View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14631_low_3 (Length: 504)
Name: NF14631_low_3
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 123 - 488
Target Start/End: Complemental strand, 44671204 - 44670829
Alignment:
| Q |
123 |
aaaaagaaacagataaatgaagaaatgttaataagtaatatccata------------ttagggaggaggattaaattaaattgtattaatcaatccctt |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44671204 |
aaaaagaaacagagaaatgaagaaatgttaataagtaataaccatagtcgatatcatattagggaggaggattaaattaaattgtattaatctatccctt |
44671105 |
T |
|
| Q |
211 |
ttaggttgtgaaataaactactacggaacgtgatggttttattatgcaccttgcatttcctccccctactttcttattgatgaactctggtcattcttgg |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44671104 |
ttaggttg--aaataaactactacggaacgtcatggttttattatgcaccttgcatttcctccccctactttcttcttgatgaactctggtcattcttgg |
44671007 |
T |
|
| Q |
311 |
gatttagattcatgatcttagcagaagatatatttcaaacaaaacaattgtgaagaaagtattattaaaagtttgtaccttgaaatcttggtctgcctaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44671006 |
gatttagattcatgatcttagcagaagatatatttcaaacaaaacaattgtgaagaaagtattattaaaagtttgtaccttgaaatcttggtctgcctaa |
44670907 |
T |
|
| Q |
411 |
cgaatgaggttgtgtttgagtaattaaaatcaatttgtttgtgctaatcgcaaattggcacttagcacaaatgttttc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44670906 |
cgaatgaggttgtgtttgagtaattaaaatcaatttgtttgtgctaatcgcaaattggcacttagcacaaatgttttc |
44670829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 44671170 - 44671206
Alignment:
| Q |
53 |
cttattaacatttcttcttttctctgtttcgttttgc |
89 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
44671170 |
cttattaacatttcttcatttctctgtttctttttgc |
44671206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University