View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14631_high_13 (Length: 235)

Name: NF14631_high_13
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14631_high_13
NF14631_high_13
[»] chr2 (13 HSPs)
chr2 (1-93)||(821274-821366)
chr2 (152-219)||(821148-821215)
chr2 (153-219)||(410254-410320)
chr2 (153-219)||(965465-965531)
chr2 (158-219)||(974016-974077)
chr2 (1-52)||(957894-957945)
chr2 (164-219)||(982091-982146)
chr2 (170-219)||(963580-963629)
chr2 (5-46)||(1400003-1400044)
chr2 (5-46)||(1403721-1403762)
chr2 (153-219)||(824885-824948)
chr2 (171-219)||(989773-989821)
chr2 (181-219)||(1399557-1399595)
[»] chr6 (1 HSPs)
chr6 (153-219)||(10116747-10116813)
[»] chr7 (6 HSPs)
chr7 (158-219)||(1459328-1459389)
chr7 (153-219)||(1446010-1446076)
chr7 (153-215)||(12105277-12105339)
chr7 (170-214)||(1333502-1333546)
chr7 (3-47)||(1459144-1459188)
chr7 (170-214)||(28449797-28449841)
[»] chr1 (1 HSPs)
chr1 (170-219)||(48675483-48675532)
[»] chr5 (1 HSPs)
chr5 (170-215)||(36199119-36199164)
[»] chr3 (1 HSPs)
chr3 (1-54)||(45810296-45810349)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 821366 - 821274
Alignment:
Q  1 atagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaacttctgt 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821366 atagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaacttctgt 821274  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 821215 - 821148
Alignment:
Q  152 ggattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  821215 ggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagc 821148  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 410320 - 410254
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  410320 gattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagc 410254  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 965465 - 965531
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  965465 gattgttaaatttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagc 965531  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 974016 - 974077
Alignment:
Q  158 ttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  974016 ttaaatttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagc 974077  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 957894 - 957945
Alignment:
Q  1 atagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggat 52  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  957894 atagtgcaagttgtaaggtttaatgaaaggcaacttggaactgatttaggat 957945  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 982091 - 982146
Alignment:
Q  164 ttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||||||||||||||| |||||||||||||| |||  |||||||||||||    
T  982091 ttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagc 982146  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 963629 - 963580
Alignment:
Q  170 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||||||||| || |||||||||||||||||||| |||| ||||    
T  963629 aacaaacctgataaagctcgagattttgaagtttagggcagtggtagagc 963580  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1400044 - 1400003
Alignment:
Q  5 tgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  1400044 tgcaagttgtaaggtttaatgaaagacaacttggaacagatt 1400003  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1403762 - 1403721
Alignment:
Q  5 tgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 46  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  1403762 tgcaagttgtaaggtttaatgaaaggcaacttggaactgatt 1403721  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 824948 - 824885
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||||||||   ||||||| |||||||||||||||| ||||| |||||| | |||||||||    
T  824948 gattcttaaacttaa---acaaacccgataaagttcaagattctgaagcttagggaagtggtggagc 824885  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 989773 - 989821
Alignment:
Q  171 acaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||||||||||  ||||||||||| |||||||| |||||||||    
T  989773 acaaacctgataaagttggagattttgaagcttagggcagtggtggagc 989821  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 1399595 - 1399557
Alignment:
Q  181 taaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  1399595 taaaattcaagattttgaagcttagggcaatggtggagc 1399557  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 10116747 - 10116813
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10116747 gattgttaaatttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagc 10116813  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 1459328 - 1459389
Alignment:
Q  158 ttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    ||||| |||| |||||||||||||||||||||||| ||||||| || ||||||| |||||||    
T  1459328 ttaaaattaagaaacaaacctgataaagttcaagagtttgaagcttggggcaatcgtggagc 1459389  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 1446010 - 1446076
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||| ||||| |||| |||||||||||||||| ||||| ||||||||| ||||||||| ||| ||||    
T  1446010 gattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaaaggtagagc 1446076  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 12105339 - 12105277
Alignment:
Q  153 gattcttaaacttaacaaacaaacctgataaagttcaagattttgaagtttagggcaatggtg 215  Q
    |||| ||||| |||| |||||||||||| |||| |||||||||||||| ||||| ||| ||||    
T  12105339 gattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttaggacaaaggtg 12105277  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 1333502 - 1333546
Alignment:
Q  170 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 214  Q
    |||||||||||| |||||||||  ||||||| |||||||||||||    
T  1333502 aacaaacctgatcaagttcaagcctttgaagcttagggcaatggt 1333546  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 1459144 - 1459188
Alignment:
Q  3 agtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt 47  Q
    |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  1459144 agtgcaagttgtaaggtttaataaaaggcaagatggaacagattt 1459188  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 28449797 - 28449841
Alignment:
Q  170 aacaaacctgataaagttcaagattttgaagtttagggcaatggt 214  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||    
T  28449797 aacaaacctgataaagctcaagcttttgaaggttaggacaatggt 28449841  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 48675483 - 48675532
Alignment:
Q  170 aacaaacctgataaagttcaagattttgaagtttagggcaatggtggagc 219  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||||    
T  48675483 aacaaacctgataaagctcgagattttgaagtttagggcagtggtggagc 48675532  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 36199164 - 36199119
Alignment:
Q  170 aacaaacctgataaagttcaagattttgaagtttagggcaatggtg 215  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||    
T  36199164 aacaaacctggtaaagttcaagaatttgaagtttagggcagtggtg 36199119  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45810296 - 45810349
Alignment:
Q  1 atagtgcaagttgtaaggtttaatgaaacgcaacttggaacagatttcggatag 54  Q
    ||||||||||| || ||||||||||||| |||| ||||||||||||| ||||||    
T  45810296 atagtgcaagtcgtgaggtttaatgaaaggcaagttggaacagattttggatag 45810349  T

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