View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14631_low_4 (Length: 445)
Name: NF14631_low_4
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 229 - 429
Target Start/End: Complemental strand, 26505892 - 26505692
Alignment:
| Q |
229 |
gaacgcacaatgaatctggtctcaacctatcgcatttcttgggaaaatgttgactttagttaatcaatccacggagttgcagttgtggaataaaatattt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26505892 |
gaacgcacaatgaatctggtctcaacctatcgcatttcttgggaaaatgttgactttagttaatcaatccacggagttgcagttgtggaataaaatattt |
26505793 |
T |
|
| Q |
329 |
tttgtacttaagtatcttaagtttttcttctccattactctattactgatcctccttgcaattgtggaataaagtcttttttgtactttgcaaacacaaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26505792 |
tttgtacttaagtatcttaagtttttcttctccattactctattactgatcctccttgcaattgtggaataaagtcttttttgtactttgcaaacacaaa |
26505693 |
T |
|
| Q |
429 |
c |
429 |
Q |
| |
|
| |
|
|
| T |
26505692 |
c |
26505692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 26506084 - 26505889
Alignment:
| Q |
1 |
gttcttagctttccacaaacaccatacaccagcaaaccaaattgaagtgaaatgaattctagatacattacctaagttcaccagtccttccaattgctcc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26506084 |
gttcttagctttccacaaacgccatacaccagcaaaccaaattgaagtgaaatgaattctagatacattacctaagttcaccagtccttccaattgctcc |
26505985 |
T |
|
| Q |
101 |
agatgtgcttgccctccagatacaaaagttgaagatatatcaatccacatcattatcgagctccacacgttcagaacgaatggacaaccaaagaac |
196 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26505984 |
agatgtgcttgccctccggatacaaaggttgaagatatatcaatccacatcattatcgagctccacacgttcagaacgaatggacaaccaaagaac |
26505889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University