655 ataggtgttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg 39082556  T
Q  101 aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  39082555 aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcgttctgatgagaaaataagggatgattatgagtgttggttgagaatgcc 39082456  T
Q  201 gaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaag 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39082455 gaagttatttgaagttggtaatttggcaggtagcaattcattggcgacgagtagttctcagaggtttgatgtttatggtaatgattttggttgggggaag 39082356  T
Q  301 ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtcttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082355 ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtcttt 39082256  T
Q  401 ctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgactggtattttt 478  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39082255 ctttcgagatattggaggctttgggaaatgatgccgagttcttggttcctagttctaagtaatctgactggtattttt 39082178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 39088309 - 39087853
Alignment:
Q  1 ataggagttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg 100  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||| | |||||||||||||  |||||||||||||    
T  39088309 ataggtgttagaccaaggatgactcctccacttgacgaggattattttggaaatgcagggatcattggtagtgtaacaatgaaagcaggggagattctgg 39088210  T
Q  101 aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgcc 200  Q
    |||||||||| ||||||  | | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  39088209 aatgtgggataggaaaatgttcattggagatgaacaagatgattatgttacgttctgatgagaaaataagggatgattatgagtgttggttgaaaatgcc 39088110  T
Q  201 gaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaag 300  Q
     ||||| ||||  |||  || ||||||||||   ||||||||||| |||||| ||||||  |||||||||||||||| ||||||||||||||||||||||    
T  39088109 aaagttgtttgggattaatagtttggcaggtgctaattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaag 39088010  T
Q  301 ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtcttt 400  Q
    || |||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  39088009 cctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagattactgtgtttgctggagctgacgaaggtagcattgatattgaagtttgtcttt 39087910  T
Q  401 ctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttcta 457  Q
    |||  ||||| ||||||||||||||||||||||| |||| | |||||||||||||||    
T  39087909 cttatgagattttggaggctttgggaaatgatgctgagttcatggttcctagttcta 39087853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 39091700 - 39091233
Alignment:
Q  1 ataggagttagaccaaggatgattcctccacttgacgagggttattttggaaatgcagcgatctttggtggggtaacaatgaaagtgggggagattctgg 100  Q
    ||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||  | ||  ||||||| |||||||||||||  |||||||||||||    
T  39091700 ataggtgttagaccaaggatgattcctccgcttgaggaggattattttggaaatgcttcaatgattggtggtgtaacaatgaaagcaggggagattctgg 39091601  T
Q  101 aatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgcc 200  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  39091600 aatgtgggattggaaaagttgctttggagttaaacaagatgattatgtcacattctgatgagaaaataagggattactatgagtgttggttgagaatgcc 39091501  T
Q  201 gaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaag 300  Q
    |||| | ||||  |||| |  |||| | ||| | ||| | ||||  || ||| |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  39091500 gaagatttttgggattgatgttttgacgggtggtaatacgttgggaacaagtagttctccgaggtttgatgtttacggtaatgattttggttgggggaag 39091401  T
Q  301 ccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtcttt 400  Q
    || || |||||| || | || ||| | ||||| | |||||| |||||||| |||| |||||| | ||||||||||||||| ||| |||||||||||||||    
T  39091400 cctgtgggggttagatgcggaggtgcgaataagaataatggaaagattaccgtgtttgctggggttgaagaaggtagcatagatgttgaagtttgtcttt 39091301  T
Q  401 ctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgac 468  Q
    |||  ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  39091300 cttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgac 39091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 79 - 479
Target Start/End: Complemental strand, 39071173 - 39070773
Alignment:
Q  79 atgaaagtgggggagattctggaatgtgggattggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgagaaaataagggatgatt 178  Q
    |||||||| |||||| |||| || ||||  || |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| |  |||    
T  39071173 atgaaagtcggggaggttctagagtgtgaaatcggaaaagttgctttggagataaacaagatgattttgttacattctgatgagaaaataaggaaccatt 39071074  T
Q  179 atgagtattggttgagaatgccgaagttatttgaaattggtaatttggcaggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatgg 278  Q
    | |||| |||||||||||  |  | ||| ||  ||| ||||| || |  |||| | |||   ||||| |  ||  |||||| |||||||||||||| |||    
T  39071073 acgagtcttggttgagaacacgcaggttgttccaaagtggtagttcgctaggtggtaataagttggcaatcagcagttctccgaggtttgatgtttttgg 39070974  T
Q  279 taatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagc 378  Q
     ||||||||||| ||||| ||||| || | ||||||||||||| ||   ||||| | |||||| || |||| ||| | |||||| ||||||||||||||     
T  39070973 caatgattttggctggggaaagccagtggcggttcgaagtgggagtggtaataagaataatggaaaaattagtgtttttgctggtgctgaagaaggtagt 39070874  T
