View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14631_low_1 (Length: 707)

Name: NF14631_low_1
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14631_low_1
NF14631_low_1
[»] chr3 (7 HSPs)
chr3 (15-691)||(42843018-42843694)
chr3 (24-268)||(42819106-42819350)
chr3 (40-175)||(42834318-42834453)
chr3 (521-651)||(42834652-42834782)
chr3 (491-660)||(42819480-42819649)
chr3 (297-377)||(42819262-42819342)
chr3 (298-366)||(42834459-42834527)
[»] chr7 (1 HSPs)
chr7 (583-691)||(7363910-7364018)
[»] chr8 (3 HSPs)
chr8 (23-248)||(12621799-12622024)
chr8 (28-339)||(12627682-12627993)
chr8 (259-458)||(12627796-12627995)
[»] chr6 (2 HSPs)
chr6 (491-646)||(30924447-30924602)
chr6 (43-175)||(30924717-30924849)


Alignment Details
Target: chr3 (Bit Score: 645; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 15 - 691
Target Start/End: Original strand, 42843018 - 42843694
Alignment:
Q  15 cacagatgatttatcgtgggagatagacaatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42843018 cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag 42843117  T
Q  115 cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagaga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42843118 cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaagctgaaagaga 42843217  T
Q  215 aggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaaga 314  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42843218 aggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagcatgataatgtgagcaaaga 42843317  T
Q  315 attgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagctt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843318 attgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagctt 42843417  T
Q  415 gttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843418 gttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtag 42843517  T
Q  515 ctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttga 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843518 ctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttga 42843617  T
Q  615 agcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagt 691  Q
    ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843618 agcagcacaaaacaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagt 42843694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 42819106 - 42819350
Alignment:
Q  24 tttatcgtgggagatagacaatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt 123  Q
    ||||| ||||||||| |||||||||||||||||||| ||| ||||||||  ||| || || |||||||||||||| |||||||||||||||||||| |||    
T  42819106 tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt 42819205  T
Q  124 tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgc 223  Q
    |||||| |||||  ||| || |||||||||||||||||||  ||  |||||| ||||||| || | ||||| ||||||| |||||||||| | ||| |||    
T  42819206 tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgc 42819305  T
Q  224 ataaacaaaaagagctttcggaagaggagattttcaagttgaaga 268  Q
    |||||||||| ||| |||| ||| | ||||||||||||| |||||    
T  42819306 ataaacaaaaggaggtttcagaaaaagagattttcaagtagaaga 42819350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
Q  40 gacaatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata 139  Q
    |||||||||||||||||| |||||||||||||  | || | || |||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||    
T  42834318 gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata 42834417  T
Q  140 taaagttgaaggttcaagttgagagtagtgagggtc 175  Q
    ||||||||||||| ||||||| || | |||||||||    
T  42834418 taaagttgaaggtccaagttgggaatggtgagggtc 42834453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 651
Target Start/End: Original strand, 42834652 - 42834782
Alignment:
Q  521 aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggc 620  Q
    ||||||||||||||||| |||  |||||||||| |||||  || |||||   ||||||||||||||| |||| |||||||||| |||||||| ||| |||    
T  42834652 aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggc 42834751  T
Q  621 acaaaaagatattgctaaattagaattggag 651  Q
    ||   || |||| ||||||| ||||||||||    
T  42834752 actggaaaatatggctaaatcagaattggag 42834782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 660
Target Start/End: Original strand, 42819480 - 42819649
Alignment:
Q  491 atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac 590  Q
    |||||||| |||||  ||| | |||| ||| ||||||||||||||||  |||||||| || | ||||||   ||||||||  ||||||||||  ||| ||    
T  42819480 atttggtggaacagcttgatgcagctcatgcaaagctcaagatatcaacagatgaaaatgcaattttaagagaggaacttgggagtaagtcatctgagac 42819579  T
Q  591 tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattca 660  Q
    |  ||||||| || |||||||| ||| ||||||  || |||| |||| || | |||||||||||| ||||    
