View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14631_low_11 (Length: 247)
Name: NF14631_low_11
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10918902 - 10918667
Alignment:
| Q |
1 |
tttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcatggttgcagtgagtaa |
100 |
Q |
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| T |
10918902 |
tttctttccttttgttttcatccctaaatcgtgcattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacattatggctgccgtgagtaa |
10918803 |
T |
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| Q |
101 |
aatacatggatttaaaaaatatc-nnnnnnnnnnnnnnnnnnnnngattgattctaaaaacgtaactgtcaaaacctagatctcagtttgaggtggaggt |
199 |
Q |
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| T |
10918802 |
aatacatggatttaaaaaatatcttttttttgttttcttctttttgattgattttaaaaatgtaactgtcaaaacctagatctcagtttgaggtggaggt |
10918703 |
T |
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| Q |
200 |
tggctcaagatgttgaaacattataatttatttgat |
235 |
Q |
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| T |
10918702 |
tggctcaagatgttgaaacattataatttatttgat |
10918667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43958649 - 43958553
Alignment:
| Q |
1 |
tttctttccttttgttttcatctctaaatcgtgcattctaaaaagatcaatcatctttgtcgatggatttttccagaaacatcatggttgcagtgag |
97 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
43958649 |
tttctttccttttgttttcatccctaaatcgtgaattctaagaaggtcaatcgtctttgtcgatgggtttttccagaaacatcatggctgcagtgag |
43958553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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