Q  379 attgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaatctgactggtattttt 478  Q
    || ||| ||||| ||||||||||||  ||||| ||||||||||||| ||||||||  |||| ||||||||| | ||||||||||| ||||| ||| ||||    
T  39070873 atagatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgttgagttcttggttccaatttctaagtaatgtgacttgtaatttt 39070774  T
Q  479 g 479  Q
    |    
T  39070773 g 39070773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 241 - 431
Target Start/End: Complemental strand, 39097746 - 39097556
Alignment:
Q  241 ttggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatg 340  Q
    ||||| || ||| ||||||  ||||||||||||||||||||||| ||||||||||| ||||| || |  ||| ||||||||||| ||||||||||| |||    
T  39097746 ttggcaactagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaaagtgatg 39097647  T
Q  341 ggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatga 431  Q
    | | ||| ||| ||| |  |||    ||||||||||| |||||| |||||||||| |||||||  || || ||||||||| ||||||||||    
T  39097646 gaacgataactatgtttagtgggatagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatga 39097556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 7615289 - 7615241
Alignment:
Q  254 gttctcagaggtttgatgtttatggtaatgattttggttgggggaagcc 302  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||    
T  7615289 gttctccgtggtttgatgtttatggtaatgattttggttggggaaagcc 7615241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 463
Target Start/End: Complemental strand, 39080362 - 39080265
Alignment:
Q  366 tgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaat 463  Q
    |||||||||||| ||  || ||||  ||||||||||||  || || ||||||||||||||||||||| | |||| | |||||||  ||||||||||||    
T  39080362 tgaagaaggtagtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaat 39080265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 7637094 - 7637055
Alignment:
Q  263 ggtttgatgtttatggtaatgattttggttgggggaagcc 302  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  7637094 ggtttgatgtttatggtaatgattttggatggggaaagcc 7637055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 7656227 - 7656265
Alignment:
Q  264 gtttgatgtttatggtaatgattttggttgggggaagcc 302  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcc 7656265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 39075159 - 39075094
Alignment:
Q  367 gaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgat 432  Q
    |||||||||||  |||||||| ||||||||||| |||  || || ||||||||| |||||||||||    
T  39075159 gaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatgat 39075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 4492 - 4356
Alignment:
Q  263 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctgg 362  Q
    |||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| ||||||  ||||||||| ||    
T  4492 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgcagg 4393  T
Q  363 agctgaagaaggtagcattgatattgaagtttgtctt 399  Q
     |  ||||| |||||||| ||  ||||||| ||||||    
T  4392 tgtagaagatggtagcatggaccttgaagtatgtctt 4356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 4630 - 4589
Alignment:
Q  122 ctttggagatgaacaagatgattatgttgcattctgatgaga 163  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  4630 ctttggagatgaacaagatgattgttttgcactctgatgaga 4589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 15745030 - 15745100
Alignment:
Q  263 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaa 333  Q
    |||||||||||||||| ||||||||||||||||| || || || |||||||||| ||||||| ||||||||    
T  15745030 ggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaataaa 15745100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 15196291 - 15196342
Alignment:
Q  311 ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctgg 362  Q
    ||||||||||  ||||||||||||||||||| ||||||| ||||| ||||||    
T  15196291 ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctgg 15196342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 15744880 - 15744933
Alignment:
Q  110 ttggaaaagttgctttggagatgaacaagatgattatgttgcattctgatgaga 163  Q
    |||| |||| |||||||||||||||||||||||||   ||||| ||||||||||    
T  15744880 ttggtaaaggtgctttggagatgaacaagatgattgctttgcaatctgatgaga 15744933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 8936172 - 8936225
Alignment:
Q  254 gttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtag 307  Q
    |||||| | |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  8936172 gttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtag 8936225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 40147454 - 40147487
Alignment:
Q  263 ggtttgatgtttatggtaatgattttggttgggg 296  Q
    |||||||||||||||||||||||||||| |||||    
T  40147454 ggtttgatgtttatggtaatgattttggatgggg 40147487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 6500529 - 6500493
Alignment:
Q  263 ggtttgatgtttatggtaatgattttggttgggggaa 299  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  6500529 ggtttgatatttatggtaatgattttggatgggggaa 6500493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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