T  42819580 ttatcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagtttca 42819649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 42819262 - 42819342
Alignment:
Q  297 tgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa 377  Q
    |||||||||| |  |||||||||| ||||||||| | ||| || |||||||||||||| ||| | || |||||||||||||    
T  42819262 tgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa 42819342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 42834459 - 42834527
Alignment:
Q  298 gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa 366  Q
    |||||||||||| |||||||||| || ||| |||| |||||||  |||||||| ||||||||| |||||    
T  42834459 gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa 42834527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 583 - 691
Target Start/End: Complemental strand, 7364018 - 7363910
Alignment:
Q  583 catgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcat 682  Q
    |||||||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7364018 catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcacttat 7363919  T
Q  683 taggagagt 691  Q
    |||||||||    
T  7363918 taggagagt 7363910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 12621799 - 12622024
Alignment:
Q  23 atttatcgtgggagatagacaatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagct 122  Q
    ||||||| |||||||| ||||||| |||||||||| | ||| |||||||| |||  ||||| |||||||||||||| ||| | ||||| || ||||||||    
T  12621799 atttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagct 12621898  T
Q  123 ttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttg 222  Q
    ||||||| |||||| |||||||||||| ||||||| ||||| |||  |||||| | ||||| |  |  |||| ||||||| ||||||  || | ||| ||    
T  12621899 ttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcgtgaagaattgaagctgaacaaggaagagctg 12621998  T
Q  223 cataaacaaaaagagctttcggaaga 248  Q
    ||| ||||||||||||||||| ||||    
T  12621999 catgaacaaaaagagctttcgaaaga 12622024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 339
Target Start/End: Original strand, 12627682 - 12627993
Alignment:
Q  28 tcgtgggagatagacaatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcgg 127  Q
    ||||||||||| |||||  ||| ||||||| | ||| | |||||| | |  ||||||||||||||||||||  || ||||||| || ||||| |||||      
T  12627682 tcgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaa 12627781  T
Q  128 aagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataa 227  Q
    || |||| | |||||||||||||||| || |||||| ||||||||||  | ||||| || |  | || ||| ||| |||||||||| | ||| ||| |||    
T  12627782 aacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaa 12627881  T
Q  228 acaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaa 327  Q
    || |||||||| ||| ||| | ||||||||||| |||||||||||  | ||||| |||| |||| ||| |  ||||||| |  || ||||||| ||||||    
T  12627882 actaaaagagcgttcagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaa 12627981  T
Q  328 gagaaggagttg 339  Q
    ||| ||||||||    
T  12627982 gaggaggagttg 12627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 259 - 458
Target Start/End: Original strand, 12627796 - 12627995
Alignment:
Q  259 aagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttt 358  Q
    ||||||||| || |||| ||||| ||||||  | ||| |||||||||| || ||||| |||| ||||||||| | ||| ||  ||||| ||| |||| ||    
T  12627796 aagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgtt 12627895  T
Q  359 taaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgca 458  Q
     | || ||||||||||||| |||||||||||  || ||| ||||| |  | |||||  ||||||||  |||  ||||||| |||||||| ||||||||||    
T  12627896 cagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttgca 12627995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 491 - 646
Target Start/End: Complemental strand, 30924602 - 30924447
Alignment:
Q  491 atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac 590  Q
    |||||||| |||| |  ||||||||||||||| | |||||||||||| | |||||| ||| |   ||||  ||||||||| ||||||| | |  ||| ||    
T  30924602 atttggtggaacaattggaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagac 30924503  T
Q  591 tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaat 646  Q
    |||||||||||||   |||||||||| ||||||  || || || ||||||||||||    
T  30924502 tcgtcaattgcaagaccagcttgaagtggcacaggaaaatgttactaaattagaat 30924447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
Q  43 aatagaagttatgataatttgatcaaaaagctcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa 142  Q
    |||| |||||||||| | ||| | || ||| ||||  |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| |    
T  30924849 aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca 30924750  T
Q  143 agttgaaggttcaagttgagagtagtgagggtc 175  Q
    ||||||||  ||||  |||||  ||||||||||    
T  30924749 agttgaagaatcaaaatgagaaaagtgagggtc 30924717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University