View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14630_low_5 (Length: 442)

Name: NF14630_low_5
Description: NF14630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14630_low_5
NF14630_low_5
[»] chr2 (3 HSPs)
chr2 (5-318)||(43170485-43170799)
chr2 (5-318)||(43217537-43217851)
chr2 (367-425)||(43170848-43170906)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 43170485 - 43170799
Alignment:
Q  5 accatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggggaaacattccaag 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43170485 accatcggaatcactacaaagaacaactatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggggaaacattccaag 43170584  T
Q  105 atatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattgaaattaaaataaagaaatttgta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||    
T  43170585 atatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattgaaattaaaataaa-aaatttgta 43170683  T
Q  203 tgtagtacttcaaatatacaactttttgtttaagtctctaaaaatatttgttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgtt 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43170684 tgtagtacttcaaatatacaacattttgtttaagtctctaaaaatatttgttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgtt 43170783  T
Q  303 ttgatttaagacttgc 318  Q
    ||||||||||||||||    
T  43170784 ttgatttaagacttgc 43170799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 43217851 - 43217537
Alignment:
Q  5 accatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggggaaacattccaag 104  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43217851 accatcggaatcactacaaagaacaacaatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggggaaacattccaag 43217752  T
Q  105 atatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattgaaattaaaataaagaaatttgta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||    
T  43217751 atatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattgaaattaaaataaa-aaatttgta 43217653  T
Q  203 tgtagtacttcaaatatacaactttttgtttaagtctctaaaaatatttgttttacttttcgtccctacaaatttaccacgttttatgtttgatcatgtt 302  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  43217652 tgtagtacttcaaatacacaactttttgtttaagtctctaaaaatatttgttttacttttcgtccttacaaatttaccatgttttatgtttgatcatgtt 43217553  T
Q  303 ttgatttaagacttgc 318  Q
    ||||||||||||||||    
T  43217552 ttgatttaagacttgc 43217537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 43170848 - 43170906
Alignment:
Q  367 gattggatgatgactacattaccaaccaaactctatcatgggttctgaatgctctcctt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43170848 gattggatgatgactacattaccaaccaaactctatcatgggttctgaatgctctcctt 43170906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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