View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14631_high_2 (Length: 547)
Name: NF14631_high_2
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 24630380 - 24630793
Alignment:
| Q |
13 |
tttacatactctaaggttggttttgtttggaatatattattctaaagcttttatttagtacatgattctat------tacctaatcatcatcttactaat |
106 |
Q |
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| T |
24630380 |
tttacatactctaaggttggttttgtttggaatatattattctaaagcttttatttagtatatgattctatgattgttacctaatca---tcttactaat |
24630476 |
T |
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| Q |
107 |
accttataaaattattttttaatcataataaatcataattagatctcttagtaatgccacatgctcttcaatgtgcatttcctcataaagtttgacttgt |
206 |
Q |
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| T |
24630477 |
accttataaaattattttttaatcataataaatcataattagatctcttagtaatgccacatgctcttcaatgtgcttttcctcttaaagtttgacttgt |
24630576 |
T |
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| Q |
207 |
acacatgattgaaataagttgcatctattatagtatgatgatctttacctaa----tgatcttcctaataggcttttaagatgctttttattgactaaat |
302 |
Q |
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| T |
24630577 |
acacatgattgaaataagttgcatctattatagtatgatgatctttacctaattatttatttgcctaataggcttttaagatgctttttattgactaaat |
24630676 |
T |
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| Q |
303 |
ctggcaaagtagaatcacatagatacattcatatgtattattatgtacattcgagtttacattaatatggtgtgacacatttgaccgatacgataaatat |
402 |
Q |
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| T |
24630677 |
ctgccaaagtagaatcacttagatacatttatatgtattattatgtacattcgagtttacattaatatggtgtgacacatttgaccgatacgataagtat |
24630776 |
T |
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| Q |
403 |
atggttagaaattcgat |
419 |
Q |
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| T |
24630777 |
atggttagaaattcgat |
24630793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 465 - 547
Target Start/End: Original strand, 24630806 - 24630889
Alignment:
| Q |
465 |
tttcaatgaatatagggcaaggcattattgaaattatctgaatttaaaggagggtatagatgtaatttaatatt-cttggacat |
547 |
Q |
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| T |
24630806 |
tttcaatgaatatagggcaaggcattattgtaattatctgaattgaaaggagggtataaatgtaatttaacattccttggacat |
24630889 |
T |
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